Hi John,
Thanks, this does indeed change the behaviour to be consistent. However,
this is exactly the reverse of what I would like to do. I would actually
like to replace all select boxes by the jQuery-based widget.
Particularly for large lists I find the select2 to be much more
user-friendly.
Hi John,
As you noticed (and posted on Twitter), I've just tweaked the NCBI
makeblastdb wrapper on GitHub to use a multiple file picker instead
of a repeat:
https://github.com/peterjc/galaxy_blast/commit/858bf541a828644ea6461b20b687c214b564d3b0
That seems to be working fine in human testing
On Tue, Feb 25, 2014 at 2:29 PM, John Chilton jmchil...@gmail.com wrote:
Hey Peter,
Answers inline.
On Tue, Feb 25, 2014 at 8:08 AM, Peter Cock p.j.a.c...@googlemail.com wrote:
Hi John,
As you noticed (and posted on Twitter), I've just tweaked the NCBI
makeblastdb wrapper on GitHub to use
On Tue, Feb 25, 2014 at 2:29 PM, John Chilton jmchil...@gmail.com wrote:
On Tue, Feb 25, 2014 at 8:08 AM, Peter Cock p.j.a.c...@googlemail.com wrote:
I've also just tried this for the masking files - but ran into a problem.
Here the masks are optional, and I want the default to be no mask:
Hi all,
There was a regression introduced in the most recent stable release that
was preventing jobs from being stopped, fixed here:
https://bitbucket.org/galaxy/galaxy-central/commits/1298d3f6aca59825d0eb3d32afd5686c4b1b9294?at=stable
You can pull from the stable branch of galaxy-central to
On Tue, Feb 25, 2014 at 2:50 PM, John Chilton jmchil...@gmail.com wrote:
Okay, known issue I guess. No inputs evaluates as a list with just
None in it. This is less than ideal and there is an open Trello card
on this (see top item of TODO list) https://trello.com/c/lp5YmA1O.
I think vanilla
Hi Sarah,
Could you include the installation stdout as well? The dependency
installation log separates stdout and stderr into two sections, there might
be more detail about exactly where it's failing in the stdout.
--nate
On Fri, Feb 21, 2014 at 4:21 AM, Sarah Diehl
Hi Nate,
thanks for all your help! I attached the full installation log file.
Best regards,
Sarah
- Original Message -
From: Nate Coraor n...@bx.psu.edu
To: Sarah Diehl di...@ie-freiburg.mpg.de
Cc: galaxy-dev@lists.bx.psu.edu List galaxy-dev@lists.bx.psu.edu
Sent: Tuesday, February 25,
What’s the right way to contribute additions to other people’s repos?
I have extended the picard wrappers to support the rna-seq metrics and
downsample sam tools, but I don’t want to start a new repo just for these.
I have attached the output from hg outgoing -p in case that’s useful
Hi Brad,
unfortunately there is no standard way to contribute back to the
repositories. Many of us have a github/bitbucket repositories with the
wrappers.
There are a few tickets to make that best practise, for example:
https://trello.com/c/WdShmMld
For the time being, please create a
On Tue, Feb 25, 2014 at 4:53 PM, Björn Grüning
bjoern.gruen...@gmail.com wrote:
Hi Brad,
unfortunately there is no standard way to contribute back to the
repositories. Many of us have a github/bitbucket repositories with the
wrappers.
There are a few tickets to make that best practise, for
Hello,
I am trying to import an large MAF file (gzipped at 5gb, unzipped =60gb). When
I import the file, I get the following message upon completion:
An error occurred setting the metadata for this dataset. You may be able to
set it manually or retry auto-detection
However, when I open
Hi Bjorn:
I don’t appear to have permission to create cards on the the galaxy-tool-shed
board…
I can create cards on the main board via http://galaxyproject.org/trello
but I can’t find an analog for the toolshed board.
Am I missing something?
Brad
--
Brad Langhorst, Ph.D.
Applications and
Hi Brad,
interesting. I have CC'ed Greg, maybe he can get help us.
In the meantime, please create it under the Galaxy ToolShed. It's
probably not really defined in which board we should create Tool issues.
Thanks!
Bjoern
Hi Bjorn:
I don’t appear to have permission to create cards on the
Hi Brad and Björn,
Tickets can currently only be added to the Galaxy Trello Board, so please add
them there and we'll move them to the Tool Shed Trello board whenever
appropriate. Hopefully we'll soon have the ability for tickets to be submitted
to multiple boards.
Thanks very much!
Greg
Has anyone set up a local toolshed with external authentication?
Is this expected to work?
I have external auth working, but tools cannot be installed (403 forbidden)
unless I turn of authentication.
If i turn on remote-auth, i have to configure the webserver to ask for
credentials otherwise i
I've set it up with external authentication but haven't tried to pull any tools from it yet...been meaning to get around to that. Good to know it would've failed anyway.Unfortunately "creds for login page only" is not how HTTP authentication works, so that's out of the question. My initial
Greetings,
We are trying to enable job-splitting and merging on our Galaxy blast tools. We
set the following parameters in the universe_wsgi.ini:
use_tasked_jobs = True
local_task_queue_workers = 2
Then we executed the tool NCBI BLAST+ blastn (from devteam's NCBI BLAST+) on
a query set of
On Tue, Feb 25, 2014 at 10:57 PM, Sanka, Ravi rsa...@jcvi.org wrote:
Greetings,
We are trying to enable job-splitting and merging on our Galaxy blast tools.
We set the following parameters in the universe_wsgi.ini:
use_tasked_jobs = True
local_task_queue_workers = 2
Then we executed the
19 matches
Mail list logo
