Hi Rodrigo,
I'm currently working on support for Eucalyptus clouds, so if that's the
cloud infrastructure you have setup locally, support will be available soon.
However, it is not working yet.
Enis
2011/10/10 Rodrigo García Herrera rgar...@inmegen.gob.mx
Hello!
If I setup a private cloud
Hi
just asking the obvious questions to double check:
- are you sure, this second instance is not accessing the same
PostgreSQL/MySQL database as the first one?
- are you sure, the user you are logged-in does exist in the
PostgreSQL/MySQL database? I kind of remember getting a similar
Hi,
I thought I had already asked this question a while ago, but I can't find it
so I guess I haven't.
When porting my own tool, is there anyway to customize the name of the
output?
Timothy
___
Please keep all replies on the list by using
On Wed, Oct 12, 2011 at 4:50 PM, Timothy Wu 2hug...@gmail.com wrote:
Hi,
I thought I had already asked this question a while ago, but I can't find
it so I guess I haven't.
When porting my own tool, is there anyway to customize the name of the
output?
Timothy
I have another perhaps
Hi Timothy
Are you talking about the name as it will appear in the history?
Then have a look at the following wiki page:
http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Config%20Syntax#A.3Coutputs.3E_tag_set
Regards, Hans
On 10/12/2011 10:50 AM, Timothy Wu wrote:
Hi,
I thought I had already
Hi Timothy
I don't really see the connection to you first question, but maybe I
misunderstood the first one
Anyway, you probably need to define those output files which are
required by B as 'Static Multiple Outputs' and the rest as 'Variable
Static Outputs determined by parameter
Hi,
I a similar vein to
http://gmod.827538.n3.nabble.com/Dynamic-default-values-tt3010740.html I
am trying to populate a default value based on settings elsewhere, in
this case the user email if they are logged in.
So far I have:
conditional name=email_on_completion
param
On Wed, Oct 12, 2011 at 5:23 PM, Hans-Rudolf Hotz h...@fmi.ch wrote:
Hi Timothy
Are you talking about the name as it will appear in the history?
Then have a look at the following wiki page:
http://wiki.g2.bx.psu.edu/**Admin/Tools/Tool%20Config%**
David,
Please direct questions about local installations to the galaxy-dev mailing
list (cc'd); there are a large number of experienced people of this list that
can likely help with this and similar questions.
Just a quick question about the compute infrastructure of the setup running
the
Again, solved my own problem.
diff -r 949e4f5fa03a tools/plotting/scatterplot.py
--- a/tools/plotting/scatterplot.py Mon Aug 29 14:42:04 2011 -0400
+++ b/tools/plotting/scatterplot.py Wed Oct 12 10:35:58 2011 -0400
@@ -20,7 +20,8 @@
xlab = sys.argv[6]
ylab = sys.argv[7]
-
Thanks, we actually had the wrong cookie_path set and that seemed to be causing
the problem.
Ilya
-Original Message-
From: Hans-Rudolf Hotz [mailto:h...@fmi.ch]
Sent: Wednesday, October 12, 2011 1:09 AM
To: Chorny, Ilya
Cc: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] strange
Is there a way of uploading workflows by saving the workflow to a file and
copying the workflow files to a directory or editing a database file to point
to them. When external authentication is invoked linking to workflows does not
seem to work and copy and pasting from a file is very tedious.
I am developing a custom workflow in galaxy. I have 4 input files that need to
be fed into various steps of the workflow. I would like to be able to specify
a data type for the inputs such that the pre-populated drop downs are filtered
to datasets of the appropriate type as well as being able
Ann,Unless I misunderstand what you're asking for, this should already be the case. For instance, if a workflow step takes in a file of 'tabular' type, only tabular files (and subtypes, including interval, etc.) should be presented as dropdowns in the list. Types such as plain text, binary files,
HI Jeremy,
Many thanks for the feedback (I thought I'd cc'd the dev list but apparently
not!) any advice is most useful especially as they are keen to hear what we
want (they already have a list of demands from the aerospace guys!).
Best Wishes,
David.
__
Dr
Hello David,
An update is planned, but we can't provide an exact time-line yet. To
track the issue, this bitbucket ticket can be followed:
https://bitbucket.org/galaxy/galaxy-central/issue/524/
Apologies for the delay in reply,
Best,
Jen
Galaxy team
On 8/23/11 9:10 AM, David Hoover wrote:
Hi -DannonI am attaching a sample workflow so you can hopefully reproduce locally:
Galaxy-Workflow-Test_Workflow.ga
Description: Binary data
I have a history that contains datasets of various different types. I would expect when I run this workflow, however, that only the datasets in my history
Hello Ilya,
I've recently enhanced the workflow import features to allow for uploading an
exported Galaxy workflow file. This will replace the current TextArea that
forces you to paste the workflow text in order to import it. I'm not quite
able to commit this change yet as I am in the
I have an mpileup tool for Galaxy I've developed. After a little more testing
I may be able to share it.
the tool also converts the bcl output of mpileup to vcf
On Oct 12, 2011, at 2:41 PM, Jennifer Jackson wrote:
Hello David,
An update is planned, but we can't provide an exact time-line
I made some changes to the cufflinks and tophat wrapper to pull gtf files
from an indexed loc file as opposed to from history. The diff’s are
attached. I made it an optional feature. Please let me know if this makes its
way into galaxy-central.
Ilya,
This looks like a good start. A
1.)Please see attached.
2.)So I did this for tophat and cufflinks. This would be useful for
cuffcompare. Cuffdiff uses the gtf files output from cufflinks and not
reference gtf files.
Following a conversation we had with James, I plan on editing the xml scripts
to pull the genome
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