Re: [Mzmine-devel] Bug fix related to PlantCYC identification-REG

2014-07-12 Thread Tomas Pluskal
Hi Dhananjay, I know that there are several problems in the online identification modules, but at the moment there is nobody with enough time to fix them. I hope to get back to MZmine development around September. If you want the problems fixed soon, you can hire a software developer to do it

[Mzmine-devel] Bug fix related to PlantCYC identification-REG

2014-07-11 Thread Dhananjay Dhokane
Dear, Greetings for the day!! I Dhananjay Dhokane is pursuing my doctoral studies at Department of Plant sciences, McGill university, Canada. First of all I would like to appreciate the development and regular updating of MzMine software. In our lab, we are extensively using this software for

Re: [Mzmine-devel] Bug report: CSV export of identified compounds / graphics problem

2010-11-17 Thread Tomas Pluskal
Hi Mark, > The CSV file export appears to have a problem when you include compound > identification columns. In several cases the chemical name has overwritten > the first column of the results. This happens in both Excel 2007 and SIMCA-P > so its not an Excel issue. Please see PNG’s enclosed.

Re: [Mzmine-devel] Bug report: No 3D plots

2010-11-02 Thread Tomas Pluskal
Hi Mark, > Mzmine fails to load if I use the 64 bit option unfortunately > It seems the -d64 option is not necessary on Windows. > I checked the Java 3d site and there are two drivers: > > > J3d-1_5_2-windows-amd64.zip   and > > J3d-1_5_2-windows-i586.zip > > Since I have an Intel Xeon processo

Re: [Mzmine-devel] Bug report: No 3D plots

2010-11-01 Thread Pudney Chris (ext) GBJH
G'day, > However when I load mass spectral data and click on “Visualisation / 3D > plot nothing happens. The 2D and TIC plots all work fine. You can also explicitly check whether Java3D has been installed by visiting your JRE's installation home directory, e.g. C:\Program Files\Java\jre6 and th

Re: [Mzmine-devel] Bug report: No 3D plots

2010-11-01 Thread Tomas Pluskal
Hi Mark, Somehow your Java runtime and Java3D library are not linked properly. Did you install 64-bit version of Java as well as 64-bit version of Java3D? Can you run these 2 commands on the windows command line and let me know the output? 1) java -version 2) java -d64 -version Also, you can

[Mzmine-devel] Bug report: No 3D plots

2010-11-01 Thread mark.earll
Hi Tomas, I have installed mzmine 2.1 on windows 7 64 bit with Java 6 and Java 3D installed. I have verified that Java 3D works by visiting the java 3d test page at .downloadjava3d.com/java3dtest.php and indeed I do see a 3D spinning image. (The hardware is an Intel Xeon 8 core processor wi

Re: [Mzmine-devel] bug

2010-10-18 Thread Tomas Pluskal
Hi Hannes, Please go to menu Project / Set number formats and change the formatting of retention time from "m:ss" to "h:mm:ss". Since this issue has been already reported several times, I will change the formatting to automatically include hours if the time is > 60 min. The change will be include

[Mzmine-devel] bug

2010-10-18 Thread Hannes Drexler
Hi everybody, downloaded mzmine last week and played around a bit with the program. Looks interesting to me and if you indeed will provide Mascot support, I might be using the program quite frequently. However, there is one bug, which is annoying. Whenever I load a Thermo raw file and try to vi