On Fri, Aug 22, 2014 at 9:39 AM, Marija Atanaskovic
ma...@unimelb.edu.au wrote:
Mira doesn’t work on Galaxy. This is the log message I receive.
Tool: Assemble with MIRA v3.4
Name: MIRA log
Created: Fri Aug 22 00:24:38 2014 (UTC)
Filesize: 0 bytes
Dbkey: ?
Format: txt
Galaxy Tool Version:
On Fri, Aug 22, 2014 at 8:18 PM, Marija Atanaskovic
ma...@unimelb.edu.au wrote:
Hi Peter,
I don¹t know what the stdout and stderr information was. I click on it but
nothing comes up.
I installed from the main toolshed:
http://toolshed.g2.bx.psu.edu/view/peterjc/mira_assembler
Yes, I did
On Fri, Aug 22, 2014 at 8:00 PM, Peter Cock p.j.a.c...@googlemail.com wrote:
On Fri, Aug 22, 2014 at 9:39 AM, Marija Atanaskovic
ma...@unimelb.edu.au wrote:
Also I can’t install Mira 4. This is the message I receive.
Any suggestions.
Getting Internal Server Error is unhelpful - I can't
Hi Peter,
Thanks for your response and for the advice from the other subscribers. I
am not the site administrator, but I have passed on all the email
correspondence to the administrators. I am a “wet-lab” scientist who
wanted to use the programme for my work. That is why I use Galaxy as the
On Thu, Apr 19, 2012 at 12:40 AM, JIE CHEN jiechenable1...@gmail.com wrote:
The version I installed is : mira_3.4.0_prod_linux-gnu_x86_64_static
OK, good.
The other key question I asked was did you get anything in the MIRA
log file (it should be in your history with text data even though it
Hi Peter,
Thank you for your patience. I checked the error message in the history.
They all give exactly the same error-- the one i gave in the first thread.
I re thinks the procedure many times and it shouldn't have any problem.
Don't know why.
What i have done:
1. Installed the mira wrappers
On Thu, Apr 19, 2012 at 6:35 PM, JIE CHEN jiechenable1...@gmail.com wrote:
Hi Peter,
Thank you for your patience. I checked the error message in the history.
They all give exactly the same error-- the one i gave in the first thread.
Are you saying this is the entire contents of the MIRA log
Hi Peter,
Here is the full log:
This is MIRA V3.4.0 (production version).
Please cite: Chevreux, B., Wetter, T. and Suhai, S. (1999), Genome Sequence
Assembly Using Trace Signals and Additional Sequence Information.
Computer Science and Biology: Proceedings of the German Conference on
On Thu, Apr 19, 2012 at 7:13 PM, JIE CHEN jiechenable1...@gmail.com wrote:
Hi Peter,
Here is the full log:
Excellent :)
The good news is MIRA seems to be installed and running
fine - it just didn't like your test data, and I understand why:
...
Sanger will load 1 reads.
Longest Sanger:
On Wed, Apr 18, 2012 at 11:21 PM, JIE CHEN jiechenable1...@gmail.com wrote:
Dear all,
I just installed Mira-Assembler via Galaxy tool sheds. As expected, it
downloaded the wrappers into the shed-tools directory. Then I downloaded
and installed Mira binaries on the system and add it to $PATH.
The version I installed is : mira_3.4.0_prod_linux-gnu_x86_64_static
On Wed, Apr 18, 2012 at 3:31 PM, Peter Cock p.j.a.c...@googlemail.comwrote:
On Wed, Apr 18, 2012 at 11:21 PM, JIE CHEN jiechenable1...@gmail.com
wrote:
Dear all,
I just installed Mira-Assembler via Galaxy tool sheds.
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