Re: [R-pkg-devel] Package bioOED has been removed from CRAN just for personal reasons

2023-11-02 Thread Spencer Graves
eemed less supportive or even insulting, I'm very glad the person took the time to comment and didn't decide not to reply for fear of offending me. I'm more productive and a better human for all the help I've gotten from this and other R-related lists. fortunes::fortune('Spencer Graves')

Re: [R-pkg-devel] Too many cores used in examples (not caused by data.table)

2023-10-24 Thread Spencer Graves
ot;a while" to run }) Have you tried writing directly to Jennifer Bryan ? She and Hadley might be able to get help from the CRAN maintainers in getting help with this particular problem AND getting more documentation on this in their book ;-) hope this helps. spen

Re: [Rd] Recent changes to as.complex(NA_real_)

2023-09-22 Thread Spencer Graves
Perhaps I shouldn't comment without having read the entire thread, but I will: I can envision situations where I might want, e.g., 2 from complex(r=2, i=NA_real_). Spencer Graves On 9/22/23 3:43 PM, Duncan Murdoch wrote: Since the result of is.na(x) is the same on each

Re: [R-pkg-devel] URL syntax causes R CMD build failure - a fix

2023-09-02 Thread Spencer Graves
I've encountered similar issues. However, it has been long enough ago that I don't remember enough details to say more without trying to update my CRAN packages to see what messages I get and maybe researching my notes from previous problems of this nature. Spencer Graves On 9/2/23 4:23 PM

[R-pkg-devel] gfortran: command not found

2023-07-05 Thread Spencer Graves
: gfortran: No such file or directory make: *** [approx.o] Error 1 ERROR: compilation failed for package ‘KFAS' My web search suggests several different ways to fix this problem, but I don't know which to try. Suggestions? Thanks, Spencer Graves p.s. I have both "

Re: [R-pkg-devel] GitHub Action not triggered by a commit to a fork

2023-07-05 Thread Spencer Graves
reen button? Got it. I pushed another change, and that triggered GitHub Action. Thanks again, Spencer Graves Best El mié, 5 jul 2023 a las 23:45, Spencer Graves (<mailto:spencer.gra...@effectivedefense.org>>) escribió: Hello:           Can someone h

[R-pkg-devel] GitHub Action not triggered by a commit to a fork

2023-07-05 Thread Spencer Graves
Hello: Can someone help me understand why a commit to "https://github.com/sbgraves237/KFAS; does not trigger the GitHub Actions specified in ".github/workflows/check-standard.yaml"? Thanks, Spencer Graves p.s. This is a branch of helske/KFAS:master.

Re: [R-pkg-devel] Change package name

2023-06-21 Thread Spencer Graves
cement. Then I added something like ".onAttach" to "RSiteSearch" and kept it on CRAN for a couple of years after introducing "sos". That allowed people to use the old package for a couple of years without forcing them to switch immediately.

[R-pkg-devel] masked from 'package:utils':,, ?-2

2023-05-23 Thread Spencer Graves
CRAN would probably accept it. However, I felt a need to ask about this before I submitted the package to CRAN without asking this group for suggestions. What do you think? Thanks, Spencer Graves [1] https://cran.r-project.org/web/checks

[R-pkg-devel] masked from 'package:utils':,, ?

2023-05-23 Thread Spencer Graves
CRAN would probably accept it. However, I felt a need to ask about this before I submitted the package to CRAN without asking this group for suggestions. What do you think? Thanks, Spencer Graves __ R-package-devel@r

Re: [R-pkg-devel] help fixing CRAN package sos-now fails on GitHub

2023-05-23 Thread Spencer Graves
, Vincent and Uwe, who contributed to this thread and the resolution of this problem. Spencer Graves Duncan Murdoch __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel

Re: [R-pkg-devel] help fixing CRAN package sos-now fails on GitHub

2023-05-22 Thread Spencer Graves
Thanks Spencer Graves On 5/16/23 7:41 AM, Uwe Ligges wrote: On 16.05.2023 14:02, Spencer Graves wrote: On 5/16/23 6:06 AM, Uwe Ligges wrote: On 16.05.2023 01:46, Spencer Graves wrote: Hello, All:    The sos package is failing some CRAN checks, complaining:[1] LaTe

Re: [R-pkg-devel] help fixing CRAN package sos

2023-05-22 Thread Spencer Graves
vignette available on CRAN.[1] The text of sos.Rnw is available on GitHub.[2] I am not eager to change the code in the package, because it could break something else that's currently working. Suggestions? Thanks, Spencer Graves [1] https://cran.r-project.

Re: [R-pkg-devel] help fixing CRAN package sos

2023-05-16 Thread Spencer Graves
On 5/16/23 6:06 AM, Uwe Ligges wrote: On 16.05.2023 01:46, Spencer Graves wrote: Hello, All:    The sos package is failing some CRAN checks, complaining:[1] LaTeX errors: ! Missing $ inserted. $ l.303 {\tt pspline_     checker} in the I can only

[R-pkg-devel] help fixing CRAN package sos

2023-05-15 Thread Spencer Graves
: Sun, 14 May 2023 14:46:06 +0100 From: Prof Brian Ripley Reply-To: CRAN To: Spencer Graves CC: c...@r-project.org On 12/05/2023 13:03, Spencer Graves wrote: Hello, All: You have just spammed my personal email address, contrary to the CRAN policy and done so deliberately and/or recklessl

Re: [R-pkg-devel] Package submission rejected as it fails checks on Debian

2023-02-21 Thread Spencer Graves
ver, if CRAN is rejecting your package on GitHub Action, a question about that to this list might help make it available. If you have special Ubuntu configuration issues that are not provided in the standard GitHub Action configurations, asking here might help you with that. Hope

Re: [R-pkg-devel] Package submission rejected as it fails checks on Debian

2023-02-20 Thread Spencer Graves
catch the problem that CRAN is catching on Debian. However, having the package on GitHub also makes it easier for someone else to clone the package and test it it for you ;-) This community of R developers provides very valuable support for problems like this. Hope this h

[Rd] scan(..., skip=1e11): infinite loop; cannot interrupt

2023-02-10 Thread Spencer Graves
n R that allows me to read chunks of a large file like this? Thanks, Spencer Graves writeLines(as.character(1:11), 'tstNums.txt') (Tst2 <- scan('tstNums.txt', n=12, skip=5)) # works: 6 7 8 9 10 11 (Tst13 <- scan('tstNums.txt', n=12, skip=13)) # works: numeric

Re: [R-pkg-devel] corrupted NAMESPACE file

2023-01-20 Thread Spencer Graves
On 1/20/23 7:32 PM, Duncan Murdoch wrote: On 20/01/2023 8:16 p.m., Spencer Graves wrote: Hello, All:   My attempts to fix this problem exposed what seems to be a completely unrelated problem:  All five GitHub Actions end now with: Error: package or namespace load failed for ‘fda

Re: [R-pkg-devel] corrupted NAMESPACE file

2023-01-20 Thread Spencer Graves
1: export(AmpPhasDecomp, rawToChar(readBin(' https://raw.githubusercontent.com/JamesRamsay5/fda/master/NAMESPACE', what="raw", n=20)) [1] "\357\273\277export(AmpPhasDec" -Bill On Fri, Jan 20, 2023 at 9:16 AM Spencer Graves < spencer.gra...@effectivedefense.org> wrote: Hi, Ivan

Re: [R-pkg-devel] corrupted NAMESPACE file

2023-01-20 Thread Spencer Graves
Hi, Ivan and Uwe: Thanks for your suggestions, but I've so far been unable to get them to work. see below. On 1/20/23 9:22 AM, Uwe Ligges wrote: On 20.01.2023 15:53, Ivan Krylov wrote: В Fri, 20 Jan 2023 08:41:25 -0600 Spencer Graves пишет: ** byte-compile and prepare package

[R-pkg-devel] corrupted NAMESPACE file

2023-01-20 Thread Spencer Graves
: 1:1: unexpected input That's the same error I've gotten with "R CMD build fda" locally. Suggestions? Thanks, Spencer Graves __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel

Re: [Rd] Combinations and Permutations

2023-01-13 Thread Spencer Graves
sly, a particular attention should be brought to the size of x (referred here as n) as the column number in the returned matrix growths as n!.. E.g. 8!=40320. So growths the cpu time too. What about "combinat::permn"? Spencer Graves Hoping it h

Re: [R-pkg-devel] Mysterious "invalid z limit"

2023-01-08 Thread Spencer Graves
part of my ignorance. Spencer Best,   Kevin On Sun, Jan 8, 2023, 11:30 AM Spencer Graves <mailto:spencer.gra...@effectivedefense.org>> wrote:           If you use GitHub, I highly recommend using "GitHub Action" as described by Wickham and Bryan, R

Re: [R-pkg-devel] Mysterious "invalid z limit"

2023-01-08 Thread Spencer Graves
flows in: https://github.com/r-lib/actions/blob/v2-branch/examples/check-standard.yaml I also needed LaTeX support, for which Gábor suggested the following: https://github.com/r-lib/actions/tree/v2/setup-tinytex#ctan-packages Spencer Graves On 1/8/23 9:11 AM, Kev

Re: [R-pkg-devel] Current recommendations re. GitHub Action?

2023-01-02 Thread Spencer Graves
and macOS. However, Ubuntu failed with devel and oldrel1, complaining, "there is no package called ‘rcmdcheck’". See: https://github.com/sbgraves237/sos Suggestions? Thanks, Spencer Graves Hth, Dirk _

[R-pkg-devel] Current recommendations re. GitHub Action?

2023-01-02 Thread Spencer Graves
I would happily rtfm if I only knew which fmtr. Thanks, Spencer Graves __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel

Re: [R-pkg-devel] How to reduce examples in a package that takes more than 5 seconds to run?

2022-12-15 Thread Spencer Graves
s://github.com/sbgraves237/sos/blob/master/man/findFn.Rd Hope this helps. Spencer Graves __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel _

Re: [Rd] unlist preserve common class?

2022-12-09 Thread Spencer Graves
2-12-09" $d1 [1] "2022-12-11" (maximin <- do.call('max', tt4)) [1] "2022-12-11" Conclusion: It would help to document Duncan's solution using "do.call" and avoiding "unlist" and "sapply". I brought it to the attention of th

Re: [Rd] unlist preserve common class?

2022-12-08 Thread Spencer Graves
ned example. That was motivated by a more complicated example, which took me a couple of hours to understand why it wasn't working as I expected ;-) Thanks for your reply. Spencer Graves we could special case (the default method of) unlist so that for x /not a list/, we're gu

[Rd] unlist preserve common class?

2022-12-08 Thread Spencer Graves
they think that the core R language might benefit from modifying the language so "str(unlist(list(Sys.Date(" was of class 'Date', at least as an option. Comments? Thanks, Spencer Graves > sessionInfo() R version 4.2.2 (2022-10-31) Platform: x86_64-

Re: [R-pkg-devel] Error uploading file on CRAN

2022-11-27 Thread Spencer Graves
, see: https://github.com/sbgraves237/Ecdat/blob/master/Ecdat_release_to_CRAN.R Hope this helps. Spencer Graves I look forward to hearing from you. Thanking you and sincerely Havisha Jahajeeah On Mon, Nov 7, 2022 at 12:30 PM Jahajeeah, Havisha wrote: Dear CRAN team,

Re: [Rd] as.Date without "origin"

2022-11-02 Thread Spencer Graves
having the default origin as a default would make very much sense to me here. Of course, for that particular example, it would also help me if ifelse() would properly handle Date vectors. Best Johannes Gesendet: Mittwoch, 02. November 2022 um 14:38 Uhr Von: "Dan Dalthorp via R-devel"

Re: [Rd] as.Date without "origin"

2022-11-02 Thread Spencer Graves
ore support changing the documentation to match the new behavior. Spencer Graves On 11/2/22 7:30 AM, Dan Dalthorp via R-devel wrote: The new (2022-10-11 r83083 ucrt) as.Date function returns a date rather than an error when called without "origin" specified. # pr

Re: [R-pkg-devel] Problems with news in ‘NEWS’

2022-10-13 Thread Spencer Graves
On 10/13/22 4:34 AM, Ivan Krylov wrote: В Wed, 12 Oct 2022 20:16:20 -0500 Spencer Graves пишет: I copied NEWS to NEWS.md and tried to format it as described in: https://r-pkgs.org/other-markdown.html#news Sadly, I still get the same error. It seems to be ignoring my NEWS.md

[R-pkg-devel] Problems with news in ‘NEWS’

2022-10-12 Thread Spencer Graves
I haven't fixed NEWS. What do you suggest? Thanks, Spencer Graves Forwarded Message Subject:Ecdat 0.4-2: NOTE Date: Thu, 13 Oct 2022 00:55:10 + From: R-hub builder To: spencer.gra...@effectivedefense.org Ecdat 0.4-2: NOTE

Re: [R-pkg-devel] Misspelled words in descrition and tar.gz inside folder

2022-08-10 Thread Spencer Graves
ot;inst" folder. Below please find notes I've prepared for myself on the various tests I've gotten from their book, etc. The section numbers refer to an earlier version of this book. Ignore or use with caution. Hope this helps. Spencer Graves # File > &quo

[R-pkg-devel] Thanks -- success after 4 package submissions in 3 days

2022-07-23 Thread Spencer Graves
that are more easily fixed. Spencer Graves On 7/20/22 11:50 AM, Uwe Ligges wrote: Or simply read ?news which explains how the three formats (plain text NEWS, NEWS.Rd and NEWS.md) should look like. Best, Uwe Ligges On 20.07.2022 03:27, Max Turgeon wrote: Hi Spencer, This NOTE

Re: [R-pkg-devel] Warning... unable to translate 'Ekstrm' to a wide string; Error... input string 1 is invalid

2022-07-19 Thread Spencer Graves
Hi, Ivan et al.: On 7/19/22 1:03 PM, Ivan Krylov wrote: On Tue, 19 Jul 2022 12:32:20 -0500 Spencer Graves wrote: Can someone provide me with a link to the correct development version of help('iconv')? The current version includes the exact offending "\x" strings that I have. ht

Re: [R-pkg-devel] Rd cross-references ... NOTE, Undeclared packages ... in Rd xrefs

2022-06-13 Thread Spencer Graves
On 6/13/22 5:05 PM, Duncan Murdoch wrote: On 13/06/2022 5:11 p.m., Spencer Graves wrote: On 6/13/22 1:26 PM, Duncan Murdoch wrote: On 13/06/2022 12:12 p.m., Spencer Graves wrote: Hello, All:    How do I fix "Rd cross-references ... NOTE Undeclared packages ‘EnvStats’, ‘drc’,

[R-pkg-devel] NOTE: Escaped LaTeX specials: \$

2022-06-13 Thread Spencer Graves
could replace "\$1,000" with "1,000 US dollars", and "R\" could be replaced with "R and D". However, a dataset "Benefits" includes a column that is "a factor with levels (slack\_work,position\_abolished,seasonal\_job\_ended,other)".

Re: [R-pkg-devel] Rd cross-references ... NOTE, Undeclared packages ... in Rd xrefs

2022-06-13 Thread Spencer Graves
On 6/13/22 2:22 PM, Ivan Krylov wrote: On Mon, 13 Jun 2022 13:59:24 -0500 Spencer Graves wrote: I probably should have just used "Suggests" and not bothered this list with this issue. Why not use the \link{foo} form and let the HTML help system resolve the link a

Re: [R-pkg-devel] GitHub error

2022-04-20 Thread Spencer Graves
Hi, Andrew: Thanks. I think that was exactly what I needed: I was in particular unsure about "git push --force". Spencer Graves On 4/20/22 8:22 PM, Andrew Simmons wrote: Not really the place for this type of thing, but here's what I'd do: add .DS_Store to your .giti

Re: [R-pkg-devel] doi confusion and Data codoc mismatches--AND THE VALUE OF GITHUB

2022-01-04 Thread Spencer Graves
in R 4.2.0 or maybe some 4.1.x release.  Thanks Kurt! Duncan Murdoch Duncan Murdoch On 26/12/2021 5:55 a.m., Duncan Murdoch wrote: On 26/12/2021 12:07 a.m., Spencer Graves wrote: Hello, All:   The latest checks on "https://github.com/sbgraves237/Ecdat/runs/4634725654?check_suite_

[R-pkg-devel] doi confusion and Data codoc mismatches-confusing check

2021-12-26 Thread Spencer Graves
, whild clicking on "doi: 10.18128/D010.V8.0" takes me to that URL. This looks like a change to how *.Rd files are rendered that has appeared in the process on GitHub but not in my local computer. ??? Thanks, Spencer Graves > sessionInfo() R version

[R-pkg-devel] doi confusion and Data codoc mismatches

2021-12-25 Thread Spencer Graves
t were, e.g., \url{https://doi.org/10.18128/D010.V8.0} I would try replacing it with \doi{10.18128/D010.V8.0}. However, if I do that, I don't know what to do with the "text to display to click to link to the doi url". Thanks, Spencer Graves _

Re: [R-pkg-devel] [External] Re: What is a "retired"package?

2021-09-22 Thread Spencer Graves
On 9/22/21 2:38 AM, Martin Maechler wrote: Lenth, Russell V on Tue, 21 Sep 2021 18:43:07 + writes: > As I suspected, and a good point. But please note that the term "retired" causes angst, and it may be good to change that to "superceded" or something else. well, some of us

Re: [Rd] R-Forge http link redirection setup busted

2021-07-19 Thread Spencer Graves
roblems with changes not triggering checks and getting messages like, "there is no package called 'Matrix'". There was a discussion on r-package-de...@r-project.org in January and February of this year on how to do that. That thread could probably help anyone interested in doing thi

Re: [R-pkg-devel] Change package maintainer

2021-07-02 Thread Spencer Graves
I can suggest one example: multcompView: I created it during or before 2006 and passed it during or before 2011 to Luciano Selzer . I do not remember the exact process, and procedures could have changed since then. However, I think I remember communicating with the CRAN maintainers after

[R-pkg-devel] Warning in dir.create(vd2 <- "vign_test") : 'vign_test' already exists

2021-06-29 Thread Spencer Graves
at: https://github.com/sbgraves237/Ecfun This passed all 4 GitHub Actions, so maybe I should not worry about this. Comments? Thanks, Spencer Graves sessionInfo() R version 4.1.0 (2021-05-18) Platform: x86_64-apple-darwin17.0 (64-bit) Running under: ma

Re: [R-pkg-devel] How to communicate WARNINGS fixed from *last* CRAN version of a package

2021-06-22 Thread Spencer Graves
k() Hope this helps. Spencer Graves On 6/22/21 6:53 AM, Alberto Garre wrote: Thanks. I just "replied-to-all" again. Gmail then sends the email to cran-submissi...@r-project.org. Is this the correct address? El mar, 22 jun 2021 a las 12:38, Georgi Boshnakov (<

Re: [R-pkg-devel] Question about preventing CRAN package archival

2021-06-02 Thread Spencer Graves
The CRAN maintainers almost certainly have tried to contact the maintainer. You can ask if he plans to fix the bug. If not, if it's that easy to fix, you could offer to both the maintainers of both matrixcalc and CRAN to take over maintenance. Spencer On 6/2/21 2:41 PM, Roy

Re: [R-pkg-devel] \donttest{} and writing outputs to tempdir()

2021-06-02 Thread Spencer Graves
You surely should be able to have some examples that would run in less than 5 seconds. I almost never use "donttest". Instead I use conditional skips, and those only on examples that I believe are likely to run too long. In those cases, I believe the standard recommendation is:

Re: [R-pkg-devel] GitHub Action failed re-building 'sos.Rnw'

2021-05-25 Thread Spencer Graves
ry to understand it and fix it myself. However, I really don't understand the code, and you certainly did when you wrote it ;-) Thanks, Spencer Graves On 5/24/21 10:35 AM, Duncan Murdoch wrote: On 24/05/2021 10:17 a.m., Spencer Graves wrote: Hi, Duncan:   Thanks aga

Re: [R-pkg-devel] GitHub Action failed re-building 'sos.Rnw'

2021-05-24 Thread Spencer Graves
 if (requireNamespace("fda") && fda::CRAN()) I'd do number 1, or just assume everything is being run on CRAN. Duncan Murdoch On 23/05/2021 6:49 p.m., Spencer Graves wrote: Hi, Duncan et al.:   Thanks again.  I removed fda from "suggests" and added it to &quo

Re: [R-pkg-devel] GitHub Action failed re-building 'sos.Rnw'

2021-05-23 Thread Spencer Graves
I really appreciate the help. Spencer On 5/23/21 4:44 PM, Duncan Murdoch wrote: I don't see where the connection is, but it's almost certainly coming in through your unconditional use of "fda::CRAN()".  Since "fda" is not a hard requirement, this should be conditio

Re: [R-pkg-devel] GitHub Action failed re-building 'sos.Rnw'

2021-05-23 Thread Spencer Graves
r you, but I think the 2nd line _R_CHECK_FORCE_SUGGESTS_: false may be more important:  you use ks, it imports plot3D, plot3D imports misc3d, but it only suggests rgl and tkrplot:  so that would let ks load without XQuartz support. Duncan Murdoch On 23/05/2021 3:09 p.m., Spencer Graves

Re: [R-pkg-devel] GitHub Action failed re-building 'sos.Rnw'

2021-05-23 Thread Spencer Graves
or: File `tikz.sty' not found."       )     shell: Rscript {0} Duncan Murdoch On 23/05/2021 11:28 a.m., Spencer Graves wrote: Hi, Duncan et al.:   Thanks very much to Duncan for his suggestion.  I did added the line Duncan suggested in three slightly different places.

Re: [R-pkg-devel] GitHub Action failed re-building 'sos.Rnw'

2021-05-23 Thread Spencer Graves
ns, and I did some other searches without figuring out how to fix "`tikz.sty' not found." For more details, see: https://github.com/sbgraves237/sos Suggestions? Thanks, Spencer On 5/23/21 4:43 AM, Duncan Murdoch wrote: On 22/05/2021 10:05

[R-pkg-devel] GitHub Action failed re-building 'sos.Rnw'

2021-05-22 Thread Spencer Graves
vi cannot proceed without one. The error message under Windows seemed crudely similar but different: * Error: processing vignette 'sos.Rnw' failed with diagnostics: pdflatex is not available What do you suggest? Th

Re: [R-pkg-devel] autotesting on GitHub with Travis or ...?

2021-05-20 Thread Spencer Graves
t add" and "git commit" .github". * And when using "usethis::use_readme_rmd()", I initially missed the need to "knit" the file to produce the README.md. Spencer Graves On 5/13/21 7:04 PM, Ben Bolker wrote:   GitHub Actions   ?usethis::use_

[R-pkg-devel] autotesting on GitHub with Travis or ...?

2021-05-13 Thread Spencer Graves
t;Run usethis::use_travis()".[1] However, 'help("use_travis", package="usethis")' says it's deprecated, but I don't understand what is recommended as an alternative. What do you suggest? Thanks, Spencer Graves [1] h

Re: [Rd] URL checks

2021-01-08 Thread Spencer Graves
CMD check ;-) Spencer Graves On 2021-01-07 09:53, Hugo Gruson wrote: I encountered the same issue today with https://astrostatistics.psu.edu/. This is a trust chain issue, as explained here: https://whatsmychaincert.com/?astrostatistics.psu.edu. I've worked for a couple of years on a project t

Re: [R-pkg-devel] Used package not updated - needs java < V 11

2020-12-17 Thread Spencer Graves
en someone to agree to take it over who just hasn't finished fixing whatever deficiencies it has.  However, you might see how difficult it might be to do without "gdata" as well.    Spencer Graves    Is it permissible to copy the code from rename.vars (gdata) inside my

Re: [R-pkg-devel] Used package not updated - needs java < V 11

2020-12-15 Thread Spencer Graves
d a huge number of reverse dependencies. The CRAN maintainers may have gotten someone to agree to take it over who just hasn't finished fixing whatever deficiencies it has. However, you might see how difficult it might be to do without "gdata" as well. Spencer Graves On

Re: [R-pkg-devel] CRAN packages suggesting other packages but not using them conditionally

2020-12-12 Thread Spencer Graves
On 2020-12-12 19:50, Duncan Murdoch wrote: On 12/12/2020 6:01 p.m., Ben Bolker wrote: On 12/12/20 5:50 PM, Duncan Murdoch wrote: On 12/12/2020 4:08 p.m., Spencer Graves wrote: Hi, Ben et al.: On 2020-12-12 13:43, Ben Bolker wrote:      Apologies if I'm telling you something you

Re: [R-pkg-devel] CRAN packages suggesting other packages but not using them conditionally

2020-12-12 Thread Spencer Graves
n no longer easily test. Spencer On 12/12/20 2:19 PM, Spencer Graves wrote:    I have tests in my code to detect when something like that is not available.    I also have code in "\examples" to skip tests that would encounter that.    Hadley's &quo

Re: [R-pkg-devel] CRAN packages suggesting other packages but not using them conditionally

2020-12-12 Thread Spencer Graves
I have tests in my code to detect when something like that is not available. I also have code in "\examples" to skip tests that would encounter that. Hadley's "testthhat:skip_on_cran" is supposed to suppress tests like that on CRAN. I have so far failed to understand how to use

Re: [Rd] as.POSIXct.numeric change default of origin argument

2020-12-06 Thread Spencer Graves
The fda package already includes as.POSIXct1970, which also sets tz="GMT" by default. I made the equivalent thing for as.Date available as "Ecfun::as.Date1970". If the Core R team doesn't want to make the change for the existing functions, they might consider adding alternatives

[R-pkg-devel] devtools::release() does not release

2020-11-26 Thread Spencer Graves
ntire devtools::release() transcript, it appears below running under Big Sur on a Mac. Suggestions? Thanks, Spencer Graves & Jim Ramsay —— devtools::release() Have you checked for spelling errors (with `spell_check()`)? 1: Not yet 2: Nope 3: Absolu

Re: [Rd] one thing to check

2020-11-10 Thread Spencer Graves
Please excuse: I did NOT intend to send this to R-Devel at this time. I was suggesting to Jim Ramsay a question we MIGHT want to pose to R-Devel. (I've since decided we probably won't need to.) Spencer On 2020-11-10 07:58, Spencer Graves wrote: Hi, Jim:   Could you

Re: [Rd] one thing to check

2020-11-10 Thread Spencer Graves
Hi, Jim: Could you please look at svd2.Rd and see what it says? It may give an example, where it gave a better answer than svd -- i.e., a marginal case, where svd2 honestly gave a better answer than svd. If we find -- either in svd2.Rd or in one of the revdepchecks -- an example

Re: [Rd] vignettes present in 2 folders or won't work

2020-11-01 Thread Spencer Graves
n only about 5% of articles.[3] Spencer Graves [1] https://cran.r-project.org/web/packages/policies.html [2] https://en.wikiversity.org/wiki/Forecasting_nuclear_proliferation#Appendix._Companion_R_Markdown_vignettes [3] https://en.wikipedia.org/wiki/Reliability_of_Wikipedia#Articles_on_contentio

[R-pkg-devel] RMarkdown vignettes with Wikiversity?

2020-10-22 Thread Spencer Graves
ersity.org/wiki/User_talk:Dave_Braunschweig#RMarkdown_vignettes_with_Wikiversity? Thanks, Spencer Graves __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel

[R-pkg-devel] "--resave-data" doesn't work

2020-10-22 Thread Spencer Graves
;. This is AFTER I do "R CMD build Ecdat --resave-data". What do you suggest I do to get past this problem? Thanks, Spencer Graves p.s. My ".travis.yml" file ends with "r_build_args: --resave-data". I had trou

Re: [R-pkg-devel] CRAN pending status , left up in the air

2020-10-19 Thread Spencer Graves
tainer would be asked to specify at least one "Task View" for each package and be willing to discuss overlap, etc., with others. This might be a topic for the next useR conference. Comments? Best Wishes, Spencer Graves best Rafael H M Pereira On Mon, Oc

Re: [R-pkg-devel] How to remove rJava from Ecfun when it's not called directly or indirectly

2020-10-16 Thread Spencer Graves
On 2020-10-11 10:34, Enrico Schumann wrote: On Sat, 10 Oct 2020, Spencer Graves writes: Hello, All: "R CMD check Ecfun_0.2-4.tar.gz" fails under Windows 10 with "Error: package or namespace load failed for 'Ecfun': .onLoad failed in loadNamespa

[Rd] tools::package_dependencies problems

2020-10-16 Thread Spencer Graves
quot;Imports", "LinkingTo")' is that specifying nothing defaults to "Depends". In this case, it defaults to "Imports". Moreover, I don't see a way to trace "Suggests". ??? Thanks, Spencer Graves

[R-pkg-devel] How to remove rJava from Ecfun when it's not called directly or indirectly

2020-10-10 Thread Spencer Graves
om/sbgraves237/Ecfun I get nothing from "grep 'rJava'" in the DESCRIPTION and NAMESPACE files plus in the man and R subdirectories. I ran tools:package_dependencies recursively starting with Ecfun until I got all NULLs and could not find rJava anywhere. Th

Re: [R-pkg-devel] installed package size problem on Mac but not Linux nor Windows

2020-09-22 Thread Spencer Graves
e run them manually. Or maybe I shouldn't be trying to distribute vignettes like this. Thanks for the reply. Spencer On Tue, 22 Sep 2020 at 5:04 pm, Spencer Graves <mailto:spencer.gra...@effectivedefense.org>> wrote: Hello, All:           R CMD

[R-pkg-devel] installed package size problem on Mac but not Linux nor Windows

2020-09-22 Thread Spencer Graves
Hello, All: R CMD check of "https://github.com/sbgraves237/Ecfun; on Mac produces the following NOTE: * checking installed package size ... NOTE installed size is 5.9Mb sub-directories of 1Mb or more: doc 5.2Mb It doesn't do that with Travis CI[1] nor on a Windows 10

Re: [Rd] trivial typo in ?Matrix::sparse.model.matrix.Rd

2020-07-21 Thread Spencer Graves
On 2020-07-21 09:00, Martin Maechler wrote: "AS" == Abby Spurdle on Wed, 22 Jul 2020 00:28:12 +1200 writes: >> "No documentation for ‘sparse.model.matrix’ in >> specified packages and libraries", but it's there after >> "library(Ecfun)". I find that interesting, because

Re: [Rd] trivial typo in ?Matrix::sparse.model.matrix.Rd

2020-07-21 Thread Spencer Graves
fter "library(Ecfun)".  I find that interesting, because "Matrix" does not appear in the Ecfun DESCRIPTION file.  AND I don't see 'repr = ("C", "R", "T")' in the "sparse.model.matrix" help file I do see.    Thanks,

Re: [R-pkg-devel] "non-ASCII input" and "--data-compress" ignored

2020-07-17 Thread Spencer Graves
fixed the UTF-8 problem and Travis confirmed that it can't make "--resave-data" work, either ;-)  If a CRAN maintainer complains about the compression problem, I can report what I tried and see what they suggest.   Thanks again,   Spencer Graves On 2020-07-17 04:10, Iva

Re: [R-pkg-devel] Note: information on .o files is not available / Found '_exit', possibly from '_exit' (C)

2020-07-17 Thread Spencer Graves
  Can you run the checks only on the subdirectory containing the compiled code?  If yes, then you can run it only on half of that directory and identify it with a binary search.   Some years ago, I found a particularly difficult bug that way.  If I recall correctly, I made a copy of

[R-pkg-devel] "non-ASCII input" and "--data-compress" ignored

2020-07-17 Thread Spencer Graves
and got the same result.   Suggestions?   Thanks,   Spencer Graves sessionInfo() R version 4.0.2 (2020-06-22) Platform: x86_64-apple-darwin17.0 (64-bit) Running under: macOS Catalina 10.15.5 Matrix products: default BLAS: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRblas

Re: [R-pkg-devel] email misleading: checking CRAN incoming feasibility ... NOTE Maintainer

2020-06-08 Thread Spencer Graves
en't found anything better.  I've recently seen "testthat::skip_on_cran(...)", but I have yet to understand enough of how it works to actually use it.   Thanks,   Spencer Graves On 2020-06-08 09:43, stefano wrote: Hello Uwe, OK sorry for that. Best wishes. *Stefano *

Re: [R-pkg-devel] [R] a question of etiquette

2020-06-02 Thread Spencer Graves
On 2020-06-02 14:24, Avraham Adler wrote: > > > On Tue, Jun 2, 2020 at 5:04 PM Spencer Graves > <mailto:spencer.gra...@effectivedefense.org>> wrote: > > QUESTION:  How much money have people on this list received for what > > they've written?  I've receive

Re: [R-pkg-devel] [R] a question of etiquette

2020-06-02 Thread Spencer Graves
On 2020-06-02 10:14, Adelchi Azzalini wrote: In general, "check the license" is a very sensible indication. In the specific case, the Matlab code comes with no licence indication - nothing.   I'm not an attorney, but it's my understanding that "no license indication" is a legal

Re: [R-pkg-devel] [R] a question of etiquette

2020-06-02 Thread Spencer Graves
the world is invited to provide credible source(s).   Spencer Graves On 2020-06-02 10:12, Dirk Eddelbuettel wrote: On 2 June 2020 at 10:06, R. Mark Sharp wrote: | The GPL-2 and GPL-3 licenses are apparently sufficiently ambiguous in the legal community that some companies avoid them. Wittgenstei

Re: [R-pkg-devel] [BULK] Re: [Rd] "not a valid win32 application" with rtools40-x86_65.exe on Windows 10

2020-05-12 Thread Spencer Graves
rary/rJava/libs/i386/rJava.dll':    LoadLibrary failure: ^1 is not a valid win32 application   The same package on my Mac quits with a LaTeX error I have yet to figure out how to fix.   Suggestions?   Thanks,   Spencer Graves 00install.out: * installing *source* package '

Re: [Rd] "not a valid win32 application" with rtools40-x86_65.exe on Windows 10

2020-04-30 Thread Spencer Graves
Hi, Jeroen et al.: On 2020-04-30 03:15, Jeroen Ooms wrote: On Thu, Apr 30, 2020 at 6:38 AM Spencer Graves wrote: Hello, All: "00install.out" from "R CMD check Ecfun_0.2-4.tar.gz" includes: Error: package or namespace load failed for 'Ecfun': .onLoad fai

[Rd] "not a valid win32 application" with rtools40-x86_65.exe on Windows 10

2020-04-29 Thread Spencer Graves
oad shared object 'c:/Program Files/R/R-4.0.0/library/rJava/libs/i386/rJava.dll':   LoadLibrary failure: ^1 is not a valid win32 application   This was after installing R 4.0.0 and "rtools40-x86_64.exe" under Windows 10 Pro 64-bit.   Suggestions?   Thanks,   Spencer Gr

Re: [R-pkg-devel] More GitHub problems

2020-04-21 Thread Spencer Graves
Hi, Ivan et al: On 2020-04-21 02:15, Ivan Krylov wrote: On Mon, 20 Apr 2020 23:44:43 -0500 Spencer Graves wrote: Is there a way to restore the functionality of a local clone of a GitHub repository after the SSH key it used was replaced? Does `git remote -v` in the repo directory show https

[R-pkg-devel] More GitHub problems

2020-04-20 Thread Spencer Graves
    Thanks,       Spencer Graves __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel

[Rd] How to find detritis rejected by "R CMD check" on Debian?

2020-04-17 Thread Spencer Graves
ttps://win-builder.r-project.org/incoming_pretest/fda_5.1.3_20200416_225207/Debian/00check.log   Thanks,       Spencer Graves __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [R-pkg-devel] GitHub problems

2020-04-03 Thread Spencer Graves
I had SSH. � Thanks again, ����� Spencer Graves On 2020-04-03 15:17, Max Turgeon wrote: > > Hi Spencer, > > > Did you follow the instructions here? > https://help.github.com/en/github/authenticating-to-github/connecting-to-github-with-ssh > > > Once the key is setup, you

Re: [R-pkg-devel] GitHub problems

2020-04-03 Thread Spencer Graves
ommit" and "git push".   However, this has my GitHub password in a plain text ".git" file on my hard drive.  I think the hard drive on my computer is encrypted, so maybe that's not a problem.   Am I not allowed to use SSH with a GitHub repository that's not m

Re: [Rd] status of Java & rJava?

2020-03-30 Thread Spencer Graves
  Tomas Kalibera kindly suggested I might have both 32- and 64-bit Java installed, and it might be accessing the 32-bit.  He further suggested:    R CMD check Ecfun_0.2-4.tar.gz --no-multiarch   That worked.  Thanks, Thomas.   Spencer On 2020-03-29 08:03, Spencer Graves

Re: [Rd] status of Java & rJava?

2020-03-29 Thread Spencer Graves
e?" under Windows 10.  "00install.out" and "Sys.getenv('PATH')" follow.  "library(rJava)" seemed to work, and "help(pac='rJava') displays 0.9-12.  Suggestions?  Thanks, Spencer Graves * installing *source* package 'Ecfun' ... ** using staged installation ** R ** inst

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