Re: [R-pkg-devel] Changing R Package Maintainer

2023-04-07 Thread Uwe Ligges
Has anyone else done this before or does anyone know the best procedure? Also, given that this isn't a transfer of ownership, I'm still the same person with a different name, would that make this process easier? Same process as we do not know whether it is the same person behind the other

Re: [R-pkg-devel] What checks are required before uploading a package to CRAN?

2023-04-05 Thread Uwe Ligges
loaded the file to R-release, and I get automatic emails every other day from Uwe Ligges telling me my package has been checked and built. Interesting, you shouild receive one mail for each upload. Can yoiu tell me when you got an unexpected one? Can you forward it to me? I do not see a package

Re: [R-pkg-devel] correcting errors in an existing package

2023-04-02 Thread Uwe Ligges
be a problem on CRAN or winbuilder. You have to have qpdf installed and on your PATH. Best, Uwe Ligges __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel

Re: [R-pkg-devel] How to declare Bioconductor Dependencies in the Description File of my R Package

2023-03-17 Thread Uwe Ligges
The user should set the CRAN+BioC via setRepositories() and then run install.packages() will install all dependencies automatically. Of course, if you install from a local repository without the required packages or from a USB drive, R cannot resolve dependencies. Best, Uwe Ligges On

Re: [R-pkg-devel] How to declare Bioconductor Dependencies in the Description File of my R Package

2023-03-17 Thread Uwe Ligges
On 17.03.2023 13:09, Ruff, Sergej wrote: Thanks, I thought about changing it to "Imports", but will it cause any issues when CRAN runs checks on my package and limma isn´t available on CRAN? No, BioC is a mainstream repository. Best, Uwe Ligges __

Re: [R-pkg-devel] Checking timings of packages

2023-03-14 Thread Uwe Ligges
-devel-windows-x86_64 machine (at the very Yes. Best, Uwe Ligges least, the CPU description of win-builder matches that from <https://cran.r-project.org/web/checks/check_flavors.html#r-devel-windows-x86_64>). __ R-package-devel@r-project.org

Re: [R-pkg-devel] URL timeout in win-builder check: suggestions?

2023-03-13 Thread Uwe Ligges
browser.   This link is a harmless bit of fluff (click through if you want to see), but I don't want it causing hiccups in my CRAN submission (i.e., I could take it out if necessary but would prefer not to ...)     Suggestions? Keep and submit. Best, Uwe Ligges === * checking

Re: [R-pkg-devel] OpenCL R packages on CRAN

2023-03-13 Thread Uwe Ligges
corresponding graphics hardware is not available on the build/check machines, but if possible you shopudl support that users with the required hardware can compile the package from sources on Windows, too. Best, Uwe Ligges __ R-package-devel@r

Re: [R-pkg-devel] FAIL output in CRAN checks?

2023-03-09 Thread Uwe Ligges
(which takes about 70/95 seconds on most other platforms) https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-clang/lme4-00check.html Not shown anymore, I guess ome hicc up on the check machine. Or in case you download data some internet access issue? Best, Uwe Ligges   Doe

Re: [R-pkg-devel] CRAN-pretest install error on r-devel-windows-x86_64

2023-02-28 Thread Uwe Ligges
Can you try again? Best, Uwe Ligges On 23.02.2023 08:20, 安拉維 AALA WILSON JR S98107020 wrote: Hi everyone, I am trying to submit a new package in CRAN. The results from devtools::check() returned with no errors, warnings, nor notes. Upon submitting the package tarball, i received the

Re: [R-pkg-devel] Unable to load Windows NETIO.SYS and WINSPOOL.DRV DLLs

2023-02-12 Thread Uwe Ligges
If you need some details, perhaps simply ask Michael Lawrence. He certainly knows better than most readers what the issues are, or at least were when RGtk2 got archived. Best, Uwe Ligges On 12.02.2023 17:37, David Sterratt wrote: On Sat, 2023-02-11 at 18:11 +0300, Ivan Krylov wrote: On Sat

Re: [R-pkg-devel] Unable to load Windows NETIO.SYS and WINSPOOL.DRV DLLs

2023-02-12 Thread Uwe Ligges
Note that Gtk2 is end of life, Gtk4 was released 3 years ago already. There are reasons why neither the former RGtk2 maintainer nor the CRAN team decided to maintain RGtk2 further on. Best, Uwe Ligges On 11.02.2023 16:11, Ivan Krylov wrote: On Sat, 11 Feb 2023 11:19:42 + David Sterratt

Re: [R-pkg-devel] Help with CRAN-only Windows-only package build error: System.Rd not found

2023-01-31 Thread Uwe Ligges
This was a temporary hicc up on the Windows machine, all check should have been triggered again. Best, Uwe Ligges On 31.01.2023 16:02, Mike Blazanin wrote: Hi all, trying to troubleshoot my way through my first CRAN package submission. I've addressed all the other issues so far (much t

Re: [R-pkg-devel] Inconsistent R CMD Check results

2023-01-25 Thread Uwe Ligges
g/profiling could reveal the true cause. Yes, it may even be some OS update, or just coincidence that the system was idling the last time your package got checked. Note that CRAN systems are expected to be slower than, e.g., your laptop, as the servers use multi core CPUs with rather low fre

Re: [R-pkg-devel] Pretest failed and I fail to find out what's the problem

2023-01-22 Thread Uwe Ligges
. Best, Uwe Ligges On 22.01.2023 19:55, Ben Bolker wrote:   Seems pretty mysterious to me! (No cryptic NOTEs anywhere in the logs, other than the inevitable "Note_to_CRAN_maintainers")   I will be curious to see if anyone else finds something, but my guess is a hiccup on the CRA

Re: [R-pkg-devel] corrupted NAMESPACE file

2023-01-20 Thread Uwe Ligges
UTF-16BE". I'd believe much more should have gone wrong then. Perhaps it was some editor that really messed it up? Best, Uwe Ligges   Thanks,   Spencer Duncan Murdoch   ???   I have Bitdefender installed on this computer.  A "Quick Scan" produced noth

Re: [R-pkg-devel] corrupted NAMESPACE file

2023-01-20 Thread Uwe Ligges
itor not to create files with BOM. You can also fix in R: x <- readLines(..., encoding="UTF-8-BOM") writeLines(x, ..) Best, Uwe Ligges __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel

Re: [R-pkg-devel] Rcmd check skip example

2023-01-19 Thread Uwe Ligges
ft why the label their version 10.x.y as Windows 11 (well, they labelled version 5.x.y as Windows 2000 etc., so nothing new here). Best, Uwe Ligges Thanks for spotting and reporting this. Tomas best, Mai Zhou [[alternative HTML version deleted]] __

[R-pkg-devel] new toolchain "RTools43" for building devel binaries (both R base and packages)

2023-01-04 Thread Uwe Ligges
ools/rtools43/rtools.html>. Best, Uwe Ligges __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel

Re: [R-pkg-devel] Help with fixing problems for new R package

2022-12-20 Thread Uwe Ligges
7; found I've tried updating the HTML Tidy on my mac as I read online that should solve this issue, but nothing changed. Could you help me solve these issues? Is it in the PATH, i.e. can R find it? Best, Uwe Ligges Thank you in advance! Best regards [[alterna

Re: [R-pkg-devel] How do I enable to show data in inst/extdata in data() || lazy load

2022-12-20 Thread Uwe Ligges
On 20.12.2022 00:58, Sanjeev Sariya wrote: Hi, thank you for the reply. Do you need this to be a file? Could it be a pre-parsed R object instead? Yes, and that can go into an .RData file. Best, Uwe Ligges I need to provide an external data/file in the R package. This has come as a

Re: [R-pkg-devel] Question on Description/Citing Feedback

2022-12-19 Thread Uwe Ligges
Well, the CRAN question is more a suggestion that refernces for a package can be specified in the Descrioption field of the DESCRIPTION file so that poeple directly see the references even befiore downloading the package. This is a (strong) suggestion, not compulsory. Best, Uwe Ligges On

Re: [R-pkg-devel] NOTEs - Problems with news in 'NEWS.md'

2022-12-12 Thread Uwe Ligges
age passes the checks, an auto generated message will go to the old maintainer address. But for that to happen, the second note has to be fixed: 2. Problems with news in 'NEWS.md': No news entries found. See ?news which explains how NEWS.md files should be written. Best, Uwe Lig

Re: [R-pkg-devel] Error uploading file on CRAN

2022-12-01 Thread Uwe Ligges
likely.  When I run on a Mac, I see a directory on the Mac build machine in the error message. Yep, have you reported this to the author of that package already? If not, please do so. Best, Uwe Ligges Does it work if you run install.packages('Greymodels', type = 'source&

Re: [R-pkg-devel] Two packages with the same name

2022-11-28 Thread Uwe Ligges
we call mainstream repositories. In order to prevent what happened, choose a rather unique name - and perhaps consider to submit that to CRAN, too. We see "flashr" and similar names are also used in other projects, so one more point for a new name. Best, Uwe Ligges Hth, Dir

Re: [R-pkg-devel] Resubmission of archived package after email change

2022-11-24 Thread Uwe Ligges
se fix and resubmit. Best, Uwe Ligges CRAN Repository Policy Submission [...] Explain any change in the maintainer’s email address and if possible send confirmation from the previous address (by a separate email to cran-submissi...@r-project.org) or explain why it is not possible. Cheers, Simon

[R-pkg-devel] CRAN winter break from Dec 22 to Jan 5

2022-11-24 Thread Uwe Ligges
Dear package developers, CRAN submissions will be closed for winter break from Dec 22, 2022 to Jan 5, 2023 (GMT). Best, Uwe Ligges __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel

Re: [R-pkg-devel] request to remove/archive package from CRAN

2022-11-23 Thread Uwe Ligges
contact c...@r-project.org to ask for the archival. Yes, please write to CRAN@... and also mention the name for the replacement package in the same message. Best, Uwe Ligges __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman

Re: [R-pkg-devel] Examples with CPU time is greater than elapsed time.

2022-11-07 Thread Uwe Ligges
rallel code. Best, Uwe Ligges I can't reproduce the note on win-builder: https://win-builder.r-project.org/ as it's running on Windows but the note appears on debian tests. I'm not able to reproduce it on my local machine either with Ubuntu 22.04. I'm wondering what the note is

Re: [R-pkg-devel] Cannot submit package due to false-positive rejection

2022-10-31 Thread Uwe Ligges
can run it on huge data, as your users don't want to wait for hours in order to see the principles of the function call Best, Uwe Ligges On submission of your package, the examples will be run with and without \donttest{}. However, the periodic (daily?) checks that get run

Re: [R-pkg-devel] Error when install binary from CRAN but not if install from source - Macintoh, lme4, Matrix, buildmer

2022-10-19 Thread Uwe Ligges
Please let the Simon (Mac maintainer for CRAN) know. For Windows, the revdeps get rebuild automatically. Best, Uwe Ligges On 19.10.2022 09:39, Martin Maechler wrote: Duncan Murdoch on Tue, 18 Oct 2022 15:17:33 -0400 writes: > I see the same thing. This sounds like a problem

Re: [R-pkg-devel] Help - Shiny app on CRAN

2022-10-18 Thread Uwe Ligges
See my response to the list. Best, Uwe Ligges On 18.10.2022 14:11, Jahajeeah, Havisha wrote: Hello, Grateful if you could please help with the following comments: Please add small executable examples in your Rd-files to illustrate the use of the exported function but also enable automatic

Re: [R-pkg-devel] no incoming checks

2022-09-28 Thread Uwe Ligges
On 28.09.2022 17:33, Uwe Ligges wrote: Dear developers, currently CRAN incoming checks are offline due to network issues at my university. I hope this will be resolved early tomorrow. Best, Uwe Ligges This has been resolved last night (by a reboot of the central switch of the

[R-pkg-devel] no incoming checks

2022-09-28 Thread Uwe Ligges
Dear developers, currently CRAN incoming checks are offline due to network issues at my university. I hope this will be resolved early tomorrow. Best, Uwe Ligges __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r

Re: [R-pkg-devel] Help - Shiny app on CRAN

2022-09-26 Thread Uwe Ligges
ed. You apparently declared it as Type "Shiny application" rather than "Package" in the DESCRIPTION field? Simply omit the Type field or decalre it as Package. Best, Uwe Ligges * DONE Status: 1 ERROR I am not sure how to fix the problems and I would appreciate your

Re: [R-pkg-devel] Unable to create manual

2022-09-19 Thread Uwe Ligges
latter, but the mechanism works on CRAN, so you do not ned to worry about that. Best, Uwe Ligges Thanks for your help, On Wed, Sep 14, 2022 at 3:14 PM Uwe Ligges <mailto:lig...@statistik.tu-dortmund.de>> wrote: On 14.09.2022 23:54, Duncan Murdoch wrote: > On 1

Re: [R-pkg-devel] windows i386

2022-09-15 Thread Uwe Ligges
On 13.09.2022 13:14, Florian Schwendinger wrote: Dear R-package-developers, On 'r-oldrel-windows-ix86_x86_64' I get in 'check.log' the error message "Error: package 'highs' is not installed for 'arch = i386'" the statement that for arch = i386 the package is not installed is correct and expe

Re: [R-pkg-devel] Unable to create manual

2022-09-12 Thread Uwe Ligges
... looks like a package Converting parsed Rd's to LaTeX ... Creating pdf output from LaTeX ... Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, : pdflatex is not available Install some LaTeX distribution? Best, Uwe Ligges Error in texi2dvi(file = file, pdf =

Re: [R-pkg-devel] Advice on elegant way to alias function name

2022-09-01 Thread Uwe Ligges
On 01.09.2022 16:48, J C Nash wrote: Hi, I've a package where it has been suggested that one of the functions -- call it "myfn()" -- should be called something else, say "thefn()". Of course, I'll need to keep the old name around for a while. Web search has suggested simple assignment of

Re: [R-pkg-devel] dates in NEWS.Rd headers are ignored

2022-08-29 Thread Uwe Ligges
ckage="sn”) + click on “Package NEWS ? Currently you cannot, as the code that translates to html does not handle the dates. We will discuss this. Best, Uwe Best wishes, Adelchi On 29 Aug 2022, at 12:36, Uwe Ligges wrote: On 29.08.2022 11:01, Adelchi Azzalini wrote: Hi. In the la

Re: [R-pkg-devel] dates in NEWS.Rd headers are ignored

2022-08-29 Thread Uwe Ligges
ws(package="sn") str(db) db$Date and all dates were read correctly. Best, Uwe Ligges --- Adelchi Azzalini http://azzalini.stat.unipd.it R> sessionInfo() R version 4.2.1 (2022-06-23) Platform: aarch64-apple-darwin20 (64-bit) Running under: macOS Monterey 12.5.1 Matrix products:

Re: [R-pkg-devel] CRAN valgrind reports with zero leaks - actionable?

2022-08-25 Thread Uwe Ligges
On 25.08.2022 00:12, Dirk Eddelbuettel wrote: Simon, What you attempt to answer is not the relevant question (as Ivan concurred in private email). I can only invite you again to maybe venture to answer the question I asked rather than belabor a point I didn't make (even if you fancy lecturi

Re: [R-pkg-devel] toy example for testing purpose

2022-08-17 Thread Uwe Ligges
ently only subseta of provided functions get executed in vignettes... Best, Uwe Ligges Thanks, Joan / />>>>>>>>>>>>>>>>>>>>>>>>> Putting the lengthy examples in \donttest is correct. However, it would be great

Re: [R-pkg-devel] package stuck in CRAN 'pretest' for a day

2022-07-15 Thread Uwe Ligges
On 15.07.2022 16:07, Tomas Kalibera wrote: On 7/15/22 14:50, Georgi Boshnakov wrote: Submitted package 'fGarch' has been stuck in CRAN 'pretest' for about 24 hours now. The same seems to hold for several other packages. Is this something that can be expected normally? The pretest service s

Re: [R-pkg-devel] problems with HTML version of manual

2022-05-31 Thread Uwe Ligges
My suggestion is to check with a recent version of R-devel which should produce god results, i.e. produces messages that need our attention. Best, Uwe Ligges On 31.05.2022 16:17, John Fox wrote: Dear Adelchi, This problem has been reported before: see <https://stat.ethz.ch/pipermai

Re: [R-pkg-devel] How to structure LICENSE for multiple licenses?

2022-05-25 Thread Uwe Ligges
where the LICENSE file contains the CRAN template for the MIT license only Best, Uwe Ligges The syntax MIT + file LICENSE is because the MIT license is a template, and I need to fill in the template parameters in the LICENSE file. What's the right way to structure the LICENSE file

Re: [R-pkg-devel] Issue with HTML version of manual

2022-04-28 Thread Uwe Ligges
he meantime, packages that got auto-rejected only for this reasons should have been processed. If yours not, please simply resubmit. Best, Uwe Ligges __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel

Re: [R-pkg-devel] uuid 1.1-0 binary not available for Windows?

2022-04-22 Thread Uwe Ligges
dated on CRAN? For what it's worth, https://cran.r-project.org/package=uuid does indicate that the Windows binary for r-release is not available, but the link points to a non-existent ReadMe file. Indeed, both the Readme and the binary vesion should be there and apparent

Re: [R-pkg-devel] Detritus reported by r-hub builder check_for_cran

2022-01-14 Thread Uwe Ligges
it is not part of your package it may be related due to failing MikTeX when building, e.g., the manual or vignettes? If hat worked otherwise I'd ignore it unless it also happens on CRAN. Best, Uwe Ligges See https://builder.r-hub.io/status/dmdScheme_1.2.7.tar.gz-b5319e2e45f14b43b997198

Re: [R-pkg-devel] R package not passing automatic checks

2021-12-18 Thread Uwe Ligges
Note that misspelled words are never a reason for auto rejection as thes emay be false positives. Best, Uwe Ligges On 18.12.2021 23:06, Lucas Godoy wrote: Thank you for your help, Sebastian. The main problems were a mispelled word in DESCRIPTION and the time of compilation for the vignettes

Re: [R-pkg-devel] New CRAN checks on r-devel-windows-x86_64-new-UL and the installed fonts

2021-12-16 Thread Uwe Ligges
})$", "\\1", dir("c:/WIndows/fonts"))) dat fon ini ttc ttf xml 1 192 1 16 127 1 So there are 127 *.ttf files installed, but systemfonts::system_fonts() does not find any of these. Best, Uwe Ligges This would be an empty character vector on my Alpine Linux serv

Re: [R-pkg-devel] Cannot find source of devtool::check() warnings in R code

2021-12-09 Thread Uwe Ligges
NAMESPACEs pROC and stats, both offering functions of the same name. That means you should only import selectively from these NAMESPACEs what you need. Best, Uwe Ligges The 00install.out file does not inform me about where, in my R code, those warnings were triggered.  I have searched my code for

[R-pkg-devel] CRAN winter break Dec 21 to Jan 3

2021-12-06 Thread Uwe Ligges
Dear package developers, CRAN will close its incoming submission queue on Dec 21 and will open it again on Jan 3. Best, Uwe Ligges __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel

Re: [R-pkg-devel] CRAN no longer checking for solaris?

2021-12-06 Thread Uwe Ligges
the future of scientific computing in 2021 would still/again happen on platforms without support for long doubles / extended precision. Best, Uwe Ligges Avi On Sun, Dec 5, 2021 at 8:56 PM Dirk Eddelbuettel wrote: On 5 December 2021 at 17:23, Travers Ching wrote: | I see that there

[R-pkg-devel] winbuilder and incoming checks offline on Nov 1 from 10 am CET

2021-10-31 Thread Uwe Ligges
Dear all, winbuilder service and CRAN incoming checks (submission is possible) will be offlne tomorrow (Nov 1) from 10 am CET to not later than 6pm. Some CRAN hardware in Dortmund will be physically migrated to a new locatiom. Best, Uwe Ligges (CRAN team

Re: [R-pkg-devel] http error handling in packages

2021-09-08 Thread Uwe Ligges
ub.com/obrl-soil/slga/blob/a770dac9f101995db92e2d42476af8705971d80c/R/get_data.R#L61 I just want to clarify whether the problem is an overly brief error message, or my use of stop() in this context? What is the preferred pattern for handling these kinds of errors? Exit gracefully, i.e. without an ERROR. Best,

Re: [R-pkg-devel] Additional CRAN Checks

2021-09-07 Thread Uwe Ligges
ut they do strongly indicate that the package author is making a mistake. The only unclear statement is the 2.01, but compareVersion() does a sensible thing. So I do not worry too much. Best, Uwe Ligges Thanks Colin On September 6, 2021 4:02:08 AM PDT, Colin Gillespie wrote: Dear All

Re: [R-pkg-devel] Checking package dependencies before loading namespace

2021-08-31 Thread Uwe Ligges
ry to install packages from. Best, Uwe Ligges On 31.08.2021 23:33, Duncan Murdoch wrote: People shouldn't be able to install your package unless the "hard" dependencies are available. If EBImage isn't essential to your package, you should make it a "soft" depen

Re: [R-pkg-devel] "Connections left open" Error

2021-08-27 Thread Uwe Ligges
luster explicitly and in the end stop exactly that cluster? Best, Uwe Ligges Alan [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/

Re: [R-pkg-devel] submitting package update failed, since old version out of date (?)

2021-08-18 Thread Uwe Ligges
But the example timing...: Please reduce each example to less than 5 sec. Best, Uwe Ligges On 17.08.2021 15:53, Aisouda Hoshiyar wrote: * checking CRAN incoming feasibility ... NOTE Maintainer: ‘Aisouda Hoshiyar ’ is just a change of the maintainer and already declared in my cran-comments.md

Re: [R-pkg-devel] Invalid URLs in Description Due to Redirection

2021-07-31 Thread Uwe Ligges
s fine. Best, Uwe Ligges On 31. Jul 2021, at 11:55, Uwe Ligges <mailto:lig...@statistik.tu-dortmund.de>> wrote: On 31.07.2021 10:31, Dr. rer. nat. Michael Thrun wrote: Dear R developers, I have several packages on CRAN and usually I can resolve all issues without bothering others

Re: [R-pkg-devel] C++17

2021-07-31 Thread Uwe Ligges
2) If we need to adjust a package currently on CRAN owing to platform errors, should we keep the version the same or submit with a version bump? Any changes in new submissions need a new version number. Best, Uwe Ligges Thanks. THK On Fri, Jul 30, 2021 at 2:06 PM Dirk Eddelbuettel

Re: [R-pkg-devel] Invalid URLs in Description Due to Redirection

2021-07-31 Thread Uwe Ligges
ove the website. Does someone know, how to resolve this issue? Well, the webpage reports Status 301 for permamently moved content. It should just be a redirection. Then you can keep it as is. Best, Uwe Ligges Should I use another redirection option in the settings of my hosting provider? Sho

Re: [R-pkg-devel] Adding package with 3rd party library to CRAN: legal question

2021-07-25 Thread Uwe Ligges
A package can have one or more licneses, but they have to apply to the whole package, otehrwise the componentes havbe to be distributed separately. Also note that CRAN accepts FOSS licenses. This sounds like a case that CRAN will not agree to distribute the (non FOSS) binaries. Best, Uwe

Re: [R-pkg-devel] package test returns error when R version 4.1.0

2021-07-08 Thread Uwe Ligges
It was likely an interim version of Rcpp (which never made it to CRAN) that was causing trouble. The winbuilder queues are set up to test against most recent CRAN submissions which caused the trouble in this case. Best, Uwe Ligges On 07.07.2021 22:42, Murray Efford wrote: Likewise: secr now

Re: [R-pkg-devel] Error uploading package to CRAN that depends on packages hosted in GitHub

2021-07-07 Thread Uwe Ligges
On 07.07.2021 17:21, Duncan Murdoch wrote: On 07/07/2021 9:08 a.m., Uwe Ligges wrote: On 07.07.2021 13:18, Duncan Murdoch wrote: On 07/07/2021 5:29 a.m., David Enrique Payares García wrote: Hello everybody, I developed an R package that depends on packages hosted in GitHub. In the

Re: [R-pkg-devel] package test returns error when R version 4.1.0

2021-07-07 Thread Uwe Ligges
Can you pls try again now. Best, Uwe Ligges On 06.07.2021 23:18, Murray Efford wrote: I also get from Winbuilder: ** byte-compile and prepare package for lazy loading ERROR: lazy loading failed for package 'secr' even for the tar.gz of the version secr 4.4.4 that currently passes

Re: [R-pkg-devel] invalid DOIs

2021-07-07 Thread Uwe Ligges
PTION Status: Internal Server Error Message: 500 Many publishers (one worse than the other) seem to have very flakey internet resources and web servers are poorly set up, hence simply ignore this. Best, Uwe Ligges The relevant part in the DESCRIPTION file which caused this note looks

Re: [R-pkg-devel] Error uploading package to CRAN that depends on packages hosted in GitHub

2021-07-07 Thread Uwe Ligges
'extrantsr' As the message says: You likely have declared some import directives via the NAMESPACE file. In that case you have to import from a package and hence list it in the Imports field. If the package is not available from a mainsteam repository and you want to suggest it only,

Re: [R-pkg-devel] clarification about missing suggested packages.

2021-07-07 Thread Uwe Ligges
a Suggests: dependency on package B that is in good standing on CRAN but is not available on a particular CRAN testing platform, as long as package A only uses package B conditionally. Yes. Best, Uwe Ligges   Thoughts/opinions/evidence?   cheers     Ben Bolker --- From the current CRAN

Re: [R-pkg-devel] package test returns error when R version 4.1.0

2021-07-05 Thread Uwe Ligges
What happens when you test it on winbuilder? It is configured like the CRAN incoming checks and there should be all relevant packages available. Best, Uwe Ligges On 05.07.2021 11:16, Gianmarco Alberti wrote: Hello, Further to my earlier email, I think I have located a likely issue, and I

Re: [R-pkg-devel] Change package maintainer

2021-07-02 Thread Uwe Ligges
details. Many thanks to all. Lluís Revilla On Fri, 2 Jul 2021 at 08:38, Uwe Ligges wrote: On 01.07.2021 23:52, Duncan Murdoch wrote: On 01/07/2021 3:11 p.m., Dirk Eddelbuettel wrote: On 1 July 2021 at 20:00, Lluís Revilla wrote: | I have a question related to changing maintainers. | What h

Re: [R-pkg-devel] Change package maintainer

2021-07-01 Thread Uwe Ligges
ver. ... and if in doubt, ask the CRAN team and give them details. Best, Uwe Ligges Duncan Murdoch __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel

Re: [R-pkg-devel] Change package maintainer

2021-07-01 Thread Uwe Ligges
Both ways are fine with us, but the auto confirmation request will be sent out in any case. Best, Uwe Ligges On 01.07.2021 17:57, rmendelss gmail wrote: Hi Uwe: Is what you described the preferred way to change maintainers (I have just taken over another package), or would you prefer

Re: [R-pkg-devel] Change package maintainer

2021-07-01 Thread Uwe Ligges
1. Correct the name of the new maintainer whose family name is probably not "Developer". Apparently nobody spotted this in your initial submission. 2. After successful submission to CRAN, the old maintainer will receive a confirmation request which you have to respond to. Best, Uwe Li

Re: [R-pkg-devel] fviz_nbclust

2021-06-22 Thread Uwe Ligges
", so you have insufficient permissions to write into the main library. EIther install to another library or run the task with succifient permissions (sudo?). Best, Uwe Ligges Thanks, Matthew Sent with [ProtonMail](https://protonmail.com/) Secure Email. [[alternative HTML versi

Re: [R-pkg-devel] Win-builder R-devel doesn't appear to be running examples

2021-06-17 Thread Uwe Ligges
imply try again tomorrow. Best, Uwe Ligges On 16.06.2021 20:03, Kai Aragaki wrote: Thank you both. My concern then is with the lack of output in the examples and tests directory - where before there was (for each arch) a pdf output of an image generated by an example (the output of the ex

Re: [R-pkg-devel] Win-builder R-devel doesn't appear to be running examples

2021-06-16 Thread Uwe Ligges
Reason is that we currently plan not to support 32-bit Windows as of R-4.2.0, i.e. we stopped to build and check for 32-bit Windows in R-devel. Best, Uwe Ligges Am 16.06.2021 um 13:31 schrieb Duncan Murdoch: On 15/06/2021 5:29 p.m., Kai Aragaki wrote: Hello all - I've been testi

Re: [R-pkg-devel] Windows load error installing package SOLVED - additional note

2021-06-13 Thread Uwe Ligges
y. I see. Note the Makevars file for non Windows OS should be in the same place. Best, Uwe JN On 2021-06-12 7:27 p.m., Uwe Ligges wrote: On 12.06.2021 16:39, J C Nash wrote: Two minor notes: 1) The Writing R Extensions manual, as far as I can determine, does not inform package devel

Re: [R-pkg-devel] Windows load error installing package SOLVED - additional note

2021-06-12 Thread Uwe Ligges
On 12.06.2021 16:39, J C Nash wrote: Two minor notes: 1) The Writing R Extensions manual, as far as I can determine, does not inform package developers that Makevars.win needs to be in the src/ subdirectory. I followed the example of some other packages to choose where to put it. I just s

Re: [R-pkg-devel] Suggesting gurobi

2021-06-07 Thread Uwe Ligges
as I know there is not CRAN-like repo with gurobi. Following the CRAN policies you can exolain in the Description field of the DESCRIPTION file how to get that package to your users. Best, Uwe Ligges Dirk __ R-package-devel@r-project.org mailing

Re: [R-pkg-devel] InvalidUrlException for fontawesome icons in Rmarkdown vignette

2021-05-17 Thread Uwe Ligges
Perhaps simply ask the CRAN crew to run the checks again, but as you do not say which package this is about etc, we can hardly help. Best, Uwe Ligges On 16.05.2021 08:16, Vincent Nijs wrote: Hi, I submitted a minor update to a package and ran into the vignette warning/error shown. FYI the

Re: [R-pkg-devel] Package required and available but unsuitable version: 'gt'

2021-05-17 Thread Uwe Ligges
Pls try again, it shoudl work. Best, Uwe Ligges On 17.05.2021 14:34, Daniel Sjoberg wrote: Hello, I maintain a package that depends on the gt package. Last week, the gt package released a new version, v0.3.0; all the Windows binaries for the new version have been built and are available (and

Re: [R-pkg-devel] State of stringi and stringr

2021-05-13 Thread Uwe Ligges
.0.1 with r-devel-windows-ix86+x86_64. Can I assume this is a transient problem and advise CRAN accordingly when I update my own package? Yes. Best, Uwe Ligges __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r

Re: [R-pkg-devel] JSS article as package vignette introduces a dependency on R >= 4.0.4

2021-05-05 Thread Uwe Ligges
e saying that “The following files are already in R ... Please remove them from your package.” - or the package now depends on R >= 4.0.4 As the package is shipped with the already built vignette, this does not induce the version requirement. Best, Uwe Ligges Does anyone know of a way out of

Re: [R-pkg-devel] Winbuilder error for rgl on R 3.6.3

2021-04-26 Thread Uwe Ligges
What happens if you simply try again? Best, Uwe Ligges On 26.04.2021 20:32, Tim Schäfer wrote: Dear R experts, I am testing my R package 'fsbrain' using the Winbuilder service [1] before submitting a new version to CRAN. All checks pass under R versions 4.0.5 and 4.1.0 alph

Re: [R-pkg-devel] Package from non-mainstream repository

2021-04-21 Thread Uwe Ligges
I need to do to get rid of that note? You cannot do anything, this note is fine and a CRAN team member can install the package if needed. Best, Uwe Ligges * checking CRAN incoming feasibility ... NOTE Maintainer: 'Barbara Lerner ' Suggests or Enhances not in mainstream repositorie

Re: [R-pkg-devel] checking LazyData ... WARNING

2021-04-14 Thread Uwe Ligges
On 14.04.2021 00:43, Rafael CM wrote: Dear all, I am submitting the RTIGER package and I have the following warning: checking LazyData ... WARNING A full message would be needed Best, Uwe Ligges I have saved the data with the optimal compression format. Could someone help me? Best

Re: [R-pkg-devel] error messages

2021-04-14 Thread Uwe Ligges
Or simply navigate to the install log which is avaiable from the links you got. Best, Uwe Ligges On 14.04.2021 03:47, Dirk Eddelbuettel wrote: On 14 April 2021 at 01:03, csmatyi wrote: | Debian | | * using log directory ‘/srv/hornik/tmp/CRAN/hybridogram.Rcheck’ | * using R Under development

Re: [R-pkg-devel] Checks on wrong package?

2021-04-12 Thread Uwe Ligges
Actually you got Flavor: r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64 Check: top-level files, Result: NOTE Non-standard files/directories found at top level: 'News.md' 'README.Rmd' 'cran-comments.md' which shold be fixed. Best, Uwe Ligges

Re: [R-pkg-devel] CRAN nightly tests

2021-04-09 Thread Uwe Ligges
recently, my concerned is that th Solaris test machine may hav been blocked. The list does not know. Even the CRAN team does not know the IP address. Professor Ripley runs that machine, so you may ask him via c...@r-project.org. Best, Uwe Ligges Thanks, -Roy

Re: [R-pkg-devel] R package depends on Bioconductor packages RTIGER

2021-04-07 Thread Uwe Ligges
Reason is that BioC 3.13 does not offer a new rtracklayer binary which the winbuilder machine typically uses. As this also does not install from sources for me. So this seems hard to set up. Best, Uwe Ligges On 07.04.2021 12:18, Rafael CM wrote: Dear all, I am trying to submit a

Re: [R-pkg-devel] Package Rejection Error Help

2021-04-07 Thread Uwe Ligges
13 is what we should use to check with R-devel and that was recetnly still pretty iunstable. Best, Uwe Ligges package installation. See this answer on Bioinformatics stackexchange: https://bioinformatics.stackexchange.com/a/3375/51 Hope that helps! -Robert On Tue, Apr 6, 2021 at 1:14 PM And

Re: [R-pkg-devel] Package Rejection Error Help

2021-04-06 Thread Uwe Ligges
ly or need manual attention in case of the really very few exceptions. Best, Uwe Ligges Best, Patrick Le 06/04/2021 à 17:33, Uwe Ligges a écrit : Two Notes: Found the following (possibly) invalid URLs:  URL: http://imagemagick.org/script/download.php (moved to https://imagemagick.org/

Re: [R-pkg-devel] Package Rejection Error Help

2021-04-06 Thread Uwe Ligges
low moved content as appropriate. * checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory Simply omit the field if you have no data. Best, Uwe Ligges On 06.04.2021 16:27, Andrew Dhawan wrote: Dear all, I am a bit puzzled by this error for the sigQC

Re: [R-pkg-devel] checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory

2021-04-02 Thread Uwe Ligges
On 01.04.2021 07:55, Tim Hulsen wrote: r-release-windows-ix86+x86_64 A new check, you declare LazyData in your DESCRIPTION file which is meaningless. So please simply omit that line. Best, Uwe Ligges Op wo 31 mrt. 2021 om 14:31 schreef Duncan Murdoch : On 31/03/2021 8:28 a.m., Tim

Re: [R-pkg-devel] FW: [CRAN-pretest-archived] CRAN submission RIBMDB 1.0-21

2021-03-30 Thread Uwe Ligges
Pls write your message to c...@r-project.org Best, Uwe Ligges On 30.03.2021 09:05, Binit Kumar wrote: Hi Team, I mentioned some comment before uploading the package for publishing i.e. "My package RIBMDB has a dependency on CLI driver which has some IBM proprietary C code due to whi

[R-pkg-devel] CRAN incoming checks offline for one more day

2021-03-25 Thread Uwe Ligges
Dear package developers, CRAN incoming submissions are currently not being processed due to maintainance work on the CRAN check farm. This may take one more day. Best, Uwe Ligges (CRAN team) __ R-package-devel@r-project.org mailing list https

[R-pkg-devel] CRAN incoming submissions and winbuilder downtime Mar 19 - Mar 20

2021-03-17 Thread Uwe Ligges
, but not being processed in this time. reason: maintainance at the electrical power infrastructure in Dortmund. Best, Uwe Ligges for the CRAN team __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel

Re: [R-pkg-devel] rcmdcheck reports wrong version of lattice

2021-03-08 Thread Uwe Ligges
hecks, but I guess you have an outdated version of lattice (or borken installtion of lattice) in another library of packages that is used for these checks? Best, Uwe Ligges The error persists, even when I reinstall lattice. What am I missing? Best regards, Thierry sessioninfo::session_inf

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