Dear John, dear Curtis, and all
all that is required to fix my current issue is that the files show up
in the 'Upload File' tool form in alphabetical order.
I assume that at some point an 'ls' command is done on the users' ftp
home folder. The result of that could possibly be stored in a hash
Hi Peter,
Thanks for reporting this. I am now facing the same error, but I don't get
it For example: normally it appears when I try to change something in the
DB (e.g. adding a new history), but then suddenly I managed to create one new
history itemand now it is occurring again. It
Thanks Greg for the heads-up!
These are great news, I can surely wait until mid-January (the wait
will be mostly vacation time :).
Just let us know when we can start checking again the test results on
the main Tool Shed.
Nicola
Il 2013-12-17 21:15 Greg Von Kuster ha scritto:
Hi Nicola,
Hi Pieter,
Using SQLite is NOT recommended for a production Galaxy,
it is only really used for development and testing (having the
whole database as one file on disk without worrying about
creating a proper database, user accounts etc is nice).
Peter
On Wednesday, December 18, 2013, Lukasse,
Hi Peter,
I know that ;) Still I am curious about the possible solution. Any ideas?
Regards,
Pieter.
From: Peter Cock [mailto:p.j.a.c...@googlemail.com]
Sent: woensdag 18 december 2013 13:31
To: Lukasse, Pieter
Cc: Galaxy Dev
Subject: Re: New Galaxy won't start, SQLite (OperationalError)
Couple things...
I just pushed a commit to galaxy-central to sort those files by
default - that is a clear improvement:
https://bitbucket.org/galaxy/galaxy-central/commits/ce186eb5fefcb7ff332c73bd0869b9e93d0b
Clearly not enough though - it would be nice to have for more advanced
sorting
Hi Jeremy, Anna,
I'm having a similar problem here as well. I would like to get a history from
one Galaxy server to another and I followed the export and import steps. I even
did a wget at the destination Galaxy server to check whether it could download
the tar.gz file and this worked. When
Ahh... missed that. Sorry (and thanks for putting together the page :)
). It seems like we are on the same page - I have created a Trello
card for 'stronger' toolbox filters.
https://trello.com/c/Sg8D2PBj
It occurs to me there may another way to accomplish admin tool
functionality - and in an
File system performance varies wildly between storage architectures.
There are storage server setups that can easily scale to orders of
magnitude beyond the compute that backs usegalaxy.org - suffice to say
we are currently bound by the number of cores we have available and
not by IO/network
Hello,
by API controller I meant the Python module that takes control over the
endpoints of API thus providing logic. You don't need to 'use them' - you
can create API requests by many different means by specifying URL
(sometimes +params+payload). Look at the extension link I have sent you,
that
Dear John
Thanks very much. This is the perfect (minimal) solution that I need
right now.
I am looking forward to your work on pairs of data. It sounds like it
will be exceptionally useful for us.
Thanks again and best wishes
Ulf
On 18/12/13 14:29, John Chilton wrote:
Couple things...
I
On Wed, Dec 18, 2013 at 12:51 PM, Lukasse, Pieter pieter.luka...@wur.nl wrote:
Hi Peter,
I know that ;) Still I am curious about the possible solution. Any ideas?
Regards,
Pieter.
Could you clarify the nature of the problem - is it failing to
even start as in the situation I reported at
Hi Nicola,
This doesn't appear to be a known functional test failure (if I am
reading the logs right), but I am also not the best resource to
troubleshoot this particular type of problem. I am going to move this to
the dev list for more feedback. If you want to add more details about
your
Hello all,
Just a reminder that GCC2014 Training Day Topic Nominations close this
Friday, December 20. We have 9 excellent nominations thus
farhttp://wiki.galaxyproject.org/Events/GCC2014/TrainingDay,
but we need more. If you have something you want to see covered, *then
please nominate a topic
Hello -
I pulled down the latest changes today (it was long overdue), and am
running into the following error when I run the tool migration:
sh ./scripts/migrate_tools/0008_tools.sh install_dependencies
No handlers could be found for logger galaxy.tools.data
Repositories will be installed into
Hello Kerry,
I've committed a fix for this in 11800:a53f2f700699 to the galaxy-central
branch. Is that the branch you're pulling?
Thanks for reporting this.
Greg Von Kuster
On Dec 18, 2013, at 5:48 PM, Kerry Deutsch kerry.deut...@systemsbiology.org
wrote:
Hello -
I pulled down the
No, we're pulling galaxy-dist.
Thanks for the quick reply,
Kerry
On Wed, Dec 18, 2013 at 4:07 PM, Greg Von Kuster g...@bx.psu.edu wrote:
Hello Kerry,
I've committed a fix for this in 11800:a53f2f700699 to the galaxy-central
branch. Is that the branch you're pulling?
Thanks for reporting
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