I'm trying to create a tool for scientists to BATCH download multiple fastq
files from EBI based on starting list of SRA-ID's. The EBI-SRA tool seems
to only take one ID at a time.
Proposed approach:
Defin workflow with two steps.
Step1: Get list of ID's from user. Lookup FTP/URL for each ID.
S
Hi,
We just installed a galaxy server and are doing the tools testing right now.
When we were testing the "Send Data" tool, we encountered an error as below.
Error executing tool: 302 Found The resource was found at
/tool_runner/redirect?redirect_url=http%3A%2F%2Fepigraph.mpi-inf.mpg.de%2FWebGR
Sort (version 1.0.1)
on column: c5
with flavor: Numerical sort
everything in: Descending order
On 05/07/2012 06:28 PM, Jeremy Goecks wrote:
Sarah,
What tool was used to create the problematic dataset?
Thanks,
J.
On May 7, 2012, at 12:17 PM, Sarah Diehl wrote:
Hi all,
I get the following
Sarah,
What tool was used to create the problematic dataset?
Thanks,
J.
On May 7, 2012, at 12:17 PM, Sarah Diehl wrote:
> Hi all,
>
> I get the following error when I try to export a specific history to file:
>
> 10.1.5.190 - - [07/May/2012:18:01:08 +0200] "GET /history/export_archive
> HTTP
Hi all,
I get the following error when I try to export a specific history to file:
10.1.5.190 - - [07/May/2012:18:01:08 +0200] "GET /history/export_archive
HTTP/1.1" 500 - "http://galaxy.immunbio.mpg.de/"; "Mozilla/5.0 (X11; U;
Linux x86_64; en-US; rv:1.9.2.24) Gecko/2008 Fedora/3.6.24-1.f
Hello all,
I recently tried moving from a tarball install of Galaxy to a Mercurial
managed one, and in the process something went wrong with the database
upgrade. I had intended to install the Mercurial-based Galaxy separately
(though on the same machine) and then move it to production once it was
> Let me give an example of something that I do. I have the user select a file
> after which I, using dynamic_options, extract the column names and present
> those to the user with a select input parameter. With the selected column
> name I then present a new select input parameter with all the
We are using PBS locally and had our cluster admin set this up, but I think the
same principle applies across most job runners/mgrs. As Peter mentioned, there
should be a way for cluster admin to add your server as an allowed submitting
host, the PBS variant is here:
http://www.clusterre
Hi,
The Extract GFF Features doesn't use dynamic options and I don't think that's
really the question here.
Let me give an example of something that I do. I have the user select a file
after which I, using dynamic_options, extract the column names and present
those to the user with a select in
Hi,
After execution, my tool created many files in a directory , how can I to
find this directory?
command: bash mytool.sh $input
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