subject:"biber"


On Thu, 28 Mar 2024, Paul Rubin wrote:


Not sure this is the problem, but you have .../texlive/202*4*/... in the
bash profile and .../texlive/202*3*/... in PATH.


Paul,

This is a new installation of the OS on the laptop. There is no TeXLive2023
anywhere. And the only reference to texlive is the TEXLIVEPATH in
~/.bash_profile. I've no idea where `echo $PATH' could find a texlive/2023/
directory since none exists.

Sigh. Thanks,

Rich
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Re: LyX-3.2.7.1 not finding biber


On Thu, 28 Mar 2024, Tobias Hilbricht wrote:


check if biber is found, at the command line like this:
$ which biber 
$ /home/tobias/.local/bin/biber
If it is not installed, install, e. g.
$ tlmgr install biber
If it is installed but not found you have to place it in $PATH:
$ echo $PATH
shows possible folders.


Tobias,

`which' doesn't find it, but find did, in my path:
$ echo $PATH
/home/rshepard/bin:/usr/local/bin:/usr/local/texlive/2023/bin/x86_64-linux:/usr/bin:/usr/local/bin:/usr/bin:/bin:/usr/games:/usr/lib64/libexec/kf5:/usr/lib64/qt5/bin

It's in the third entry because in ~/.bash_profile I specified
TEXLIVEPATH=/usr/local/texlive/2024/bin/x86_64-linux:$PATH

Wonder why lyx isn't finding it.

Thanks,

Rich

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Re: LyX-3.2.7.1 not finding biber

2024-03-28 Thread Tobias Hilbricht

Rich,

check if biber is found, at the command line like this:
$ which biber 
$ /home/tobias/.local/bin/biber
If it is not installed, install, e. g.
$ tlmgr install biber
If it is installed but not found you have to place it in $PATH:
$ echo $PATH
shows possible folders.

Hope it helps
Tobias



Am Donnerstag, dem 28.03.2024 um 12:36 -0700 schrieb Rich Shepard:
> I installed LyX-2.3.7.1 and JabRef-5.12 on my laptop running
> Slackware64-15.0. When I try to compile a document using pdflatex LyX
> tells
> me that the bibliography processor (biber) is not available (see
> attached.)
> 
> How to I make biber available in 2.3.7.1?
> 
> TIA,
> 
> Rich

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Re: LyX-3.2.7.1 not finding biber


On Thu, 28 Mar 2024, Rich Shepard wrote:

Screenshot now sent.

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LyX-3.2.7.1 not finding biber


I installed LyX-2.3.7.1 and JabRef-5.12 on my laptop running
Slackware64-15.0. When I try to compile a document using pdflatex LyX tells
me that the bibliography processor (biber) is not available (see attached.)

How to I make biber available in 2.3.7.1?

TIA,

Rich
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Re: How to (re)run biber

2022-01-07 Thread Herbert Voss via lyx-users


Am 07.01.22 um 15:18 schrieb Wolfgang Engelmann via lyx-users:
a short lyx file (attached) with just one reference and some text is 
not correctly exported to lualatex pdf (thick reference instead of a 
blue reference, no bibliography shown).


I use lualatex and the biblatex-spbasic style file (attached).
In the latex log I am told to rerun biber:

Package biblatex Warning: Please (re)run Biber on the file:

Question: Why do I have to (re)run biber and how is it done?



Wolfgang,

your example cannot work! In the lyx file you have defined:

bibfiles "SP-WITTE-2022-AUX"

but your attached bibfile has the filename: "OneRef.bib"

Changing the filename with clicking on the "prinbibliography" button in
the opened  LyX file to the correct one and then running the document
everything is fine.

Herbert
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biber/biblatex

2019-07-16 Thread Wolfgang Engelmann

Is there a (preferentially Komascript) book style template available 
which uses biber/biblatex, so that one can check for the correct 
settings in tools and document?


Wolfgang

Re: Biber Biblatex Lyx Jabref > solved

2019-04-05 Thread Wolfgang Engelmann

On 04.04.19 15:10, Wolfgang Engelmann wrote:

On 04.04.19 15:03, Axel Dessecker wrote:

Am Donnerstag, 4. April 2019, 14:41:08 CEST schrieb Wolfgang Engelmann:

On 04.04.19 12:44, Jürgen Spitzmüller wrote:

Am Do., 4. Apr. 2019 um 10:27 Uhr schrieb Wolfgang Engelmann

mailto:engelm...@uni-tuebingen.de>>:
 On 03.04.19 16:30, Jürgen Spitzmüller wrote:
 > As with BibTeX, the encoding should ideally match the encoding
  of he
  > document. If it differs, you can add bibencoding=utf8 
to Document >

 > Settings > Bibliography > Citation Style > Options
  Thanks, Jürgen. Could you or somebody else kindly try 
this one, to

 see
 whether the Umlaute are ok?
   @Article{Buenning1935,
    author  = {Bünning, E.},
    title   = {Zur {K}enntnis der erblichen {T}agesperiodizität 
bei

 den
 {P}rimärblättern von \emph{{P}haseolus multiflorus}},
    journal = {Jb. wiss. Bot.},
    year    = {1935},
    volume  = {81},
    pages   = {411--418},
 }

We need a real minimal example file (lyx file and bib) in order to
help you.

Jürgen

In preparing a minimal example I created a new minimal lyx file and a
new bib file with just one entrance (the one above) and, voila, the
problem with the Umlaute was gone. If I use the old bib file (with many
literature references) this one item does not show the Umlaute, 
although

only this item is required.

Conclusion: The problem is with the (jabref) bib file and is not a lyx
question.

But I am not sure how to proceed. If I copy my references from the old
bib file in the new one, the umlaute problem comes back, even with the
one which were correct before (I had copy/pasted them separately in the
new bib file). Perhaps someone of the Jabref users might have an idea?

Thanks for all the help

Wolfgang

Are you sure about the correct formatting of your older entries 
containing

umlauts? Have you recoded the .bib file to UTF-8?

Axel

Yes, I did.

Just found out, that apparently the new Jabref 4.3.1 needs 
Java-8-openjdk, not Java-9-openjdk, or alternatively openjfx.

Will try, and thanks

Wolfgang

installing openjdk-8-jdk and reinstalling jabref 2.10 solved my problem. 
I appreciated the help I received.

Wolfgang

Re: Biber Biblatex Lyx Jabref

On 04.04.19 15:03, Axel Dessecker wrote:

Am Donnerstag, 4. April 2019, 14:41:08 CEST schrieb Wolfgang Engelmann:

On 04.04.19 12:44, Jürgen Spitzmüller wrote:

Am Do., 4. Apr. 2019 um 10:27 Uhr schrieb Wolfgang Engelmann

mailto:engelm...@uni-tuebingen.de>>:
 On 03.04.19 16:30, Jürgen Spitzmüller wrote:
 > As with BibTeX, the encoding should ideally match the encoding

 of he

 > document. If it differs, you can add bibencoding=utf8 to Document >

 > Settings > Bibliography > Citation Style > Options

 Thanks, Jürgen. Could you or somebody else kindly try this one, to

 see
 whether the Umlaute are ok?

 @Article{Buenning1935,

author  = {Bünning, E.},
title   = {Zur {K}enntnis der erblichen {T}agesperiodizität bei
 den
 {P}rimärblättern von \emph{{P}haseolus multiflorus}},
journal = {Jb. wiss. Bot.},
year= {1935},
volume  = {81},
pages   = {411--418},
 }

We need a real minimal example file (lyx file and bib) in order to
help you.

Jürgen

In preparing a minimal example I created a new minimal lyx file and a
new bib file with just one entrance (the one above) and, voila, the
problem with the Umlaute was gone. If I use the old bib file (with many
literature references) this one item does not show the Umlaute, although
only this item is required.

Conclusion: The problem is with the (jabref) bib file and is not a lyx
question.

But I am not sure how to proceed. If I copy my references from the old
bib file in the new one, the umlaute problem comes back, even with the
one which were correct before (I had copy/pasted them separately in the
new bib file). Perhaps someone of the Jabref users might have an idea?

Thanks for all the help

Wolfgang

Are you sure about the correct formatting of your older entries containing
umlauts? Have you recoded the .bib file to UTF-8?

Axel

Yes, I did.

Just found out, that apparently the new Jabref 4.3.1 needs 
Java-8-openjdk, not Java-9-openjdk, or alternatively openjfx.

Will try, and thanks

Wolfgang

Re: Biber Biblatex Lyx Jabref

2019-04-04 Thread Axel Dessecker

Am Donnerstag, 4. April 2019, 14:41:08 CEST schrieb Wolfgang Engelmann:
> On 04.04.19 12:44, Jürgen Spitzmüller wrote:
> > Am Do., 4. Apr. 2019 um 10:27 Uhr schrieb Wolfgang Engelmann
> > 
> > mailto:engelm...@uni-tuebingen.de>>:
> > On 03.04.19 16:30, Jürgen Spitzmüller wrote:
> > > As with BibTeX, the encoding should ideally match the encoding
> > 
> > of he
> > 
> > > document. If it differs, you can add bibencoding=utf8 to Document >
> > > Settings > Bibliography > Citation Style > Options
> > 
> > Thanks, Jürgen. Could you or somebody else kindly try this one, to
> > see
> > whether the Umlaute are ok?
> > 
> > 
> > @Article{Buenning1935,
> >author  = {Bünning, E.},
> >title   = {Zur {K}enntnis der erblichen {T}agesperiodizität bei
> > den
> > {P}rimärblättern von \emph{{P}haseolus multiflorus}},
> >journal = {Jb. wiss. Bot.},
> >year= {1935},
> >volume  = {81},
> >pages   = {411--418},
> > }
> > 
> > We need a real minimal example file (lyx file and bib) in order to
> > help you.
> > 
> > Jürgen
> 
> In preparing a minimal example I created a new minimal lyx file and a
> new bib file with just one entrance (the one above) and, voila, the
> problem with the Umlaute was gone. If I use the old bib file (with many
> literature references) this one item does not show the Umlaute, although
> only this item is required.
> 
> Conclusion: The problem is with the (jabref) bib file and is not a lyx
> question.
> 
> But I am not sure how to proceed. If I copy my references from the old
> bib file in the new one, the umlaute problem comes back, even with the
> one which were correct before (I had copy/pasted them separately in the
> new bib file). Perhaps someone of the Jabref users might have an idea?
> 
> Thanks for all the help
> 
> Wolfgang


Are you sure about the correct formatting of your older entries containing 
umlauts? Have you recoded the .bib file to UTF-8?

Axel



signature.asc
Description: This is a digitally signed message part.

Re: Biber Biblatex Lyx Jabref

On 04.04.19 12:44, Jürgen Spitzmüller wrote:
Am Do., 4. Apr. 2019 um 10:27 Uhr schrieb Wolfgang Engelmann 
mailto:engelm...@uni-tuebingen.de>>:

On 03.04.19 16:30, Jürgen Spitzmüller wrote:
> As with BibTeX, the encoding should ideally match the encoding
of he
> document. If it differs, you can add bibencoding=utf8 to Document >
> Settings > Bibliography > Citation Style > Options

Thanks, Jürgen. Could you or somebody else kindly try this one, to
see
whether the Umlaute are ok?

@Article{Buenning1935,
   author  = {Bünning, E.},
   title   = {Zur {K}enntnis der erblichen {T}agesperiodizität bei
den
{P}rimärblättern von \emph{{P}haseolus multiflorus}},
   journal = {Jb. wiss. Bot.},
   year    = {1935},
   volume  = {81},
   pages   = {411--418},
}

We need a real minimal example file (lyx file and bib) in order to 
help you.

Jürgen

In preparing a minimal example I created a new minimal lyx file and a 
new bib file with just one entrance (the one above) and, voila, the 
problem with the Umlaute was gone. If I use the old bib file (with many 
literature references) this one item does not show the Umlaute, although 
only this item is required.

Conclusion: The problem is with the (jabref) bib file and is not a lyx 
question.

But I am not sure how to proceed. If I copy my references from the old 
bib file in the new one, the umlaute problem comes back, even with the 
one which were correct before (I had copy/pasted them separately in the 
new bib file). Perhaps someone of the Jabref users might have an idea?

Thanks for all the help

Wolfgang

Re: Biber Biblatex Lyx Jabref

2019-04-04 Thread Jürgen Spitzmüller

Am Do., 4. Apr. 2019 um 10:27 Uhr schrieb Wolfgang Engelmann <
engelm...@uni-tuebingen.de>:

>
> On 03.04.19 16:30, Jürgen Spitzmüller wrote:
> > As with BibTeX, the encoding should ideally match the encoding of he
> > document. If it differs, you can add bibencoding=utf8 to Document >
> > Settings > Bibliography > Citation Style > Options
>
> Thanks, Jürgen. Could you or somebody else kindly try this one, to see
> whether the Umlaute are ok?
>
>
> @Article{Buenning1935,
>author  = {Bünning, E.},
>title   = {Zur {K}enntnis der erblichen {T}agesperiodizität bei den
> {P}rimärblättern von \emph{{P}haseolus multiflorus}},
>journal = {Jb. wiss. Bot.},
>year= {1935},
>volume  = {81},
>pages   = {411--418},
> }
>

We need a real minimal example file (lyx file and bib) in order to help you.

Jürgen

Re: Biber Biblatex Lyx Jabref



On 04.04.19 10:27, Wolfgang Engelmann wrote:


On 03.04.19 16:30, Jürgen Spitzmüller wrote:
As with BibTeX, the encoding should ideally match the encoding of he 
document. If it differs, you can add bibencoding=utf8 to Document > 
Settings > Bibliography > Citation Style > Options


Thanks, Jürgen. Could you or somebody else kindly try this one, to see 
whether the Umlaute are ok?



@Article{Buenning1935,
  author  = {Bünning, E.},
  title   = {Zur {K}enntnis der erblichen {T}agesperiodizität bei den 
{P}rimärblättern von \emph{{P}haseolus multiflorus}},

  journal = {Jb. wiss. Bot.},
  year    = {1935},
  volume  = {81},
  pages   = {411--418},
}

I do not get them even after using your proposal (Bookstyle Komascript 
English)


Wolfgang



ps: I also did this before in the bib file

https://tex.stackexchange.com/questions/81716/umlauts-in-a-jabref-managed-bibtex-file-and-file-encoding

#
That's right. If your bib-File is rather old, check in Jabref 
(Preferences->General->Encoding) that you use UTF8 and convert the file 
via |iconv -f ISO-8859-1 -t UTF-8 jabref_old.bib > jabref_new.bib|. It 
seems (tex.stackexchange.com/questions/97252/… 
<http://tex.stackexchange.com/questions/97252/in-which-order-should-i-load-inputenc-and-fontenc>) 
that |\usepackage[utf8]{inputenc}| is still needed, too. – mpy 
<https://tex.stackexchange.com/users/25449/mpy> Mar 2 '13 at 15:05 
<https://tex.stackexchange.com/questions/81716/umlauts-in-a-jabref-managed-bibtex-file-and-file-encoding#comment217914_100569> 


#
Thanks for the answer. I'll try this next week and let you know whether 
it works fine. @mpy Thank you too for your comment. I never came across 
|iconv| so far. – halirutan 
<https://tex.stackexchange.com/users/18927/halirutan> Mar 2 '13 at 19:59 
<https://tex.stackexchange.com/questions/81716/umlauts-in-a-jabref-managed-bibtex-file-and-file-encoding#comment217995_100569> 


#
3
But bibtex does not handle some utf8 characters (umlauts) from bib 
files. It will look fine in JabRef but will give errors when compiling. 
Switching to biblatex/biber solves the issue. – remus 
<https://tex.stackexchange.com/users/28053/remus> Apr 24 '13 at 19:41 
<https://tex.stackexchange.com/questions/81716/umlauts-in-a-jabref-managed-bibtex-file-and-file-encoding#comment242896_100569>


however, I tried this one in the preamplewhich was refused by Lyx since 
utf8 was already defined:


|\usepackage[utf8]{inputenc}
|

|do I need to include inputenc and where would I do that?|

|Wolfgang
|

Re: Biber Biblatex Lyx Jabref




On 03.04.19 16:30, Jürgen Spitzmüller wrote:
As with BibTeX, the encoding should ideally match the encoding of he 
document. If it differs, you can add bibencoding=utf8 to Document > 
Settings > Bibliography > Citation Style > Options


Thanks, Jürgen. Could you or somebody else kindly try this one, to see 
whether the Umlaute are ok?



@Article{Buenning1935,
  author  = {Bünning, E.},
  title   = {Zur {K}enntnis der erblichen {T}agesperiodizität bei den 
{P}rimärblättern von \emph{{P}haseolus multiflorus}},

  journal = {Jb. wiss. Bot.},
  year    = {1935},
  volume  = {81},
  pages   = {411--418},
}

I do not get them even after using your proposal (Bookstyle Komascript 
English)


Wolfgang

Re: Biber Biblatex Lyx Jabref

2019-04-03 Thread Jürgen Spitzmüller

Am Mi., 3. Apr. 2019 um 16:20 Uhr schrieb Wolfgang Engelmann <
engelm...@uni-tuebingen.de>:

> Is standard coding UTF8 ok?
>

As with BibTeX, the encoding should ideally match the encoding of he
document. If it differs, you can add bibencoding=utf8 to Document >
Settings > Bibliography > Citation Style > Options

Jürgen

Re: Biber Biblatex Lyx Jabref




On 03.04.19 15:53, Axel Dessecker wrote:

Wolfgang,

Am Mittwoch, 3. April 2019, 15:47:58 CEST schrieb Jürgen Spitzmüller:

Am Mi., 3. Apr. 2019 um 15:36 Uhr schrieb Wolfgang Engelmann <

engelm...@uni-tuebingen.de>:

I read this and made the settings, but can't find under
tools>preferences>output>latex the setting for biber.

It should be listed in Bibliography Generation > Processor (given biber is
correctly installed).
But you shouldn't need to set it explicitly. Biber is used if "Automatic"
is set.


What about jabref? special settings for biblatex?

I don't use jabref.

Jürgen

You can select a biblatex mode in JabRef.

Axel


Thanks, Axel, yes. I had selected it already under 
>options>preferences>standard bibliography mode


Is standard coding UTF8 ok?

Wolfgang

Re: Biber Biblatex Lyx Jabref



On 03.04.19 15:47, Jürgen Spitzmüller wrote:
Am Mi., 3. Apr. 2019 um 15:36 Uhr schrieb Wolfgang Engelmann 
mailto:engelm...@uni-tuebingen.de>>:


I read this and made the settings, but can't find under
tools>preferences>output>latex the setting for biber.


It should be listed in Bibliography Generation > Processor (given 
biber is correctly installed).
But you shouldn't need to set it explicitly. Biber is used if 
"Automatic" is set.


I did not have biber installed. Will try now.

Thanks a lot, Jürgen

Wolfgang


What about jabref? special settings for biblatex?

I don't use jabref.

Jürgen

Re: Biber Biblatex Lyx Jabref

2019-04-03 Thread Axel Dessecker

Wolfgang,

Am Mittwoch, 3. April 2019, 15:47:58 CEST schrieb Jürgen Spitzmüller:
> Am Mi., 3. Apr. 2019 um 15:36 Uhr schrieb Wolfgang Engelmann <
> 
> engelm...@uni-tuebingen.de>:
> > I read this and made the settings, but can't find under
> > tools>preferences>output>latex the setting for biber.
> 
> It should be listed in Bibliography Generation > Processor (given biber is
> correctly installed).
> But you shouldn't need to set it explicitly. Biber is used if "Automatic"
> is set.
> 
> > What about jabref? special settings for biblatex?
> 
> I don't use jabref.
> 
> Jürgen

You can select a biblatex mode in JabRef.

Axel

Re: Biber Biblatex Lyx Jabref

2019-04-03 Thread Jürgen Spitzmüller

Am Mi., 3. Apr. 2019 um 15:36 Uhr schrieb Wolfgang Engelmann <
engelm...@uni-tuebingen.de>:

> I read this and made the settings, but can't find under
> tools>preferences>output>latex the setting for biber.
>

It should be listed in Bibliography Generation > Processor (given biber is
correctly installed).
But you shouldn't need to set it explicitly. Biber is used if "Automatic"
is set.

> What about jabref? special settings for biblatex?
>
I don't use jabref.

Jürgen

Re: Biber Biblatex Lyx Jabref



On 03.04.19 15:15, Jürgen Spitzmüller wrote:
Am Mi., 3. Apr. 2019 um 15:07 Uhr schrieb Wolfgang Engelmann 
mailto:engelm...@uni-tuebingen.de>>:


Where can I get infos re Biber Biblatex Jabref Lyx?


UserGuide, 6.5.2.2.


I read this and made the settings, but can't find under 
tools>preferences>output>latex the setting for biber.


What about jabref? special settings for biblatex?

Wolfgang



and

https://wiki.lyx.org/BibTeX/Biblatex

Jürgen

Re: Biber Biblatex Lyx Jabref

2019-04-03 Thread Jürgen Spitzmüller

Am Mi., 3. Apr. 2019 um 15:07 Uhr schrieb Wolfgang Engelmann <
engelm...@uni-tuebingen.de>:

> Where can I get infos re Biber Biblatex Jabref Lyx?
>

UserGuide, 6.5.2.2.

and

https://wiki.lyx.org/BibTeX/Biblatex

Jürgen

Biber Biblatex Lyx Jabref


Where can I get infos re Biber Biblatex Jabref Lyx?

This one seems to be a bit old:

https://texwelt.de/wissen/fragen/2768/biblatex-und-biber-mit-lyx

Where does biber come into play?

In

https://texwelt.de/wissen/fragen/2768/biblatex-und-biber-mit-lyx

the settings are mainly done in the preamble. Is this recommended? Could 
somebody supply an example preamble for it?


What has to be done on the Jabref side?

Thanks,

Wolfgang

Re: cannot produce PDF from classicthesis-Lyx-v4.2_biblatex-biber in Mageia6


Günter,

thanks for your comment and tips, I'm not giving up yet.

I experienced exactly the same in openSUSE Leap, first neither the 
bibtex-version nor the biber-version worked until all in a sudden both 
did out of the blue.


Obviously there are few people using Miede's thesis. It produces 
beautiful documents - I use it for Linguistic papers.


If successful I will revert back to you.

Cheers and thanks again.

Michael


Am 31.07.2017 um 22:33 schrieb Guenter Milde:

On 2017-07-31, Michael Berger wrote:


Hi Günter,
let me recall: with 'Tools > Reconfigure' done I still see
in 'Documents > Settings > Bibliography > Bibliography Generation >
  > Processor'
   * Default
   * bibtex
   * bibtex8
wheras I should have
   * Default
   * biber
   * bibtex
   * bibtex8
Is 'biber' installed or not: see the screenshot

The screenshot and it does not help. I don't have any idea about Mageia6.

But if reconfigure does not make "biber" appear, biber is not installed---at
least not in at a place where LyX can find it.


I have Mageia 6, KDE

You may try in a terminal the commands `biber --help`
and `which biber` to see whether it works and where it is installed (if it
is).
   
Ultimatively, you should look for help with someone knowing Mageia and TeX

at Mageia.

Günter

Re: cannot produce PDF from classicthesis-Lyx-v4.2_biblatex-biber in Mageia6

2017-07-31 Thread Guenter Milde

On 2017-07-31, Michael Berger wrote:

> Hi Günter,

> let me recall: with 'Tools > Reconfigure' done I still see
> in 'Documents > Settings > Bibliography > Bibliography Generation >
>  > Processor'

>   * Default
>   * bibtex
>   * bibtex8

> wheras I should have

>   * Default
>   * biber
>   * bibtex
>   * bibtex8

> Is 'biber' installed or not: see the screenshot

The screenshot and it does not help. I don't have any idea about Mageia6.

But if reconfigure does not make "biber" appear, biber is not installed---at
least not in at a place where LyX can find it.

> I have Mageia 6, KDE

You may try in a terminal the commands `biber --help`
and `which biber` to see whether it works and where it is installed (if it
is).

Ultimatively, you should look for help with someone knowing Mageia and TeX
at Mageia.

Günter

Re: cannot produce PDF from classicthesis-Lyx-v4.2_biblatex-biber in Mageia6

2017-07-31 Thread Kornel Benko

Am Montag, 31. Juli 2017 um 17:43:46, schrieb Michael Berger 
> 
> Is 'biber' installed or not: see the screenshot
> 

Your screenshot does not show if biber is installed.
And, if it is, we cannot see if your PATH setting is correct.

Kornel

signature.asc
Description: This is a digitally signed message part.

Re: cannot produce PDF from classicthesis-Lyx-v4.2_biblatex-biber in Mageia6


Hi Günter,

let me recall: with 'Tools > Reconfigure' done I still see
in 'Documents > Settings > Bibliography > Bibliography Generation >
 > Processor'

 * Default
 * bibtex
 * bibtex8

wheras I should have

 * Default
 * biber
 * bibtex
 * bibtex8

Is 'biber' installed or not: see the screenshot

I have Mageia 6, KDE

As a layman I have no idea if this info is helpfull. If it is I still 
don't know what to do.


Michael


Am 31.07.2017 um 10:07 schrieb Guenter Milde:

On 2017-07-31, Michael Berger wrote:

..
..

Making "biber" available in Mageia6 is not the task of LyX developers.
Maybe it is alredy available but not installed as LyX dependency, maybe it
is missing. Ask the distribution packagers or file a bug to Mageia6.


...

Günter

...

classicthesis-Lyx-v4.2_biblatex-biber did compile to PDF.
Cheers and thanks,
Michael
[-- Skipped Type: text/html --]

Re: cannot produce PDF of classicthesis-Lyx-v4.2_biblatex-biber in Mageia6


Thanks Günter,

I did 'Reconfigure' several times. And for sure, the complete texlive 
(as offered under Mageia6) is installed. I will further check if biber 
is missing/installed on my system.


Michael


Am 31.07.2017 um 10:07 schrieb Guenter Milde:

On 2017-07-31, Michael Berger wrote:


I found that classicthesis-Lyx-v4.2_biblatex-bibtex8 compiles to PDF in
Mageia6  whereas classicthesis-Lyx-v4.2_biblatex-biber does not.
'Documents > Settings > Bibliography > Bibliography Generation >
Processor' is expected to show
   * Default
   * biber
   * bibtex
   * bibtex8
This is what I see in openSUSE Leap 42.2 and accordingly
classicthesis-Lyx-v4.2_biblatex-biber produces a perfect PDF.
Whereas in Mageia6 I can only see
   * Default
   * bibtex
   * bibtex8
so, 'biber' is (still) missing and therefor (in my opinion as an
ordinary user) no PDF output is generated.

The list shows what is (was) available on the system the last time you run
"(re)configure".


Are the developers aware of this and will "biber" be made available in
Mageia6 soon?

Making "biber" available in Mageia6 is not the task of LyX developers.
Maybe it is alredy available but not installed as LyX dependency, maybe it
is missing. Ask the distribution packagers or file a bug to Mageia6.

After installing "biber", you must make LyX aware of this: open LyX and run
Tools>Reconfigure.

Günter






I should mention that in the earlier days of openSUSE Leap 42.2 neither
classicthesis-Lyx-v4.2_biblatex-bibtex8 nor
classicthesis-Lyx-v4.2_biblatex-biber did compile to PDF.
Cheers and thanks,
Michael
[-- Skipped Type: text/html --]

Re: cannot produce PDF of classicthesis-Lyx-v4.2_biblatex-biber in Mageia6

2017-07-31 Thread Guenter Milde

On 2017-07-31, Michael Berger wrote:

> I found that classicthesis-Lyx-v4.2_biblatex-bibtex8 compiles to PDF in 
> Mageia6  whereas classicthesis-Lyx-v4.2_biblatex-biber does not.

> 'Documents > Settings > Bibliography > Bibliography Generation > 
> Processor' is expected to show

>   * Default
>   * biber
>   * bibtex
>   * bibtex8

> This is what I see in openSUSE Leap 42.2 and accordingly 
> classicthesis-Lyx-v4.2_biblatex-biber produces a perfect PDF.

> Whereas in Mageia6 I can only see

>   * Default
>   * bibtex
>   * bibtex8

> so, 'biber' is (still) missing and therefor (in my opinion as an 
> ordinary user) no PDF output is generated.

The list shows what is (was) available on the system the last time you run
"(re)configure".

> Are the developers aware of this and will "biber" be made available in 
> Mageia6 soon?

Making "biber" available in Mageia6 is not the task of LyX developers.
Maybe it is alredy available but not installed as LyX dependency, maybe it
is missing. Ask the distribution packagers or file a bug to Mageia6.

After installing "biber", you must make LyX aware of this: open LyX and run
Tools>Reconfigure.

Günter

> I should mention that in the earlier days of openSUSE Leap 42.2 neither 
> classicthesis-Lyx-v4.2_biblatex-bibtex8 nor 
> classicthesis-Lyx-v4.2_biblatex-biber did compile to PDF.

> Cheers and thanks,
> Michael

> [-- Skipped Type: text/html --]

cannot produce PDF of classicthesis-Lyx-v4.2_biblatex-biber in Mageia6


Hello,

I found that classicthesis-Lyx-v4.2_biblatex-bibtex8 compiles to PDF in 
Mageia6  whereas classicthesis-Lyx-v4.2_biblatex-biber does not.


'Documents > Settings > Bibliography > Bibliography Generation > 
Processor' is expected to show


 * Default
 * biber
 * bibtex
 * bibtex8

This is what I see in openSUSE Leap 42.2 and accordingly 
classicthesis-Lyx-v4.2_biblatex-biber produces a perfect PDF.


Whereas in Mageia6 I can only see

 * Default
 * bibtex
 * bibtex8

so, 'biber' is (still) missing and therefor (in my opinion as an 
ordinary user) no PDF output is generated.


Are the developers aware of this and will "biber" be made available in 
Mageia6 soon?


I should mention that in the earlier days of openSUSE Leap 42.2 neither 
classicthesis-Lyx-v4.2_biblatex-bibtex8 nor 
classicthesis-Lyx-v4.2_biblatex-biber did compile to PDF.


Cheers and thanks,
Michael

Re: Biber and biblatex issue on lyx

2016-10-17 Thread Riccardo

Perfect. Thanks.
Riccardo

2016-10-17 12:06 GMT+02:00 Charles de Miramon :

> Riccardo wrote:
>
> > Hello,
> > I have the following configuration:
> >
> >
> >- texlive-full (including texlive-bibtex-extra) from unofficial
> >    ppa:jonathonf/texlive-2016
> >- biber 2.5
> >- Lyx 2.2.1 from ppa:lyx-devel/release
> >
> >
> > After the last update, LyX show me a compatibility error message.
> >
> > [761] Utils.pm:165> ERROR - Error: Found biblatex control file version
> > [3.2,
> > expected version 3.1.
> >
> > But:
> >
> >- biber version is 2.5 (system-wide, and no other versions present
> >anywhere)
> >- documentations suggest biblatex 3.4. The .bcf file in the folder has
> >the following header:
> >
> > 
> > https://sourceforge.net/projects/biblatex";>
> >
> > Can you help me fix this? The bibliography of my document results now in
> > an empty page. I'm asking here since my system appears to have the
> correct
> > packages. For completeness, I "Reconfigured" lyx just after the package
> > update.
> > Riccardo
>
> You need to install biber 2.6 which is not yet packaged as far as I know
> for
> ubuntu.
>
> 1) uninstall biber 2.5
> 2) download https://sourceforge.net/projects/biblatex-biber/files/
> biblatex-biber/current/binaries/Linux/
> 3) extract it and install it as root in /usr/local/bin
>
>

Re: Biber and biblatex issue on lyx

2016-10-17 Thread Charles de Miramon

Riccardo wrote:

> Hello,
> I have the following configuration:
> 
> 
>- texlive-full (including texlive-bibtex-extra) from unofficial
>ppa:jonathonf/texlive-2016
>- biber 2.5
>- Lyx 2.2.1 from ppa:lyx-devel/release
> 
> 
> After the last update, LyX show me a compatibility error message.
> 
> [761] Utils.pm:165> ERROR - Error: Found biblatex control file version
> [3.2,
> expected version 3.1.
> 
> But:
> 
>- biber version is 2.5 (system-wide, and no other versions present
>anywhere)
>- documentations suggest biblatex 3.4. The .bcf file in the folder has
>the following header:
> 
> 
> https://sourceforge.net/projects/biblatex";>
> 
> Can you help me fix this? The bibliography of my document results now in
> an empty page. I'm asking here since my system appears to have the correct
> packages. For completeness, I "Reconfigured" lyx just after the package
> update.
> Riccardo

You need to install biber 2.6 which is not yet packaged as far as I know for 
ubuntu.

1) uninstall biber 2.5
2) download 
https://sourceforge.net/projects/biblatex-biber/files/biblatex-biber/current/binaries/Linux/
3) extract it and install it as root in /usr/local/bin

Biber and biblatex issue on lyx

2016-10-17 Thread Riccardo

Hello,
I have the following configuration:


   - texlive-full (including texlive-bibtex-extra) from unofficial
   ppa:jonathonf/texlive-2016
   - biber 2.5
   - Lyx 2.2.1 from ppa:lyx-devel/release


After the last update, LyX show me a compatibility error message.

[761] Utils.pm:165> ERROR - Error: Found biblatex control file version 3.2,
expected version 3.1.

But:

   - biber version is 2.5 (system-wide, and no other versions present
   anywhere)
   - documentations suggest biblatex 3.4. The .bcf file in the folder has
   the following header:


https://sourceforge.net/projects/biblatex";>

Can you help me fix this? The bibliography of my document results now in an
empty page. I'm asking here since my system appears to have the correct
packages. For completeness, I "Reconfigured" lyx just after the package
update.
Riccardo

Re: biber

2016-05-11 Thread Wolfgang Engelmann


Thanks for your advice, Påvel
Wolfgang

On 11.05.2016 21:56, Påvel Nicklasson wrote:

I think it would be better to put it in /usr/local/bin.
Restart and it will work.

2016-05-11 10:50 GMT+02:00 Wolfgang Engelmann 
mailto:engelm...@uni-tuebingen.de>>:




On 11.05.2016 10:46, Wolfgang Engelmann wrote:

I downloaded the latest biber-linux_x86_64.tar.gz from
SourceForge and extracted it in my /home/Downloads/
Can it remain there or where should it better be? Is a texhash
sufficient to make it available to lyx?
Wolfgang

The old biber is at
which biber
/usr/bin/biber
Could I just replace it with the ne one?
Wolfgang

Re: biber

2016-05-11 Thread Påvel Nicklasson

I think it would be better to put it in /usr/local/bin.
Restart and it will work.

2016-05-11 10:50 GMT+02:00 Wolfgang Engelmann :

>
>
> On 11.05.2016 10:46, Wolfgang Engelmann wrote:
>
>> I downloaded the latest biber-linux_x86_64.tar.gz from SourceForge and
>> extracted it in my /home/Downloads/
>> Can it remain there or where should it better be? Is a texhash sufficient
>> to make it available to lyx?
>> Wolfgang
>>
> The old biber is at
> which biber
> /usr/bin/biber
> Could I just replace it with the ne one?
> Wolfgang
>

Re: biber

2016-05-11 Thread Påvel Nicklasson

Of course you must also make biber executable.

2016-05-11 21:56 GMT+02:00 Påvel Nicklasson :

> I think it would be better to put it in /usr/local/bin.
> Restart and it will work.
>
> 2016-05-11 10:50 GMT+02:00 Wolfgang Engelmann 
> :
>
>>
>>
>> On 11.05.2016 10:46, Wolfgang Engelmann wrote:
>>
>>> I downloaded the latest biber-linux_x86_64.tar.gz from SourceForge and
>>> extracted it in my /home/Downloads/
>>> Can it remain there or where should it better be? Is a texhash
>>> sufficient to make it available to lyx?
>>> Wolfgang
>>>
>> The old biber is at
>> which biber
>> /usr/bin/biber
>> Could I just replace it with the ne one?
>> Wolfgang
>>
>
>

Re: biber

2016-05-11 Thread Wolfgang Engelmann




On 11.05.2016 10:46, Wolfgang Engelmann wrote:
I downloaded the latest biber-linux_x86_64.tar.gz from SourceForge and 
extracted it in my /home/Downloads/
Can it remain there or where should it better be? Is a texhash 
sufficient to make it available to lyx?

Wolfgang

The old biber is at
which biber
/usr/bin/biber
Could I just replace it with the ne one?
Wolfgang

biber

2016-05-11 Thread Wolfgang Engelmann

I downloaded the latest biber-linux_x86_64.tar.gz from SourceForge and 
extracted it in my /home/Downloads/
Can it remain there or where should it better be? Is a texhash 
sufficient to make it available to lyx?

Wolfgang

Re: biblatex.module and biber not available

2015-07-02 Thread Kornel Benko

Am Donnerstag, 2. Juli 2015 um 22:03:35, schrieb jezZiFeR 
> Thanks, Kornel,
> 
> it is strange, that MacTeX says, that biblatex is installed, and biber also. 
> Both are not available. I reinstalled both now, via teX Live Utility but it 
> did not change anything. I do not really understand where to add the file you 
> mention, because in my usr no layouts-directory exists (OSX10.10.3).

Start lyx.
Look into 'Help->About LyX->Version'.
For me it reads 'User directory: ~/.lyx2.1'

> I also checked my old system, there the biblatex.module ist not selected, but 
> biber. Here it does not even appear, so it is not only biblatex.module, but 
> also Biber I could not use. I would prefer Biber, because I have used it in 
> the last year and it worked well. Why does the Biber-module not appear in my 
> document preferences?

After installing you have to reconfigure.
Select 'Tools->Reconfigure'

> Thanks 
> Jess
> 
> 

Kornel

> 
> > Am 02.07.2015 um 21:44 schrieb Kornel Benko :
> > 
> > The error message says it all. Missing file "biblatex.module".
> > You may want to download it from 
> > "http://wiki.lyx.org/uploads/BibTeX/biblatex.module";
> > to your userdir/layouts directory.
> > 
> > Kornel
> > 
> > Am Donnerstag, 2. Juli 2015 um 19:29:24, schrieb Steve Burnham 
> > 
> >> -Steve Burnham
> >> 
> >> On Thu, Jul 2, 2015 at 1:10 PM jezZiFeR  wrote:
> >> 
> >>> Dear Steve, dear list,
> >>> 
> >>> I also used MacTeX. I use biblatex, because I use Dominik Wassenhovens
> >>> Styles. On my last setup this went very well with fiber, which I could not
> >>> find in the modules. Here are the minimal example of my LyX and
> >>> BibDesk-files, and also the error message, which is in German. BTW: I
> >>> reconfigured several times.
> >>> 
> >>> Thanks
> >>> 
> >>> 
> >>> 
> >>> 
> >>>> Am 02.07.2015 um 19:54 schrieb Steve Burnham :
> >>>> 
> >>>> I'm running the same setup as you are. I used the MacTeX distribution to
> >>> get TeX installed and then I just installed LyX. That is the only software
> >>> I had to install. I have only used BibTeX and that has always worked just
> >>> fine for me. I don't have any experience with biblatex though. If you want
> >>> to send an example file over I'm happy to test it out just to confirm if
> >>> there are issues or not but I don't know if I will be much help in the
> >>> trouble shooting area.
> >>>> 
> >>>> -Steve
> >>>> 
> >>>> On Thu, Jul 2, 2015 at 11:44 AM jezZiFeR  wrote:
> >>>> Hello,
> >>>> 
> >>>> I have installed TeX and LyX on my new Laptop (OSX10.10) and now LyX
> >>> could not find biber or the bib latex.module. In TeX Live Utility biber is
> >>> installed, biblatex also is. Do I have to install anything else, or why
> >>> could I not find the appropriate modules in document/preferences/modules.
> >>>> 
> >>>> Thanks for help
> >>>> Jess
> >>> 
> >>> 
> >> 
> >> I can confirm I have the same issue. For the benefit of the forum I'm
> >> attaching a screenshot of the error in English. I also checked my package
> >> repository to see if biber was installed per instructions on the LyX site (
> >> http://wiki.lyx.org/BibTeX/Biblatex) and you can see that it is in fact
> >> installed (also in the screen shot). To me the error gives the impression
> >> that there are just some LaTeX packages missing but I cannot figure out
> >> what in my research.
> >> 
> >> -Steve
> >> [image: Screen Shot 2015-07-02 at 13.19.06.png]
> 

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Description: This is a digitally signed message part.

Re: biblatex.module and biber not available

2015-07-02 Thread jezZiFeR

Thanks, Kornel,

it is strange, that MacTeX says, that biblatex is installed, and biber also. 
Both are not available. I reinstalled both now, via teX Live Utility but it did 
not change anything. I do not really understand where to add the file you 
mention, because in my usr no layouts-directory exists (OSX10.10.3).

I also checked my old system, there the biblatex.module ist not selected, but 
biber. Here it does not even appear, so it is not only biblatex.module, but 
also Biber I could not use. I would prefer Biber, because I have used it in the 
last year and it worked well. Why does the Biber-module not appear in my 
document preferences?

Thanks 
Jess






> Am 02.07.2015 um 21:44 schrieb Kornel Benko :
> 
> The error message says it all. Missing file "biblatex.module".
> You may want to download it from 
> "http://wiki.lyx.org/uploads/BibTeX/biblatex.module";
> to your userdir/layouts directory.
> 
>   Kornel
> 
> Am Donnerstag, 2. Juli 2015 um 19:29:24, schrieb Steve Burnham 
> 
>> -Steve Burnham
>> 
>> On Thu, Jul 2, 2015 at 1:10 PM jezZiFeR  wrote:
>> 
>>> Dear Steve, dear list,
>>> 
>>> I also used MacTeX. I use biblatex, because I use Dominik Wassenhovens
>>> Styles. On my last setup this went very well with fiber, which I could not
>>> find in the modules. Here are the minimal example of my LyX and
>>> BibDesk-files, and also the error message, which is in German. BTW: I
>>> reconfigured several times.
>>> 
>>> Thanks
>>> 
>>> 
>>> 
>>> 
>>>> Am 02.07.2015 um 19:54 schrieb Steve Burnham :
>>>> 
>>>> I'm running the same setup as you are. I used the MacTeX distribution to
>>> get TeX installed and then I just installed LyX. That is the only software
>>> I had to install. I have only used BibTeX and that has always worked just
>>> fine for me. I don't have any experience with biblatex though. If you want
>>> to send an example file over I'm happy to test it out just to confirm if
>>> there are issues or not but I don't know if I will be much help in the
>>> trouble shooting area.
>>>> 
>>>> -Steve
>>>> 
>>>> On Thu, Jul 2, 2015 at 11:44 AM jezZiFeR  wrote:
>>>> Hello,
>>>> 
>>>> I have installed TeX and LyX on my new Laptop (OSX10.10) and now LyX
>>> could not find biber or the bib latex.module. In TeX Live Utility biber is
>>> installed, biblatex also is. Do I have to install anything else, or why
>>> could I not find the appropriate modules in document/preferences/modules.
>>>> 
>>>> Thanks for help
>>>> Jess
>>> 
>>> 
>> 
>> I can confirm I have the same issue. For the benefit of the forum I'm
>> attaching a screenshot of the error in English. I also checked my package
>> repository to see if biber was installed per instructions on the LyX site (
>> http://wiki.lyx.org/BibTeX/Biblatex) and you can see that it is in fact
>> installed (also in the screen shot). To me the error gives the impression
>> that there are just some LaTeX packages missing but I cannot figure out
>> what in my research.
>> 
>> -Steve
>> [image: Screen Shot 2015-07-02 at 13.19.06.png]

Re: biblatex.module and biber not available

2015-07-02 Thread Kornel Benko

The error message says it all. Missing file "biblatex.module".
You may want to download it from 
"http://wiki.lyx.org/uploads/BibTeX/biblatex.module";
to your userdir/layouts directory.

Kornel

Am Donnerstag, 2. Juli 2015 um 19:29:24, schrieb Steve Burnham 

> -Steve Burnham
> 
> On Thu, Jul 2, 2015 at 1:10 PM jezZiFeR  wrote:
> 
> > Dear Steve, dear list,
> >
> > I also used MacTeX. I use biblatex, because I use Dominik Wassenhovens
> > Styles. On my last setup this went very well with fiber, which I could not
> > find in the modules. Here are the minimal example of my LyX and
> > BibDesk-files, and also the error message, which is in German. BTW: I
> > reconfigured several times.
> >
> > Thanks
> >
> >
> >
> >
> > > Am 02.07.2015 um 19:54 schrieb Steve Burnham :
> > >
> > > I'm running the same setup as you are. I used the MacTeX distribution to
> > get TeX installed and then I just installed LyX. That is the only software
> > I had to install. I have only used BibTeX and that has always worked just
> > fine for me. I don't have any experience with biblatex though. If you want
> > to send an example file over I'm happy to test it out just to confirm if
> > there are issues or not but I don't know if I will be much help in the
> > trouble shooting area.
> > >
> > > -Steve
> > >
> > > On Thu, Jul 2, 2015 at 11:44 AM jezZiFeR  wrote:
> > > Hello,
> > >
> > > I have installed TeX and LyX on my new Laptop (OSX10.10) and now LyX
> > could not find biber or the bib latex.module. In TeX Live Utility biber is
> > installed, biblatex also is. Do I have to install anything else, or why
> > could I not find the appropriate modules in document/preferences/modules.
> > >
> > > Thanks for help
> > > Jess
> >
> >
> 
> I can confirm I have the same issue. For the benefit of the forum I'm
> attaching a screenshot of the error in English. I also checked my package
> repository to see if biber was installed per instructions on the LyX site (
> http://wiki.lyx.org/BibTeX/Biblatex) and you can see that it is in fact
> installed (also in the screen shot). To me the error gives the impression
> that there are just some LaTeX packages missing but I cannot figure out
> what in my research.
> 
> -Steve
> [image: Screen Shot 2015-07-02 at 13.19.06.png]

signature.asc
Description: This is a digitally signed message part.

Re: biblatex.module and biber not available

2015-07-02 Thread jezZiFeR

Dear Steve, dear list,

I also used MacTeX. I use biblatex, because I use Dominik Wassenhovens Styles. 
On my last setup this went very well with fiber, which I could not find in the 
modules. Here are the minimal example of my LyX and BibDesk-files, and also the 
error message, which is in German. BTW: I reconfigured several times.

Thanks



Minimal.bib
Description: Binary data


Minimal.lyx
Description: Binary data



> Am 02.07.2015 um 19:54 schrieb Steve Burnham :
> 
> I'm running the same setup as you are. I used the MacTeX distribution to get 
> TeX installed and then I just installed LyX. That is the only software I had 
> to install. I have only used BibTeX and that has always worked just fine for 
> me. I don't have any experience with biblatex though. If you want to send an 
> example file over I'm happy to test it out just to confirm if there are 
> issues or not but I don't know if I will be much help in the trouble shooting 
> area.
> 
> -Steve
> 
> On Thu, Jul 2, 2015 at 11:44 AM jezZiFeR  wrote:
> Hello,
> 
> I have installed TeX and LyX on my new Laptop (OSX10.10) and now LyX could 
> not find biber or the bib latex.module. In TeX Live Utility biber is 
> installed, biblatex also is. Do I have to install anything else, or why could 
> I not find the appropriate modules in document/preferences/modules.
> 
> Thanks for help
> Jess

Re: biblatex.module and biber not available

2015-07-02 Thread Steve Burnham

I'm running the same setup as you are. I used the MacTeX distribution to
get TeX installed and then I just installed LyX. That is the only software
I had to install. I have only used BibTeX and that has always worked just
fine for me. I don't have any experience with biblatex though. If you want
to send an example file over I'm happy to test it out just to confirm if
there are issues or not but I don't know if I will be much help in the
trouble shooting area.

-Steve

On Thu, Jul 2, 2015 at 11:44 AM jezZiFeR  wrote:

> Hello,
>
> I have installed TeX and LyX on my new Laptop (OSX10.10) and now LyX could
> not find biber or the bib latex.module. In TeX Live Utility biber is
> installed, biblatex also is. Do I have to install anything else, or why
> could I not find the appropriate modules in document/preferences/modules.
>
> Thanks for help
> Jess

biblatex.module and biber not available

2015-07-02 Thread jezZiFeR

Hello,

I have installed TeX and LyX on my new Laptop (OSX10.10) and now LyX could not 
find biber or the bib latex.module. In TeX Live Utility biber is installed, 
biblatex also is. Do I have to install anything else, or why could I not find 
the appropriate modules in document/preferences/modules.

Thanks for help
Jess

Re: Biber produces errors where bibtex8 does not

2014-06-22 Thread Jürgen Spitzmüller

2014-06-21 16:29 GMT+02:00 Benedict Holland:

> Which begs the question why are they not automatically escaped? I have a
> bibliography of over 70 references. Getting an item error because there is
> a problem in my references which has an easy workaround but hours of work
> tracing it to the source is bad.
>
Well, this is a task of the bibliography manager, not LyX.


> Can lyx or biber do preprocessing to fix these bugs?
>

biber probably can.

Jürgen


> Thanks,
> ~Ben
>

Re: Biber produces errors where bibtex8 does not

2014-06-21 Thread Benedict Holland

Which begs the question why are they not automatically escaped? I have a
bibliography of over 70 references. Getting an item error because there is
a problem in my references which has an easy workaround but hours of work
tracing it to the source is bad. Can lyx or biber do preprocessing to fix
these bugs?

Thanks,
~Ben
On Jun 21, 2014 3:53 AM, "Jürgen Spitzmüller"  wrote:

> 2014-06-20 23:47 GMT+02:00 Benedict Holland:
>
>> So it appears that the reason is that biber does not escape the abstract
>> of a reference, even if it doesn't at all display that abstract.
>> Specifically this is occurring if a percentage sign is within the abstract.
>> Apparently all percentage signs must be escaped? Is this a bug with lyx or
>> with biber?
>>
>
>
> Actually, I wonder why bibtex8 does not choke on this. These kind of
> characters need to be escaped in general.
>
> Jürgen
>
>

Re: Biber produces errors where bibtex8 does not

2014-06-21 Thread Jürgen Spitzmüller

2014-06-20 23:47 GMT+02:00 Benedict Holland:

> So it appears that the reason is that biber does not escape the abstract
> of a reference, even if it doesn't at all display that abstract.
> Specifically this is occurring if a percentage sign is within the abstract.
> Apparently all percentage signs must be escaped? Is this a bug with lyx or
> with biber?
>


Actually, I wonder why bibtex8 does not choke on this. These kind of
characters need to be escaped in general.

Jürgen

Re: Biber produces errors where bibtex8 does not

2014-06-20 Thread Benedict Holland

So it appears that the reason is that biber does not escape the abstract of
a reference, even if it doesn't at all display that abstract. Specifically
this is occurring if a percentage sign is within the abstract. Apparently
all percentage signs must be escaped? Is this a bug with lyx or with biber?

~Ben


On Fri, Jun 20, 2014 at 5:21 PM, Benedict Holland <
benedict.m.holl...@gmail.com> wrote:

> Hello,
>
> I tried using biber and biblatex following the instructions here:
>
> http://wiki.lyx.org/BibTeX/Biblatex
>
> I received some very strange errors like "Lonely \item - perhaps a missing
> list environment" when some of my references were included. It was actually
> 2/35 which were throwing the error except the error wasn't anywhere near
> those references. Even so, there was nothing wrong with the references and
> they worked perfectly well when generated using bibtex8. I examined the two
> references which caused problems and they were exactly the same as any
> other reference. Again, they work in bibtex8 but not biber.
>
> Does anyone know what could cause this error? When these two references
> are removed the document compiles but I need these references.
>
> ~Ben
>

Biber produces errors where bibtex8 does not

2014-06-20 Thread Benedict Holland

Hello,

I tried using biber and biblatex following the instructions here:

http://wiki.lyx.org/BibTeX/Biblatex

I received some very strange errors like "Lonely \item - perhaps a missing
list environment" when some of my references were included. It was actually
2/35 which were throwing the error except the error wasn't anywhere near
those references. Even so, there was nothing wrong with the references and
they worked perfectly well when generated using bibtex8. I examined the two
references which caused problems and they were exactly the same as any
other reference. Again, they work in bibtex8 but not biber.

Does anyone know what could cause this error? When these two references are
removed the document compiles but I need these references.

~Ben

biber {Biblatex-citation-styles}

2013-11-12 Thread Christian Engler

Hello,
how could I enable the field "Text Before" at 'Insert'->'Citation'.
I'm using

/
\usepackage[backend=biber, style=authoryear-icomp,//natbib=true]{biblatex}
/

/
andinstalled the modul //Biblatex-citation-styles//as described here
http://wiki.lyx.org/BibTeX/Biblatex/

So my main question is:
"Text after" works, but how could I get the "Text before" working?

Even nicer would is be to get  more "Citation Styles" like "see [#ID]"
"cf. [#ID]" or "siehe" and "vgl."

is there a way?
best greetings
Chris

Re: Lyx biblatex biber jabref Mac OSX lion trouble

2013-06-02 Thread Aleksey Orekhov

Thanks, that really clears things up! I was wondering why I was able to do
relative paths until I started using biblatex. Fuller integration of
biblatex and lyx will be very welcome when it happens.

Best,
Aleksey


On Sun, Jun 2, 2013 at 11:17 AM, stefano franchi
wrote:

>
>
>
> On Tue, May 28, 2013 at 7:53 PM, Aleksey Orekhov wrote:
>
>>
>> Changing my preamble to  give the full path to the bib file
>>  solved the problem:
>>
>> before
>> %biblatex
>> \usepackage[style=ieee,natbib=true,backend=biber]{biblatex}
>> \addbibresource{Research.bib}
>>
>> after:
>> %biblatex
>> \usepackage[style=ieee,natbib=true,backend=biber]{biblatex}
>> \addbibresource{/Users/Aleksey/Desktop/Report/Research.bib}
>>
>> Lyx has trouble when relative paths are given here. Is this a bug?
>>
>>
>>
> This is a known issue with biblatex/lyx. Since you are giving the path to
> the bib files in the preamble and lyx copies everything over to a temp dir
> before compilation, there is no way it can unpack relative locations for
> bib files.
>
> Notice that the same problem would happen with regular bibtex if you were
> to enter a relative path to the  bib file (i.e. in the LaTeX \bibliography
> command) as ERT. If you rely on Lyx, instead (i.e. using the
> Insert>>List/TOC/bibtex Bibliography lyx command),  Lyx always converts the
> path to the bib file to an absolute one in the latex output (you can take a
> look at View>Source to verify this).
>
> The solution will come with a fuller integration of biblatex into lyx,
> which is hopefully not very far off.
>
> Cheers,
>
> Stefano
>
> --
> __
> Stefano Franchi
> Associate Research Professor
> Department of Hispanic StudiesPh:   +1 (979) 845-2125
> Texas A&M University  Fax:  +1 (979) 845-6421
> College Station, Texas, USA
>
> stef...@tamu.edu
> http://stefano.cleinias.org
>

Re: Lyx biblatex biber jabref Mac OSX lion trouble

2013-06-02 Thread stefano franchi

On Tue, May 28, 2013 at 7:53 PM, Aleksey Orekhov  wrote:

>
> Changing my preamble to  give the full path to the bib file
>  solved the problem:
>
> before
> %biblatex
> \usepackage[style=ieee,natbib=true,backend=biber]{biblatex}
> \addbibresource{Research.bib}
>
> after:
> %biblatex
> \usepackage[style=ieee,natbib=true,backend=biber]{biblatex}
> \addbibresource{/Users/Aleksey/Desktop/Report/Research.bib}
>
> Lyx has trouble when relative paths are given here. Is this a bug?
>
>
>
This is a known issue with biblatex/lyx. Since you are giving the path to
the bib files in the preamble and lyx copies everything over to a temp dir
before compilation, there is no way it can unpack relative locations for
bib files.

Notice that the same problem would happen with regular bibtex if you were
to enter a relative path to the  bib file (i.e. in the LaTeX \bibliography
command) as ERT. If you rely on Lyx, instead (i.e. using the
Insert>>List/TOC/bibtex Bibliography lyx command),  Lyx always converts the
path to the bib file to an absolute one in the latex output (you can take a
look at View>Source to verify this).

The solution will come with a fuller integration of biblatex into lyx,
which is hopefully not very far off.

Cheers,

Stefano

-- 
__
Stefano Franchi
Associate Research Professor
Department of Hispanic StudiesPh:   +1 (979) 845-2125
Texas A&M University  Fax:  +1 (979) 845-6421
College Station, Texas, USA

stef...@tamu.edu
http://stefano.cleinias.org

Re: Lyx biblatex biber jabref Mac OSX lion trouble

2013-05-28 Thread Aleksey Orekhov


Changing my preamble to  give the full path to the bib file
 solved the problem:

before
%biblatex
\usepackage[style=ieee,natbib=true,backend=biber]{biblatex}
\addbibresource{Research.bib}

after:
%biblatex
\usepackage[style=ieee,natbib=true,backend=biber]{biblatex}
\addbibresource{/Users/Aleksey/Desktop/Report/Research.bib}

Lyx has trouble when relative paths are given here. Is this a bug?

Lyx biblatex biber jabref Mac OSX lion trouble

2013-05-28 Thread Aleksey Orekhov

Hello,

   I've been trying to use biblatex in LYX with the Jabref interface for
   citations on Mac OSX Lion. I have followed all of the instructions I've been
   able to find online, and have gotten it to the point where, if I export plain
   latex from LYX and compile that, run biber, then recompile, I have exactly
   what I want.

For whatever reason, I can't achieve this through the lyx interface. The lyx log
indicates that lyx IS running biber, and I looked inside of the temporary folder
lyx is using and found that a ".bcf" file is created.

In fact, copying my ".bib" file into the temporary directory and running biber
there enables lyx to produce the correct output, but this is tedious to do each
time.

Even better, all I need for a relatively permanent fix is to copy my .bib file
into the LYX temporary directory:

/private/var/folders/s3/477kfcjd2zq_0mxfxpcrbznrgn/T/lyx_tmpdir.L14372/
/lyx_tmpbuf2

Once that is done, lyx can produce the correct output with no further
intervention. Is there any way I can get lyx to do this for me, or tell it to
properly point biber towards the file?

I am running biber v0.9.9 and lyx 2.0.6

Here is a snippet from the lyx log file that deals with biber.


Package biblatex Info: Input encoding 'utf8' detected. Package biblatex Info:
Automatic encoding selection. (biblatex) Assuming data encoding
'utf8'. \openout4 = `Report.bcf'.

Package biblatex Info: Trying to load bibliographic data... Package biblatex
Info: ... file 'Report.bbl' not found. No file Report.bbl. Package biblatex
Info: Reference section=0 on input line 26. Package biblatex Info: Reference
segment=0 on input line 26. (./Report.toc) \tf@toc=\write6 \openout6 =
`Report.toc'.


LaTeX Warning: Citation 'RichardE.Neopolitan' on page 1 undefined on input line
43.

(./0_Users_cruser42_Desktop_Report_diagrams_graphs_graph2fig.tex Missing
character: There is no ; in font nullfont! Missing character: There is no ; in
font nullfont! Missing character: There is no ; in font nullfont! Missing
character: There is no ; in font nullfont! Missing character: There is no ; in
font nullfont! )

LaTeX Warning: Empty bibliography on input line 97.

Package atveryend Info: Empty hook `BeforeClearDocument' on input line 98.
[1{/usr/local/texlive/2012/texmf-var/fonts/map/pdftex/updmap/pdftex.map}


]
Package atveryend Info: Empty hook `AfterLastShipout' on input line 98.
(./Report.aux) Package atveryend Info: Executing hook `AtVeryEndDocument' on
input line 98. Package atveryend Info: Executing hook `AtEndAfterFileList' on
input line 98. Package rerunfilecheck Info: File `Report.out' has not changed.
(rerunfilecheck) Checksum: 8828D2E1D1E10CEED47733C6437ABD14;237.

LaTeX Warning: There were undefined references.


Package biblatex Warning: Please (re)run Biber on the file: (biblatex)  
 Report (biblatex)and rerun LaTeX afterwards.

Package logreq Info: Writing requests to 'Report.run.xml'. \openout1 =
`Report.run.xml'.

Thanks, Aleksey

P.S. pardon the linebreaks, gmane insisted on 80 char limit per line.

Re: How to use biblatex-dw with biber or biblatex or bilatex8 in LyX…

2013-03-10 Thread stefano franchi

On Sun, Mar 10, 2013 at 10:47 AM, jezZiFeR  wrote:

> As I also have had several other problems witch my computer and with its
> permissions I am now looking for that. It could be, that LyX does not have
> the permissions to change its settings.
>
>
Hi Jess,

I am glad to hear I could be somewhat helpful. Now that  you know for sure
you a lyx problem, it should be easier to fix. Do not hesitate to come back
to the list with further questions.

Cheers,

Stefano

-- 
__
Stefano Franchi
Associate Research Professor
Department of Hispanic StudiesPh:   +1 (979) 845-2125
Texas A&M University  Fax:  +1 (979) 845-6421
College Station, Texas, USA

stef...@tamu.edu
http://stefano.cleinias.org

Re: How to use biblatex-dw with biber or biblatex or bilatex8 in LyX…

2013-03-10 Thread jezZiFeR

Dear Stefano,

thank you so much for your thorough answer, which really helped me. All of the 
procedures you described to test my TeX-installation worked fine, and for me it 
is LyX, which is not working correctly. As I also have had several other 
problems witch my computer and with its permissions I am now looking for that. 
It could be, that LyX does not have the permissions to change its settings.

I think this will take a little time now, I just wanted to let you know, that 
your instructions were very helpful, and that I could use LyX hopefully soon 
again.

Best
Jess





Am 09.03.2013 um 17:49 schrieb stefano franchi:

> 
> On Sat, Mar 9, 2013 at 10:10 AM, jezZiFeR  wrote:
> I could also open terminal, but I do not understand what to do then. What 
> exactly should I do on the desktop folder? There is the file, but I do not 
> know what to do with it, and I do not know how to compile manually.
> 
> I also do not know how to run biber. Do I not need to exchange my settings 
> then first? This is when LyX crashes all the times…
> 
> Hope you could help, thank you so much!
> Jess
> 
> Hi Jess,
> 
> what I am suggesting is that you try to issue the latex commands directly 
> (instead of lyx doing it for you in the background). That way you could see 
> if latex (and biber) are behaving properly, which would mean your problem is 
> with lyx. This is what you do.
> 
> 1. Open a terminal window. You will see a prompt, something ending with a $ 
> sign. From here on I will indicate the commands you need to enter by putting 
> them on a single line, preceded by the $ character. You need to type what 
> follows the $.
> 
> 2. change directory to the Desktop folder. You would type
> 
>$cd ~/Desktop 
> 
> (or the German equivalent, I'm not sure if the Mac translates the directory 
> names. I doubt it, though)
> 
> 
> 3. Check that both the .tex file and the .bib file are present in the 
> directory:
> 
>$ ls Minimal-Example-neu.tex
> 
>   $ ls Diss3.bib
> 
> In both cases you shoudl get back the name of the file(s). If they are not 
> present, you'll get an error message. In that case, go back to the finder and 
> moves the files to the desktop. Repeat step 3 until you are sure the files 
> are there (no error messages)
> 
> 4. compile the tex file with lualatex (this is latex with the lua backend, 
> which is what you had selected in your lyx file):
> 
>$lualatex Minimal-Example-neu.tex
> 
> If compilation works (as it should), you should see a lot of text being 
> spitted out on the terminal. At the end, on the last line, it should say:
> 
> Output written on Minimal-Example-neu.pdf
> 
> If not, then you have a problem with your tex installation. Stop here 
> 
> 5. Go to the Desktop in the Finder. Open Minimal-Example-neu.pdf in preview 
> or other pdf reader. You should see your example nicely typeset, but with no 
> references yet. It will show the ref keys in bold. This is as it should be, 
> you haven't run your bib processor yet (biber). You'll do that next
> 
> 6. Go back to the terminal. Check again that you are in the right directory:
> 
> $pwd
> 
> This means "present working directory". It should reply that you are in 
> /Users/Your-user-name/Desktop. If not, repeated step 2 above
> 
> 7. Run biber. You do that with the command:
> 
> biber Minimal-Example-neu
> 
> (notice that you don't type the .tex suffix this time)
> 
> Biber should run, read your bib file and analyze your references. It will 
> spit out a few lines to the terminal. Each line will begin with either "INFO" 
> or "WARNING" or "ERROR" You should only have "INFO" and "WARNING" lines. The 
> next to last line should tell you that Minimal-Example-neu.bbl has been 
> created. Here is the complete output when I run manually biber on your file:
> 
> INFO - This is Biber 1.5
> INFO - Logfile is 'Minimal-Example-neu.blg'
> INFO - Reading 'Minimal-Example-neu.bcf'
> INFO - Found 4 citekeys in bib section 0
> INFO - Processing section 0
> INFO - Looking for bibtex format file '/home/stefano/Desktop/Diss3.bib' for 
> section 0
> INFO - Decoding LaTeX character macros into UTF-8
> INFO - Found BibTeX data source '/home/stefano/Desktop/Diss3.bib'
> WARN - I didn't find a database entry for 'LeWitt:1999uq' (section 0)
> INFO - Overriding locale 'en_US.UTF-8' default tailoring 'variable = shifted' 
> with 'variable = non-ignorable'
> INFO - Sorting 'entry' list 'nty' keys
> INFO - No sort tailoring available for locale 'en_US.UTF-8'
> INFO - Writing

Re: How to use biblatex-dw with biber or biblatex or bilatex8 in LyX…

2013-03-09 Thread jezZiFeR

Dear Stefano,

I am sorry, I do not exactly understand what to do. I changed the name of my 
file to avoid spaces in it, and I also exported to LaTeX-format, as you wrote.

I could also open terminal, but I do not understand what to do then. What 
exactly should I do on the desktop folder? There is the file, but I do not know 
what to do with it, and I do not know how to compile manually.

I also do not know how to run biber. Do I not need to exchange my settings then 
first? This is when LyX crashes all the times…

Hope you could help, thank you so much!
Jess





Am 09.03.2013 um 16:54 schrieb stefano franchi:

> On Sat, Mar 9, 2013 at 9:33 AM, jezZiFeR  wrote:
> Dear list, dear Stefano,
> 
> thanks again. Well, first I tried to check via the terminal wether I get the 
> exact path back, which I did (even though I had to change from the german 
> »Schreibtisch« to »Desktop« again – which was just one of the last tries I 
> did before).
> 
> After that I checked, wether biber is active in the preferences. In fact, 
> biber was not, it was biblatex which was acive, so I tried to change that. 
> Every time I did LyX crashed with an error – I add the screenshot. But even 
> worse: for I wanted to have the screenshot in english language, I also tried 
> to change the language of LyX, and again it crashed. I seems that I could not 
> do any changes in the preferences without generating errors. I tried several 
> things. Sometimes LyX did not crash, but it also did not save the changes.
> 
> 
> 
> Well, one thing I could think of is that you have spaces in your filename. 
> Lyx can deal with them, but latex definitely does not like them. in my 
> experience.  So first of all I would rename the file Minimal-Example-neu.lyx
> 
> Then, just to be sure your problem is with lyx and not biblatex/latex/biber, 
> I would try the following:
> 
> 1. From lyx, export the file to latex format (File>>Export>>latex(luaTex)
> 
> 2. Open a terminal, move to the Desktop folder
> 
> 3. Compile the file manually with lualatex Minimal-Example-neu.tex
> 
> 4. run biber with biber minimal-Example.neu
> 
> 5. Run lualatex again twice  as in step 3
> 
> 
> If you get a pdf file, then your problem is with lyx or with the lyx/latex 
> communication process. If you don't, lyx is innocent.

Re: How to use biblatex-dw with biber or biblatex or bilatex8 in LyX…

2013-03-09 Thread stefano franchi

On Sat, Mar 9, 2013 at 9:33 AM, jezZiFeR  wrote:

> Dear list, dear Stefano,
>
> thanks again. Well, first I tried to check via the terminal wether I get
> the exact path back, which I did (even though I had to change from the
> german »Schreibtisch« to »Desktop« again – which was just one of the last
> tries I did before).
>
> After that I checked, wether biber is active in the preferences. In fact,
> biber was not, it was biblatex which was acive, so I tried to change that.
> Every time I did LyX crashed with an error – I add the screenshot. But even
> worse: for I wanted to have the screenshot in english language, I also
> tried to change the language of LyX, and again it crashed. I seems that I
> could not do any changes in the preferences without generating errors. I
> tried several things. Sometimes LyX did not crash, but it also did not save
> the changes.
>
>

Well, one thing I could think of is that you have spaces in your filename.
Lyx can deal with them, but latex definitely does not like them. in my
experience.  So first of all I would rename the file Minimal-Example-neu.lyx

Then, just to be sure your problem is with lyx and not
biblatex/latex/biber, I would try the following:

1. From lyx, export the file to latex format (File>>Export>>latex(luaTex)

2. Open a terminal, move to the Desktop folder

3. Compile the file manually with lualatex Minimal-Example-neu.tex

4. run biber with biber minimal-Example.neu

5. Run lualatex again twice  as in step 3

If you get a pdf file, then your problem is with lyx or with the lyx/latex
communication process. If you don't, lyx is innocent.

Cheers,

S.

-- 
__
Stefano Franchi
Associate Research Professor
Department of Hispanic StudiesPh:   +1 (979) 845-2125
Texas A&M University  Fax:  +1 (979) 845-6421
College Station, Texas, USA

stef...@tamu.edu
http://stefano.cleinias.org

Re: How to use biblatex-dw with biber or biblatex or bilatex8 in LyX…

2013-03-09 Thread jezZiFeR

Dear list, dear Stefano,thanks again. Well, first I tried to check via the terminal wether I get the exact path back, which I did (even though I had to change from the german »Schreibtisch« to »Desktop« again – which was just one of the last tries I did before).After that I checked, wether biber is active in the preferences. In fact, biber was not, it was biblatex which was acive, so I tried to change that. Every time I did LyX crashed with an error – I add the screenshot. But even worse: for I wanted to have the screenshot in english language, I also tried to change the language of LyX, and again it crashed. I seems that I could not do any changes in the preferences without generating errors. I tried several things. Sometimes LyX did not crash, but it also did not save the changes.So it seems I have a problem with LyX – does anybody know what I could do in this case?ThanksJessAm 09.03.2013 um 15:52 schrieb stefano franchi:On Sat, Mar 9, 2013 at 4:22 AM, jezZiFeR <jezzi...@gmail.com> wrote:
Dear Stefano and list-members,I tried some things, but in my case your file does not work. I change the path to my .bib-file on the desktop again, and I also turned back to natbib for the bibliography. Could it be, that there is something wrong with my absolute path for the -bib-file?
I have the bib-file on the desktop, and this is my path:/Users/ZZZ/Schreibtisch/Diss3.bib
JessHi Jess,
your new file works fine here as soon as I change the path in \addbibresource to /home/stefano/Desktop/Diss3.bibYou could take a look at the LaTeX and biber logs and check what they are telling you. Somehow biber is not finding your bib file, it seems to me. A capitalization error, perhaps? I think you are on a Mac. If you open the terminal and type
ls /Users/ZZZ/Schreibtisch/Diss3.bibdo you get the exact path back?

Re: How to use biblatex-dw with biber or biblatex or bilatex8 in LyX…

2013-03-09 Thread stefano franchi

On Sat, Mar 9, 2013 at 4:22 AM, jezZiFeR  wrote:

> Dear Stefano and list-members,
>
> I tried some things, but in my case your file does not work. I change the
> path to my .bib-file on the desktop again, and I also turned back to natbib
> for the bibliography. Could it be, that there is something wrong with my
> absolute path for the -bib-file?
>
> I have the bib-file on the desktop, and this is my path:
> /Users/ZZZ/Schreibtisch/Diss3.bib
>
> Jess
>
>
Hi Jess,


your new file works fine here as soon as I change the path in
\addbibresource to /home/stefano/Desktop/Diss3.bib


You could take a look at  the LaTeX and biber  logs and check  what they
are telling you. Somehow biber is not finding your bib file, it seems to
me. A capitalization error, perhaps? I think you are on a Mac. If you open
the terminal and type

ls  /Users/ZZZ/Schreibtisch/Diss3.bib

do you get the exact path back?

Stefano



-- 
__
Stefano Franchi
Associate Research Professor
Department of Hispanic StudiesPh:   +1 (979) 845-2125
Texas A&M University  Fax:  +1 (979) 845-6421
College Station, Texas, USA

stef...@tamu.edu
http://stefano.cleinias.org

Re: How to use biblatex-dw with biber or biblatex or bilatex8 in LyX…

2013-03-09 Thread jezZiFeR

Dear Stefano and list-members,I tried some things, but in my case your file does not work. I change the path to my .bib-file on the desktop again, and I also turned back to natbib for the bibliography. Could it be, that there is something wrong with my absolute path for the -bib-file?I have the bib-file on the desktop, and this is my path:/Users/ZZZ/Schreibtisch/Diss3.bibJess

Minimal Example neu.lyx
Description: Binary data
Am 08.03.2013 um 23:57 schrieb stefano franchi:On Fri, Mar 8, 2013 at 1:04 PM, jezZiFeR  wrote:
Dear Stefano,As far as I can see it still does not work. So here I send a minimal example. I hope it is okay to send it privately, or should I send to the list?
Hi Jess,it is always better to reply to the whole list---more people will be able to help. Your file works here. Here is what I did:- I had to change the \addbibresource line to make it point to where I had downloaded your .bib file. 
-  I changed the bibliography to "default"  instead of natbib because I do not have the biblatrex module here on my laptop.- Finally, I commented out the line \bibliography in your preamble---you don't need that with biblatex.
My guess is still that your problem is (or hopefully was) with the \addbibresource line. Let me know if it compiles with the correct refes on your machine. I enclose below both the pdf and the lyx file. Notice that that pdf has a missing reference for LeWitt199:uk But that's how it should be because there is no such key in your Diss3.bib file.

Re: How to use biblatex-dw with biber or biblatex or bilatex8 in LyX…

2013-03-08 Thread stefano franchi

On Fri, Mar 8, 2013 at 11:19 AM, jezZiFeR  wrote:
Dear list,

I tried to use biblatex, biblatex 8 and biber with biblatex-dw, and in all
three cases – if I got them working, which I am not sure of – I have the
same problem: the citations are never shown properly in the rendered files
–  just the cite key in a bold font is displayed.


Jess,

>From your description it seems that biber or bibtex (depending which
processor you you choose in Document>>settings>>bibliography) are not
finding your .bib file. This is typically the reason for your output
showing the bibtex keys (in bold) instead of the references.

Also, did you tell biblatex where to look for your bib file>? You need a
line like the following in your preamble:

\addbibresource{/absolute/path/to/my/bibfile.bib}

Notice that the .bib extension IS REQUIRED

Could you post a minimal example, if the above does not work?

Cheers,

S.



-- 
__
Stefano Franchi
Associate Research Professor
Department of Hispanic StudiesPh:   +1 (979) 845-2125
Texas A&M University  Fax:  +1 (979) 845-6421
College Station, Texas, USA

stef...@tamu.edu
http://stefano.cleinias.org

How to use biblatex-dw with biber or biblatex or bilatex8 in LyX…

2013-03-08 Thread jezZiFeR

Dear list,

I hope, that somebody could help me. I do have very basic and hopefully simple 
problem. I use LyX 2.0.5.1 on OSX 10.6.8 and have installed the recent version 
of biblatex.

I have followed the installation instructions from this site:
http://wiki.lyx.org/BibTeX/Biblatex

I tried to use biblatex, biblatex 8 and biber with biblatex-dw, and in all 
three cases – if I got them working, which I am not sure of – I have the same 
problem: the citations are never shown properly in the rendered files –  just 
the cite key in a bold font is displayed.

In the document preferences I have now selected Natbib, but I have also tried 
Standard.

I think there must be something wrong, which does not regard to biber or 
biblatex, could that be? and, btw, which of the three possibilities would you 
recommend?

Thank you!
Jess

Re: Biber documentation

2012-11-29 Thread stefano franchi

Hi Wolfgang,

the Vancouver style you linked to is a .bst file. In other words, it is a
style file for use with bibtex. It cannot be used with biblatex. As far as
I know, there is no Vancouver style available for biblatex. You'll have to
start with a standard style, e.g. authoryear, and then modified it by hand.
That is a painful task when your knoledge of biblatex is still limited.
One alternative is to switch to bibtex.

Cheers,

Stefano

On Thu, Nov 29, 2012 at 10:22 AM, Wolfgang Engelmann <
engelm...@uni-tuebingen.de> wrote:

> **
>
> Am Mittwoch, 28. November 2012, 20:02:55 schrieb stefano franchi:
>
> Thanks, Stefano, for your help and advices and references. Will work on
> it. By the way, Springer publisher wants the Vancouver style.
>
> In the net it is mentioned:
>
> by
> TeXnical 
> Designson
>  Tue Aug 30th, 2011
> LaTeX has a Vancouver citation style which you can use and can be found
> here .
> As far as doing it in LyX, it is possible. This 
> PDFshould explain 
> things.
>
> But the PDF mentioned does not mention LyX at all.
>
> Is there a Vancouver.layout file available?
>
> Wolfgang
>

-- 
__
Stefano Franchi
Associate Research Professor
Department of Hispanic StudiesPh:   +1 (979) 845-2125
Texas A&M University  Fax:  +1 (979) 845-6421
College Station, Texas, USA

stef...@tamu.edu
http://stefano.cleinias.org

Re: Biber documentation

2012-11-29 Thread Alex Vergara Gil


Am Mittwoch, 28. November 2012, 20:02:55 schrieb stefano franchi:
Thanks, Stefano, for your help and advices and references. Will work on it. 
By the way, Springer publisher wants the Vancouver style.

In the net it is mentioned:
by TeXnical Designs on Tue Aug 30th, 2011
LaTeX has a Vancouver citation style which you can use and can be found 
here. As far as doing it in LyX, it is possible. This PDF should explain 
things.

But the PDF mentioned does not mention LyX at all.
Is there a Vancouver.layout file available?
Wolfgang


You don't need the layout because it is present in latex, if you use bibtex 
just double click in the gray box and choose the vancouver style


Regards

Alex

Re: Biber documentation

2012-11-29 Thread Wolfgang Engelmann

Am Mittwoch, 28. November 2012, 20:02:55 schrieb stefano franchi:

Thanks, Stefano, for your help and advices and references. Will work on it. 
By the way, Springer publisher wants the Vancouver style. 
In the net it is mentioned:

by TeXnical Designs on Tue Aug 30th, 2011 
LaTeX has a Vancouver citation style which you can use and can be found 
here. As far as doing it in LyX, it is possible. This PDF should explain 
things.
But the PDF mentioned does not mention LyX at all. 

Is there a Vancouver.layout file available?

Wolfgang
<>

Re: Biber documentation

2012-11-28 Thread stefano franchi

On Wed, Nov 28, 2012 at 12:38 PM, Wolfgang Engelmann <
engelm...@uni-tuebingen.de> wrote:

> Am Mittwoch, 28. November 2012, 14:20:00 schrieb stefano franchi:
> E.g. with my
> \usepackage[backend=biber, style=authoryear,natbib=true]{biblatex}
> I get e.g.
> Jang, Sung-Wuk et al. (2010). “N-acetylserotonin activates TrkB receptor in
> a circadian rhythm.” eng. In: P Natl Acad Sci USA 107, pp. 3876–3881.
> while I would like to have
> Jang, S.-W. et al. (2010). N-acetylserotonin activates TrkB receptor in a
> circadian rhythm. In: P Natl Acad Sci USA 107, pp. 3876–3881.
>
> and
> Jewett, M. E., D. W. Rimmer, et al. (1997). “Human circadian pacemaker is
> sensitive to light throughout subjective day without evidence of
> transients”. In: Am J Physiol 273, R1800–R1809.
> while I want
> Jewett, M. E. et al. (1997). Human circadian pacemaker is sensitive to
> light throughout subjective day without evidence of transients. In: Am J
> Physiol 273, R1800–R1809.
>
>
The "eng." is probably coming from your citation--an abbreviation for
"english" in the Note field perhaps? Check your bib file, and see where it
comes from.
Once you have found the filed, you can simply erase its content. In case of
multiple citations having the same issue, you can exclude the filed from
the output with the command

\DeclareFieldFormat{note}{}

in your preamble (for the note filed, of course, change "note" to the name
of the field that contains spurious data if otherwise)

For the second problem, you control how many authors are cited with a
biblatex option. Manual, p.52:

maxnames= default: 3
A threshold affecting all lists of names (author, editor, etc.). If a list
exceeds this threshold,
i. e., if it holds more than  names, it is automatically truncated
according to the
setting of the minnames option. maxnames is the master option which sets
both maxbibnames
and maxcitenames.

minnames= default: 1
A limit affecting all lists of names (author, editor, etc.). If a list
holds more than
hmaxnamesi names, it is automatically truncated to  names. The

value must be smaller than or equal to . minnames is the master
option which
sets both minbibnames and mincitenames.

In brief,, setting maxbibnames=1 (in the call to biblatex or, even better,
within a \ExecuteBibliographyOptions command in the preamble, see manual,
p.71), should solve your problem with citation 2.

Let me say, however, that there is no easy way into biblatex. The package
is so flexible and so powerful that, inevitably, the learning curve is a
bit steep. You should definitely read chapter 3 of the manual (User guide)
and check out the numerous examples that come with the package. In Tex Live
they are installed in
usr/local/texlive/2012/texmf-dist/doc/latex/biblatex/examples/
searching for a file such as 50-style-authoryear.pdf (one of the examples)
should lead you to the right directory if otherwise.
More generally, you can ask more complex questions (how to customize
styles, etcetera) on Comp,text.tex, where a lot of biblatex users hang out.

Cheers,

Stefano

-- 
__
Stefano Franchi
Associate Research Professor
Department of Hispanic StudiesPh:   +1 (979) 845-2125
Texas A&M University  Fax:  +1 (979) 845-6421
College Station, Texas, USA

stef...@tamu.edu
http://stefano.cleinias.org

Re: Biber documentation

2012-11-28 Thread Wolfgang Engelmann

Am Mittwoch, 28. November 2012, 14:20:00 schrieb stefano franchi:
> The biblatex manual should be installed on your system by your Tex
> distribution. The command
> 
> >texdoc biblatex
> 
> should bring it up. 

Thanks, Stefano

Its a long documentation and not easy for the novice to find what one 
needs/wants. Is there somewhere a document with various examples for the 
citation styles and the various reference styles.

E.g. with my 
\usepackage[backend=biber, style=authoryear,natbib=true]{biblatex}
I get e.g.
Jang, Sung-Wuk et al. (2010). “N-acetylserotonin activates TrkB receptor in 
a circadian rhythm.” eng. In: P Natl Acad Sci USA 107, pp. 3876–3881.
while I would like to have 
Jang, S.-W. et al. (2010). N-acetylserotonin activates TrkB receptor in a 
circadian rhythm. In: P Natl Acad Sci USA 107, pp. 3876–3881.

and
Jewett, M. E., D. W. Rimmer, et al. (1997). “Human circadian pacemaker is 
sensitive to light throughout subjective day without evidence of 
transients”. In: Am J Physiol 273, R1800–R1809.
while I want 
Jewett, M. E. et al. (1997). Human circadian pacemaker is sensitive to
light throughout subjective day without evidence of transients. In: Am J 
Physiol 273, R1800–R1809.

Where would I find the option in the handbook to get rid of eng. (first 
citation) and the number of authors cited. Searching for eng. was not 
successfull

Wolfgang

Re: Biber documentation

2012-11-28 Thread stefano franchi

The biblatex manual should be installed on your system by your Tex
distribution. The command
>texdoc biblatex
should bring it up. TexLive installs it in

/usr/local/texlive/2012/texmf-dist/doc/latex/biblatex/biblatex.pdf

If you use Debian's TEx, however, it may be in a different place---Debian's
Tex used to have a different directory structure than TexLive.

Similarly, the biber manual is called biber.pdf and texlive puts it in

/usr/local/texlive/2012/texmf-dist/doc/bibtex/biber/biber.pdf

A search for either file on your system (with, e.g.  >locate
biber|biblatex.pdf) should tell you where they are.

You can also google either file and you'll get to them quickly. Here is
biber.pdf on sourceforge:

http://iweb.dl.sourceforge.net/project/biblatex-biber/biblatex-biber/1.4/documentation/biber.pdf

and here is biblatex.pdf on Ctan:

ftp://www.ctan.org/ctan/macros/latex/exptl/biblatex/doc/biblatex.pdf


Cheers,

Stefano

-- 
__
Stefano Franchi
Associate Research Professor
Department of Hispanic StudiesPh:   +1 (979) 845-2125
Texas A&M University  Fax:  +1 (979) 845-6421
College Station, Texas, USA

stef...@tamu.edu
http://stefano.cleinias.org

Re: Getting lyx to recognise biber

2012-03-22 Thread stefano franchi

On Thu, Mar 22, 2012 at 6:41 AM, Roey Angel  wrote:
> To have it recognise it I needed to:
> 1. insert a note at the end of the document and within it insert the Bibtex
> bibliography.
> 2. change the name of the .bib data base to not include any dots (my former
> filename was something like data.base.name.bib and that doesn't work).

I believe that's the standard way of using biblatex in LyX (besides
pushing citations from external programs).
No wonder the biblatex module was not working for you.

I am glad to hear your problem is solved.


Cheers,

Stefano




-- 
__
Stefano Franchi
Associate Research Professor
Department of Hispanic Studies            Ph:   +1 (979) 845-2125
Texas A&M University                          Fax:  +1 (979) 845-6421
College Station, Texas, USA

stef...@tamu.edu
http://stefano.cleinias.org

Re: Getting lyx to recognise biber

2012-03-22 Thread Roey Angel

Works great.
Thanks!

Re: Getting lyx to recognise biber

2012-03-22 Thread Jürgen Spitzmüller

Roey Angel wrote:
> Now my only problem is that I'd like to change the global settings to 
> format all citations as (author year) rather than have to click on 
> each citation to change it.
> 
> Is the any way to do this?

Try

\renewrobustcmd*{\citet}{%
  \@ifstar
{\AtNextCite{\defcounter{maxnames}{999}}%
 \parencite}
{\parencite}}

in preamble.

HTH
Jürgen

Re: Getting lyx to recognise biber

2012-03-22 Thread Roey Angel

Brilliant tip Stefano! Problem is *nearly* solved.
It turns out that using zotero and lyz citations get pushed using \citet
command, which makes citations look like 'author (year)'.
I couldn't change that using the dialogue box because lyx wouldn't recognise
my .bib database.
To have it recognise it I needed to:
1. insert a note at the end of the document and within it insert the Bibtex
bibliography.
2. change the name of the .bib data base to not include any dots (my former
filename was something like data.base.name.bib and that doesn't work).

Now my only problem is that I'd like to change the global settings to 
format all citations as (author year) rather than have to click on 
each citation to change it.

Is the any way to do this?

Thanks again,
Roey

Re: Getting lyx to recognise biber

2012-03-21 Thread stefano franchi

On Wed, Mar 21, 2012 at 5:52 PM, Roey Angel  wrote:
> Hi Stefano,
> sure I'm using the biblatex module; that's the only way to get it working in 
> lyx.
> I also use the natbib=true options and still get that wrong output.
> When I hover over a citation in the text it says "no bibliography defined" and
> when click on it I get the citation dialogue box but I can't change the 
> citation
> style under formatting.
>
> I'm parsing citations from zotero through lyz plug-in and I wonder if that has
> something to do with it.
>
> Roey

If I understand your problem correctly, you want a a citation to appear as:

this is some that cites a book (Lastname, 1990)

which, in Latex with biblatex using the natbib option and a reference
with Lastname1990 as key would be:

this is some text that cites a book \citep{Lastname1990}

Have you tried checking the Latex source in LyX (View>>View Source),
to see whether you get the correct Latex command?

If that is the case, then I would look at the output of the latex
compilation (Document>>Latex log) for possible biblatex warnings

If all else fails, could you make a prepare a minimal example with the
wrong behavior (one paragraph, one citation) and post it?

Cheers,

Stefano


-- 
__
Stefano Franchi
Associate Research Professor
Department of Hispanic Studies            Ph:   +1 (979) 845-2125
Texas A&M University                          Fax:  +1 (979) 845-6421
College Station, Texas, USA

stef...@tamu.edu
http://stefano.cleinias.org

Re: Getting lyx to recognise biber

2012-03-21 Thread Roey Angel

Hi Stefano,
sure I'm using the biblatex module; that's the only way to get it working in 
lyx.
I also use the natbib=true options and still get that wrong output.
When I hover over a citation in the text it says "no bibliography defined" and
when click on it I get the citation dialogue box but I can't change the citation
style under formatting. 

I'm parsing citations from zotero through lyz plug-in and I wonder if that has
something to do with it.

Roey

Re: Getting lyx to recognise biber

2012-03-21 Thread stefano franchi

Roey,

have you tried using the biblatex module for LyX? That module allows
you to use different natbib-like biblatex commands to change the
format of your citation.
I normally use biblatex's authoryear style (with the natbib option)
and change the appearance of the citation depending on its context by
right-clicking on the reference.

Cheers,

Stefano

On Wed, Mar 21, 2012 at 2:35 PM, Roey Angel  wrote:
> Vielen Dank Jürgen! That totally did the trick.
> lyx now processes everything correctly with biber.
> Still my problem is the output.
> no matter what style I choose, the citation in text always includes the names
> outside brackets. So using style=authortitle I get
> ...make up as much as 44% of the land surface Verstraete and Schwartz(1991)
> and using style=numeric I get:
> ...make up as much as 44% of the land surface Verstraete and Schwartz[1]
>
>
> instead of
> ...make up as much as 44% of the land surface (Verstraete and Schwartz 1991)
> or
> ...make up as much as 44% of the land surface [1]
>
> Any ideas how to solve that
>
> Thanks again,
> Roey
>



-- 
__
Stefano Franchi
Associate Research Professor
Department of Hispanic Studies            Ph:   +1 (979) 845-2125
Texas A&M University                          Fax:  +1 (979) 845-6421
College Station, Texas, USA

stef...@tamu.edu
http://stefano.cleinias.org

Re: Getting lyx to recognise biber

2012-03-21 Thread Roey Angel

Vielen Dank Jürgen! That totally did the trick.
lyx now processes everything correctly with biber.
Still my problem is the output.
no matter what style I choose, the citation in text always includes the names
outside brackets. So using style=authortitle I get
...make up as much as 44% of the land surface Verstraete and Schwartz(1991)
and using style=numeric I get:
...make up as much as 44% of the land surface Verstraete and Schwartz[1]


instead of
...make up as much as 44% of the land surface (Verstraete and Schwartz 1991)
or
...make up as much as 44% of the land surface [1]

Any ideas how to solve that 

Thanks again,
Roey

Re: Getting lyx to recognise biber

2012-03-21 Thread Jürgen Spitzmüller

2012/3/21 Roey Angel :
> I managed to get the lyx 2.0.3 working but I'm still getting that error
> Package keyval Error: hash undefined.

On the Web, I've read that people who were getting that error had an
outdated biblatex version installed. Please try to update biblatex to
the most recent version. Also note that biber versions are tighly
related to biblatex versions. The respective documentations (biber and
bilatex, resp.) tell you which version of each other they require.

HTH,
Jürgen

Re: Getting lyx to recognise biber

2012-03-21 Thread Roey Angel

Thanks for the tip, Scott.
I managed to get the lyx 2.0.3 working but I'm still getting that error
Package keyval Error: hash undefined.
Also, after I revert back to bibtex8 (by changing to backend=bibtex8 in the
preamble and changing to Bibliography generator bibtex8 in Document setting) lyx
won't process the bibliography. It doesnt give an error, it simply runs through
and then gives a document without ref. list with the refs. in bibtex code 
format.
To fix it I have to delete the \bibliography{} line in the preamble and then put
it back.

Any ideas why that it happening?

The other problem I have that my references under bibtex8 look wrong.
my preamble line is: 
\usepackage[style=authoryear,natbib=true,backend=bibtex8]{biblatex}

but the document output looks like this 
...make up as much as 44% of the land surface Verstraete and Schwartz(1991)

instead of
...make up as much as 44% of the land surface (Verstraete and Schwartz 1991)
as I would expect and as is shown in:
http://wiki.lyx.org/BibTeX/Biblatex#using-biber

Any suggestions will be more than welcome
Roey

RE: Getting lyx to recognise biber

2012-03-20 Thread Scott Kostyshak

From: lyx-users@lists.lyx.org [lyx-users@lists.lyx.org] on behalf of Roey Angel 
[angel.r...@gmail.com]
Sent: Tuesday, March 20, 2012 8:48 PM

>I'm using lyx 2.0.0 because that's what's available through the ubuntu 
>repository.
>I could build it from source but only if that's what's  causing the problem.

There is an Ubuntu PPA:
https://launchpad.net/~lyx-devel/+archive/release
This allows you to easily install 2.0.3 without having to build from source.

Scott

Re: Getting lyx to recognise biber

2012-03-20 Thread Roey Angel

Thanks for the help, Jürgen.
ok now that it's in path lyx recognises biber, but trying to process my
 document
with it gives an error:
Package keyval Error: hash undefined.

I'm using lyx 2.0.0 because that's what's available through the ubuntu
 repository.
I could build it from source but only if that's what's  causing the problem.

Roey

Re: Getting lyx to recognise biber

2012-03-20 Thread Jürgen Spitzmüller

Roey Angel wrote:
> I'm trying to get Lyx (2.0.0) to work with biber. 

You should update to LyX 2.0.3. Older versions have issues with recent biber 
releases.

> I downloaded the latest version of biber 0.9.8 and now what?!
> According to the LyX wiki, I should get a biber option on the pull-down
> menu   of my bibliography generation processor but all I have is: custom,
> bibtex and bibtex8.

You must execute Tools > Reconfigure LyX to make LyX aware of it.

> Where am I supposed to put biber so that lyx would recognise it?

You have to put it in a path (e.g. ~/bin). If "which biber" on the console 
returns a path, LyX should be able to find it.

HTH
Jürgen

Getting lyx to recognise biber

2012-03-20 Thread Roey Angel

Hi 
I'm trying to get Lyx (2.0.0) to work with biber. 
I downloaded the latest version of biber 0.9.8 and now what?!
According to the LyX wiki, I should get a biber option on the pull-down menu  
of my bibliography generation processor but all I have is: custom, bibtex and
bibtex8.
Where am I supposed to put biber so that lyx would recognise it?


Thanks in advance,
Roey

p.s
I'm running Kubuntu 11.10

Re: Biblatex-biber citation problem

2012-01-02 Thread Jürgen Spitzmüller

Peter Baumgartner wrote:
> I'm not sure if this is the right place for my question. In that case please
> either ignore my mail or give me a hint where to place the following
> problem:
> 
> I'm using biblatex with backend=bibtex8 and wanted to change to
> backend=biber. The change went fine but the output of the some of the
> in-text citation references is now different:
> 
> I'm using Natbib author/year style. In cases of electronic references (entry
> type "online") where no author and year are provided (but title, url and
> urldate) backend=bibtex8 produces the in-text citation (correctly) just
> with the title. But biber now adds the year of the urldate.

You should ask in the biber forum:
http://sourceforge.net/projects/biblatex-biber/forums/forum/824416

Jürgen

Biblatex-biber citation problem

2012-01-01 Thread Peter Baumgartner

Hello,

I'm not sure if this is the right place for my question. In that case please
either ignore my mail or give me a hint where to place the following
problem:

I'm using biblatex with backend=bibtex8 and wanted to change to
backend=biber. The change went fine but the output of the some of the
in-text citation references is now different:

I'm using Natbib author/year style. In cases of electronic references (entry
type "online") where no author and year are provided (but title, url and
urldate) backend=bibtex8 produces the in-text citation (correctly) just with
the title. But biber now adds the year of the urldate.

I think this is wrong because the date of the url - producing "visited on
.." - has nothing to do with the (unknown) time the page was written.

Any suggestion? - In the meanwhile I stick to bibtex8 ;-)

Peter

Re: Problems with biber

2011-09-19 Thread stefano franchi

On Thu, Jul 28, 2011 at 6:04 AM, G perillat  wrote:
> I think I have the same problem with lyx 2.0. Is the bug solved since Feb 4 ?
>
> Thank you


Are you still encountering the problem with biber? It should have been
fixed in Lyx 2.0.x and in 1.6.10

S.


-- 
__
Stefano Franchi
Associate Research Professor
Department of Hispanic Studies            Ph:   +1 (979) 845-2125
Texas A&M University                          Fax:  +1 (979) 845-6421
College Station, Texas, USA

Re: Biber

2011-08-26 Thread Kornel Benko

Am Freitag, 26. August 2011 schrieb Jürgen Spitzmüller:
> Kornel Benko wrote:
> > At least some desktopts are starting, without reading "~/.profile" first.
> > (If you start lyx through a shell-script, then of course you read
> > .profile)
> 
> I see. Then it just happens to work here (KDE 4.7, openSuse 11.4).
> 
> Frankly, I never heard of the .pam_environment file before, but you are the
> expert.
> 
> Jürgen

Kde starts as "sh /usr/bin/startkde" or such, that may work. Since I am working 
with "csh", I never created
.profile. My ".login" and ".cshrc" were ignored if started from desktop. It 
took a while to discover .pam_environment file.

See "6.6.6 FILES, User specific environment file" in

http://www.kernel.org/pub/linux/libs/pam/Linux-PAM-html/Linux-PAM_SAG.html

Kornel

signature.asc
Description: This is a digitally signed message part.

Re: Biber

Julio Rojas wrote:
> Small example working perfectly with biber. Even with the same
> preamble and configuration (a parent file and a lorem ipsum child
> file). The only change is a reduced bib file with some selected
> entries. Maybe some problem processing the bib file itself?

Maybe. Try to sort that out by checking which entries are the culprit. A thing 
that comes to mind is encoding. Which encoding does the bib file have? If it 
differs from the encoding of the document (as set via inputenc), you have to 
declare that via the bibencoding option, e.g.

\usepackage{...,bibencoding=latin9,backend=biber]{biblatex}

Again, please refer to the biblatex manual for details.

Jürgen

Re: Biber

2011-08-26 Thread Julio Rojas

Small example working perfectly with biber. Even with the same
preamble and configuration (a parent file and a lorem ipsum child
file). The only change is a reduced bib file with some selected
entries. Maybe some problem processing the bib file itself?

Regards.
-
Julio Rojas
jcredbe...@gmail.com

On Fri, Aug 26, 2011 at 5:49 PM, Jürgen Spitzmüller  wrote:
> Kornel Benko wrote:
>> At least some desktopts are starting, without reading "~/.profile" first.
>> (If you start lyx through a shell-script, then of course you read .profile)
>
> I see. Then it just happens to work here (KDE 4.7, openSuse 11.4).
>
> Frankly, I never heard of the .pam_environment file before, but you are the
> expert.
>
> Jürgen
>

Re: Biber

Kornel Benko wrote:
> At least some desktopts are starting, without reading "~/.profile" first.
> (If you start lyx through a shell-script, then of course you read .profile)

I see. Then it just happens to work here (KDE 4.7, openSuse 11.4).

Frankly, I never heard of the .pam_environment file before, but you are the 
expert.

Jürgen

Re: Biber

Julio Rojas wrote:
> RTFM! Well, I added the option, and biber is running:
> 
> [0] Config.pm:253> INFO - This is biber 0.9.4
> [0] Config.pm:256> INFO - Logfile is 'Tesis_Maestro.blg'
> [1] biber:112> INFO - === Fri Aug 26, 2011, 16:55:40
> [1] Biber.pm:304> INFO - Reading 'Tesis_Maestro.bcf'
> [66] Biber.pm:606> INFO - Found 140 citekeys in bib section 0
> [157] Biber.pm:2466> INFO - Processing bib section 0
> [172] Biber.pm:2555> INFO - Looking for bibtex format file
> '/home/jcredberry/Dropbox/Sulan/BD_tesis.bib' for section 0
> [172] bibtex.pm:104> INFO - Found bibtex data file
> '/home/jcredberry/Dropbox/Sulan/BD_tesis.bib'
> 
> Still, no references are produced:
> 
> Package biblatex Warning: No reference sections found on input line 189.
> LaTeX Warning: Empty bibliography on input line 189.
> LaTeX Warning: Empty bibliography on input line 190.
> 
> Thx for all your effort!

Can you set up a minimal example file (including the bib file)? Something else 
in your setup must be wrong.

Jürgen

Re: Biber

2011-08-26 Thread Julio Rojas

RTFM! Well, I added the option, and biber is running:

[0] Config.pm:253> INFO - This is biber 0.9.4
[0] Config.pm:256> INFO - Logfile is 'Tesis_Maestro.blg'
[1] biber:112> INFO - === Fri Aug 26, 2011, 16:55:40
[1] Biber.pm:304> INFO - Reading 'Tesis_Maestro.bcf'
[66] Biber.pm:606> INFO - Found 140 citekeys in bib section 0
[157] Biber.pm:2466> INFO - Processing bib section 0
[172] Biber.pm:2555> INFO - Looking for bibtex format file
'/home/jcredberry/Dropbox/Sulan/BD_tesis.bib' for section 0
[172] bibtex.pm:104> INFO - Found bibtex data file
'/home/jcredberry/Dropbox/Sulan/BD_tesis.bib'

Still, no references are produced:

Package biblatex Warning: No reference sections found on input line 189.
LaTeX Warning: Empty bibliography on input line 189.
LaTeX Warning: Empty bibliography on input line 190.

Thx for all your effort!
-
Julio Rojas
jcredbe...@gmail.com



On Fri, Aug 26, 2011 at 4:38 PM, Jürgen Spitzmüller  wrote:
> Julio Rojas wrote:
>> First, I just selected biber from the pulldown.
>
> OK.
>
>> Second, I have tried both, including and not including "backend=biber" in
>> Document > Settings > Document Class > Custom
>> and as well as in
>> Document > Settings > Bibliography > Options
>
> Both is wrong. You have to pass the option to biblatex directly with your
> package call, i.e.
>
> \usepackage[...,backend=biber]{biblatex}
>
> Please read the biblatex manual for details on how to load the package.
>
> HTH,
> Jürgen
>
>> -
>> Julio Rojas
>> jcredbe...@gmail.com
>>
>> On Fri, Aug 26, 2011 at 4:01 PM, Jürgen Spitzmüller  wrote:
>> > Julio Rojas wrote:
>> >> /usr/local/texlive/2011/texmf-dist/tex/latex/biblatex/biblatex.sty
>> >> Package: biblatex 2011/07/29 v1.6 programmable bibliographies
>> >>
>> >> It seems ok.
>> >
>> > Yes, it seems OK.
>> >
>> > Now let's clarify if the basic settings are correct:
>> >
>> > First, did you really pass the option backend=biber to biblatex?
>> >
>> > Then, please tell us how you set up biber. Did you specify any options
>> > or just select biber from the dropdown list?
>> >
>> > Also, posting the whole LaTeX log file might shed some light on things.
>> >
>> > Jürgen
>
>

Re: Biber

2011-08-26 Thread Kornel Benko

Am Freitag, 26. August 2011 schrieb Jürgen Spitzmüller:
> Kornel Benko wrote:
> > > I suppose you have to adjust your path settings. In your local profile
> > > file (~/.profile most probably), add the following (if the file does
> > > not exist
> > 
> > > yet, create it):
> > This is not  sufficient. With this, the path is set only for programs
> > called from the command line. To make it available to the desktop you
> > should consider to edit "~/.pam_environment" (Create it, if not already
> > there)
> > 
> > The syntax is simple a list of shell-variables you want to set. Like this:
> > PATH
> > 
> > OVERRIDE=/usr/local/bin:/usr/local/texlive/2011/bin/x86_64-linux:/usr/bin
> > :/ usr/sbin:/sbin:/bin:/usr/bin/X11:.
> 
> Sure? It works as I expect it here, also when calling LyX not from the cl.
> 
> Jürgen

At least some desktopts are starting, without reading "~/.profile" first. (If 
you start lyx through a shell-script, then of course
you read .profile)

Kornel


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Re: Biber

Julio Rojas wrote:
> First, I just selected biber from the pulldown.

OK.

> Second, I have tried both, including and not including "backend=biber" in
> Document > Settings > Document Class > Custom
> and as well as in
> Document > Settings > Bibliography > Options

Both is wrong. You have to pass the option to biblatex directly with your 
package call, i.e.

\usepackage[...,backend=biber]{biblatex}

Please read the biblatex manual for details on how to load the package.

HTH,
Jürgen

> -
> Julio Rojas
> jcredbe...@gmail.com
> 
> On Fri, Aug 26, 2011 at 4:01 PM, Jürgen Spitzmüller  wrote:
> > Julio Rojas wrote:
> >> /usr/local/texlive/2011/texmf-dist/tex/latex/biblatex/biblatex.sty
> >> Package: biblatex 2011/07/29 v1.6 programmable bibliographies
> >> 
> >> It seems ok.
> > 
> > Yes, it seems OK.
> > 
> > Now let's clarify if the basic settings are correct:
> > 
> > First, did you really pass the option backend=biber to biblatex?
> > 
> > Then, please tell us how you set up biber. Did you specify any options
> > or just select biber from the dropdown list?
> > 
> > Also, posting the whole LaTeX log file might shed some light on things.
> > 
> > Jürgen

Re: Biber

Kornel Benko wrote:
> > I suppose you have to adjust your path settings. In your local profile
> > file (~/.profile most probably), add the following (if the file does
> > not exist
> > yet, create it):
> This is not  sufficient. With this, the path is set only for programs called
> from the command line. To make it available to the desktop you should
> consider to edit "~/.pam_environment" (Create it, if not already there)
> 
> The syntax is simple a list of shell-variables you want to set. Like this:
> PATH
> OVERRIDE=/usr/local/bin:/usr/local/texlive/2011/bin/x86_64-linux:/usr/bin:/
> usr/sbin:/sbin:/bin:/usr/bin/X11:.

Sure? It works as I expect it here, also when calling LyX not from the cl.

Jürgen

Re: Biber

2011-08-26 Thread Kornel Benko

Am Freitag, 26. August 2011 schrieb Jürgen Spitzmüller:
> Julio Rojas wrote:
> > I removed the version of biber I had previously installed.
> > 
> > jcredberry@2e14-200305:/usr/local/texlive/2011/texmf/tex/latex$ biber -v
> > biber version: 0.9.4
> > 
> > But Lyx is still looking for textlive 2009 (which is also installed).
> > Do you know how can I make it to look at texlive 2011 (yes, I
> > reconfigured several times after installation)?
> 
> I suppose you have to adjust your path settings. In your local profile file
> (~/.profile most probably), add the following (if the file does not exist
> yet, create it):

This is not  sufficient. With this, the path is set only for programs called 
from the command line.
To make it available to the desktop you should consider to edit 
"~/.pam_environment" (Create it, if not already there)

The syntax is simple a list of shell-variables you want to set. Like this:
PATH 
OVERRIDE=/usr/local/bin:/usr/local/texlive/2011/bin/x86_64-linux:/usr/bin:/usr/sbin:/sbin:/bin:/usr/bin/X11:.

> #
> # Set some environment variables for TeX/LaTeX
> #
> export TEXMFCNF=/usr/local/texlive/2011/texmf/web2c:$TEXMFCNF
> export PATH=/usr/local/texlive/2011/bin/i386-linux:$PATH
> 
> After relogin, LyX should find the right binaries. See also sec. 3.4.1 of
> the texlive manual:
> http://www.tug.org/texlive/doc/texlive-en/texlive-en.html
> 
> I have created a symlink here from /usr/local/texlive/current to
> /usr/local/texlive/2011 and set all pathes to current instead of 2011. This
> way, I need only change the symlink after a distribution upgrade.

Good idea

> HTH,
> Jürgen

Kornel


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Re: Biber