Re: [R-SIG-Mac] Using X11 from the mac terminal

2011-06-06 Thread Duncan Murdoch
and I have Sys.getenv("DISPLAY") [1] "0.0.0.0:0" I'm sure this used to work, but something has changed in the last few months. Any ideas? I'm on a Mac right now that works, but it shows > X11() > Sys.getenv("DISPLAY

Re: [R-SIG-Mac] test failures

2011-06-30 Thread Duncan Murdoch
, and sometimes they don't. Duncan Murdoch Thanks #!/bin/sh -ev make -k check || exit 2 make[2]: warning: jobserver unavailable: using -j1. Add `+' to parent make rule. WARNING: ignoring environment value of R_HOME Testing examples for package 'base' Testing ex

Re: [R-SIG-Mac] Compiling Source packages in Mac OS 10.5.8

2011-07-19 Thread Duncan Murdoch
ect.org/bin/macosx/ for how to get those for your particular version of OS X. Duncan Murdoch Particulars of my system: Mac PowerPC with 1.8 GHz Processor and 1.5 GB Memory XCode 3.1.4 GNU Fortran 4.2.3 Tcl/TK latest. Output from sessionInfo() R version 2.13.1 (2011-07-08) Platform: powerpc

Re: [R-SIG-Mac] accented vowels

2011-08-15 Thread Duncan Murdoch
bly your system really is using MacRoman or some other local encoding; in that case, iconv(x, "", "UTF-8") should convert from the local encoding to UTF-8. I think declaring everything to be UTF8 may be sufficient. When I use list.files(), I see the encoding listed as &q

Re: [R-SIG-Mac] accented vowels

2011-08-15 Thread Duncan Murdoch
On 11-08-15 7:48 PM, Denis Chabot wrote: Le 2011-08-15 à 19:06, Duncan Murdoch a écrit : On 11-08-15 2:42 PM, Denis Chabot wrote: Hi, I usually do not give second thought to accented vowels and R handles everything fine thanks to UTF8 being used in my R scripts. But today I have a problem

[R-SIG-Mac] Minor bug in Quartz sizing

2011-09-03 Thread Duncan Murdoch
izing, repetitions in the old window are fine, but if I close it and try again, the error re-surfaces. I'm on Mac OSX 10.6.8. Duncan Murdoch ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] Minor bug in Quartz sizing

2011-09-03 Thread Duncan Murdoch
On 11-09-03 5:03 PM, Kasper Daniel Hansen wrote: On Sat, Sep 3, 2011 at 12:47 PM, Duncan Murdoch wrote: With a current R-patched (2.13.1 Patched (2011-09-02 r56906)), the following code generates plots missing the bottom labels: par(mfrow = c(4, 5), mar = c(2.1, 2.1, 4.1, 1.1)) for (i in 1

Re: [R-SIG-Mac] rgl on 10.7: has anyone tried it?

2011-10-11 Thread Duncan Murdoch
oaded depending on what it saw at package load time (I think rgl.* is for X11, aglrgl.* is for AGL). I haven't kept up with Apple's rearrangements, so I don't know what is currently needed, and am unlikely to have the time to figure it out. However, if someone who does know what

Re: [R-SIG-Mac] incomplete final line?

2011-11-01 Thread Duncan Murdoch
CR LF on Windows). Duncan Murdoch ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] incomplete final line?

2011-11-02 Thread Duncan Murdoch
there's a blank line in each file) I don't think R has changed. I've seen that message for a long time. But perhaps source() (or whatever method you used to read the file) has changed to start using readLines. Duncan Murdoch On 11/1/11 9:41 PM, Duncan Murdoch wrote: On 11-11-

Re: [R-SIG-Mac] finding things in R manuals

2012-02-03 Thread Duncan Murdoch
tainly write a function to pick one and open it, e.g. doc <- function(manual=file.choose()) { system(paste('open', manual)) } Duncan Murdoch Ruth On 03/02/2012 01:14, David Winsemius wrote: On Feb 2, 2012, at 2:37 PM, Ruth Ripley wrote: Dear list, Would it be possible to

[R-SIG-Mac] Fwd: Re: [R] Package seems to be present but library don't find it

2012-04-03 Thread Duncan Murdoch
vn/R-2-15-branch/library" "d:/temp/HelloWorld_1.0.tar.gz"' had status 1 2: In install.packages("d:/temp/HelloWorld_1.0.tar.gz", type = "source", : installation of package ‘d:/temp/HelloWorld_1.0.tar.gz’ had non-zero exit status Duncan Murdoch --

Re: [R-SIG-Mac] Fwd: Re: [R] Package seems to be present but library don't find it

2012-04-03 Thread Duncan Murdoch
On 03/04/2012 1:04 PM, Berend Hasselman wrote: On 03-04-2012, at 18:50, Duncan Murdoch wrote: > This is a message from R-help about installing a package in OSX. The NAMESPACE file contains an error, but the user didn't see the error message when he installed from the Mac GUI.

Re: [R-SIG-Mac] Fwd: Re: [R] Package seems to be present but library don't find it

2012-04-04 Thread Duncan Murdoch
On 12-04-03 3:29 PM, Simon Urbanek wrote: On Apr 3, 2012, at 3:09 PM, Berend Hasselman wrote: On 03-04-2012, at 20:54, Duncan Murdoch wrote: On 03/04/2012 1:04 PM, Berend Hasselman wrote: On 03-04-2012, at 18:50, Duncan Murdoch wrote: This is a message from R-help about installing a

Re: [R-SIG-Mac] Vignette package 'parallel'?

2012-04-15 Thread Duncan Murdoch
tte off-list, I just would like to know how I could get it via 'vignette(package="parallel")'. Do you have the vignttes from grid, or the one from utils? If not, you'll need to re-install R. (I just installed the binary R-2.15.0.pkg from CRAN, and didn't get tho

Re: [R-SIG-Mac] Vignette package 'parallel'?

2012-04-15 Thread Duncan Murdoch
On 12-04-15 12:14 PM, Marius Hofert wrote: Duncan Murdoch writes: On 12-04-15 3:34 AM, Marius Hofert wrote: Hi, I couldn't find the vignette for the package 'parallel' (Mac OS X 10.7.3; R 2.15.0). I then tried to (re)install the package (I know I comes with R native

Re: [R-SIG-Mac] Unexpected behavior from sprintf()

2012-04-24 Thread Duncan Murdoch
On 12-04-24 4:24 PM, Joran Elias wrote: I stumbled across this by accident from this StackOverflow question: http://stackoverflow.com/q/10300325/324364 and a subsequent discussion in the StackOverflow R chat room: http://chat.stackoverflow.com/transcript/message/3431991#3431991 The issue is t

Re: [R-SIG-Mac] Unexpected behavior from sprintf()

2012-04-24 Thread Duncan Murdoch
On 12-04-24 6:20 PM, David Winsemius wrote: On Apr 24, 2012, at 6:07 PM, Duncan Murdoch wrote: On 12-04-24 4:24 PM, Joran Elias wrote: I stumbled across this by accident from this StackOverflow question: http://stackoverflow.com/q/10300325/324364 and a subsequent discussion in the

Re: [R-SIG-Mac] Unexpected behavior from sprintf()

2012-04-24 Thread Duncan Murdoch
f a conversion spec, is the behaviour defined? For example, something taken from the R do_sprintf source in one of the error messages: "the '%*' constructed 'fmt2' exceeds maximum of %d" There's certainly one decimal value to be displayed at the end, but is

Re: [R-SIG-Mac] Unexpected behavior from sprintf()

2012-04-24 Thread Duncan Murdoch
On 12-04-24 10:33 PM, Simon Urbanek wrote: On Apr 24, 2012, at 9:12 PM, Duncan Murdoch wrote: On 12-04-24 5:12 PM, Simon Urbanek wrote: On Apr 24, 2012, at 4:24 PM, Joran Elias wrote: I stumbled across this by accident from this StackOverflow question: http://stackoverflow.com/q/10300325

[R-SIG-Mac] libiconv missing for R-devel build

2012-05-30 Thread Duncan Murdoch
... yes checking for iconv.h... yes checking for iconv... no checking for iconvlist... no checking for iconv... no, consider installing GNU libiconv Can anyone let me know if the advice to install libiconv is really correct, and if so, how to do that? I'm on OS X 10.6.8. Duncan Murdoch

Re: [R-SIG-Mac] libiconv missing for R-devel build

2012-05-30 Thread Duncan Murdoch
On 30/05/2012 1:29 PM, Simon Urbanek wrote: On May 30, 2012, at 12:54 PM, Duncan Murdoch wrote: > I haven't built R on Mac OS in a while, and now when I try the build fails with > > mkdir ../../../../library/tools/libs > dyld: lazy symbol binding failed: Symbol not foun

Re: [R-SIG-Mac] rgl broken with 2.15.1?

2012-07-12 Thread Duncan Murdoch
mand line version uses the X11 driver, and R.app 64 bit will fall back to that if aglrgl.so is not found. I don't know what's causing Michael's problem and doubt if the same workaround would help, but it probably wouldn't hurt. Duncan Murdoch On Jun 29, 2012, at 18:39 , M

Re: [R-SIG-Mac] rgl configure error: "missing required library GL"

2012-07-16 Thread Duncan Murdoch
e them and it's not finding them, you can give hints to the configure script; after unpacking the source, run ./configure --help to see what's possible. Duncan Murdoch I'm running R 2.15.0 on OSX 10.7.4. GCC is: i686-apple-darwin11-llvm-gcc-4.2 (GCC) 4.2.1 (Based on Apple Inc. bu

Re: [R-SIG-Mac] rgl configure error: "missing required library GL"

2012-07-17 Thread Duncan Murdoch
API change in recent OSX 64 bit, but maybe it's a problem with the makefiles or the compiler. If you can suggest any fixes for this, I'd appreciate it. (The newest OSX that I have is 10.6.8.) Duncan Murdoch $ find -name \*.o |xargs file rgl/src/ABCLineSet.o:Mach-O 64-bit ob

Re: [R-SIG-Mac] rgl configure error: "missing required library GL"

2012-07-17 Thread Duncan Murdoch
On 17/07/2012 2:33 PM, peter dalgaard wrote: On Jul 17, 2012, at 19:31 , Davor Cubranic wrote: > On 2012-07-17, at 10:05 AM, Duncan Murdoch wrote: > >> The aglrgl.so library is built from osxgui.mm and osxlib.cpp. I'd been assuming the problem was an API change in recent OSX

Re: [R-SIG-Mac] rgl configure error: "missing required library GL"

2012-07-23 Thread Duncan Murdoch
rgl.so library mentioned in the error message. rgl will fall back to the X11 library, which still works. Duncan Murdoch Mark Grimes > library (rgl) Error : .onLoad failed in loadNamespace() for 'rgl', details: call: dyn.load(file, DLLpath = DLLpath, ...) error:

Re: [R-SIG-Mac] rgl configure error: "missing required library GL"

2012-07-23 Thread Duncan Murdoch
On 23/07/2012 2:31 PM, peter dalgaard wrote: On Jul 23, 2012, at 19:13 , Duncan Murdoch wrote: > On 23/07/2012 12:55 PM, Grimes Mark wrote: >> I wonder if this is related. Package 'rgl' failed to load in an error >> similar to one I've had previously. It was wor

Re: [R-SIG-Mac] Building package using RTools in OS X

2012-09-14 Thread Duncan Murdoch
instructions on his website <http://r.research.att.com/>. You'll probably have to download the compiler suite, but you don't need everything else that's in Rtools, because OSX already has Unix tools. Duncan Murdoch ___ R-SIG-Mac mai

Re: [R-SIG-Mac] Contour lines not plotting in correct position

2012-10-25 Thread Duncan Murdoch
n error in the simple version, and won't need to post at all. And finally, as David said, this sort of question should go to R-help, not R-sig-mac, unless you think there's something Mac-specific about the problem. But posting a working example is much better than most "first posts"; thanks for doing that. Duncan Murdoch ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] What's up with RSwitch

2012-11-16 Thread Duncan Murdoch
a bad HD and lots of > link are dead -- it seems RSwitch is broken there. > > I zipped RSwitch.app and put it here: > http://cbio.mskcc.org/~lianos/files/bioc/RSwitch.app.zip > > So you can try that if you like -- I'm going to take that down by, > say, some time tomorrow, t

Re: [R-SIG-Mac] Saving or copying graphics from Quartz returns empty file

2013-01-29 Thread Duncan Murdoch
opy from a screen device to a print device, those choices may be different. Duncan Murdoch When I save a graphic, the process either crashes R, or if it saves a file, when I open it I get a blank file or an error message that reads "The file Rplot.pdf could not be opened." When I try

Re: [R-SIG-Mac] installing rgl with the 3.0 RC

2013-02-04 Thread Duncan Murdoch
On 13-02-04 9:06 PM, Bryan Hanson wrote: I don't think I've seen this reported yet (apologies if I missed it). The version on CRAN is out of date. You want to get the one from R-forge. Duncan Murdoch There has previously been a problem similar to this, which was fixed b

Re: [R-SIG-Mac] installing rgl with the 3.0 RC

2013-02-05 Thread Duncan Murdoch
an disable the Cocoa (native) support by configuring with the configure option install.packages("rgl", ..., configure.args="--disable-cocoa") and then you should be able to get the install to complete, but it might be better to figure out

Re: [R-SIG-Mac] installing rgl with the 3.0 RC

2013-02-05 Thread Duncan Murdoch
On 05/02/2013 10:46 AM, Prof Brian Ripley wrote: On 05/02/2013 13:25, Duncan Murdoch wrote: > On 13-02-05 8:07 AM, Bryan Hanson wrote: >> Thanks for taking the time to look at this carefully Duncan. I don't >> see the warning you mention, and I don't see the strin

Re: [R-SIG-Mac] installing rgl with the 3.0 RC

2013-02-05 Thread Duncan Murdoch
u shouldn't need the --disable-cocoa any more, but you will still need to match 32 vs 64 bits. Duncan Murdoch On Feb 5, 2013, at 11:01 AM, Prof Brian Ripley wrote: > On 05/02/2013 15:56, Bryan Hanson wrote: >> Is that something I can control? I've never had to worry about th

Re: [R-SIG-Mac] R 3.0, lme4, and the oft unloved Mac OS

2013-04-10 Thread Duncan Murdoch
#x27;) sorts of procedures? I tried things like lme4.test() et alia... See ?tools::testInstalledPackage. You can do better tests on a tarball because some test material is not installed by default. And you can find things like this from the R command prompt by ??tests, or using the sos package

Re: [R-SIG-Mac] rgl crashes after one successful draw on R.app

2013-05-29 Thread Duncan Murdoch
to track down. Can anyone reproduce it while running in gdb or some other debugger? Duncan Murdoch library("rgl") showSomething <- function() { open3d() points3d(rnorm(10),rnorm(10),rnorm(10)) axes3d() title3d('main','sub',&#

[R-SIG-Mac] Bug in data editor

2013-09-28 Thread Duncan Murdoch
s base Duncan Murdoch ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] Compile errors on .tex file at \begin{Soutput} points

2013-10-20 Thread Duncan Murdoch
he problem. 2. Search for the string "darkred" in every file on your disk, and see which ones might be relevant. Duncan Murdoch ? [1] ! LaTeX Error: Undefined color `darkred'. I can not figure out where Latex is thinking there is a darkred colour associated with the followin

Re: [R-SIG-Mac] error with RMySQL

2014-01-27 Thread Duncan Murdoch
le, it probably has values stored in a Latin1 (or other non-UTF-8) encoding, and that's messing things up. But without a reproducible example, it's hard to guess... Duncan Murdoch ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] problem with plot math

2014-01-29 Thread Duncan Murdoch
e. a bit more than 5 lines at the bottom, 4 on the left and top, and 2 on the right. Duncan Murdoch Thank you On 29 Jan 2014, at 11:52, Ingmar Visser wrote: Your first example works for me with nice labels including "x bar" etc, using this configuration: sessionInfo() R versi

Re: [R-SIG-Mac] R stops abruptly applying textures in rgl

2014-03-19 Thread Duncan Murdoch
2066/theme/splash.png' for reading This looks like an rgl bug on the Mac. I'll take a look. Duncan Murdoch ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] R stops abruptly applying textures in rgl

2014-03-20 Thread Duncan Murdoch
2066/theme/splash.png' for reading I am unable to reproduce this. Could you please post a complete script that reproducibly causes the crash for you, and post information about rgl, R, and MacOS versions? Duncan Murdoch ___ R-SIG-Mac mailing l

Re: [R-SIG-Mac] R stops abruptly applying textures in rgl

2014-03-20 Thread Duncan Murdoch
mething goes wrong, and it doesn't end up being handled properly by R.app. (I would guess a workaround is to call normalizePath() to expand the tilde; rgl should probably be doing that, but currently doesn't.) I'll see if the extra info lets me reproduce it. Duncan Murdoch `

Re: [R-SIG-Mac] Unexpected behavior of R round function on Mac

2014-04-11 Thread Duncan Murdoch
this could cause other problems. Duncan Murdoch On 11 Apr 2014, at 10:42 , Per Nielsen wrote: Hi all I have encountered some strange/wrong behavior of the round function in R. This is the behavior on my mac laptop: R.version _ platform x86_64-apple-darwin1

Re: [R-SIG-Mac] [Rd] R 3.1.0: 'R CMD Sweave' deletes non tex files created upon batch mode exit

2014-04-15 Thread Duncan Murdoch
pre-release versions. Duncan Murdoch Thanks again. Regards, Marc On Apr 14, 2014, at 7:28 AM, Martin Maechler wrote: Marc Schwartz on Sun, 13 Apr 2014 10:22:55 -0500 writes: [on the R-SIG-Mac mailing list] : Hi all, With R version 3.1.0 on OSX, using either the Snow

[R-SIG-Mac] Compling rgl for Mavericks

2014-04-26 Thread Duncan Murdoch
there one available in the standard collection, or online somewhere? Duncan Murdoch ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] package.skeleton

2014-06-15 Thread Duncan Murdoch
ar/qstar) * q > kc = (m * kjam - q)/m > if (x == 1) > k = kc > else k = kf > return(k) > } > >> K(3.2,1) > [1] 0.4207143 In this case it worked, because q was 3.2. Duncan Murdoch > > As I was developing the script, I found that I ne

Re: [R-SIG-Mac] rgl for R-devel

2014-07-18 Thread Duncan Murdoch
GLKit.framework but there is no Headers subdir ... > What OSX version is that? There were warnings about deprecated code in rgl, so I switched to using GLKMathUtils, but apparently the configure script isn't quite right. Duncan Murdoch ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] rgl for R-devel

2014-07-19 Thread Duncan Murdoch
(); [super dealloc]; } but as far as I can tell this isn't being called when the user closes the window. Is there some other method that is called to allow cleanup? The Apple docs probably talk about this somewhere, but I haven't found where... Duncan Murdoch > > @Roger:

Re: [R-SIG-Mac] rgl for R-devel

2014-07-19 Thread Duncan Murdoch
On 19/07/2014, 4:42 AM, Duncan Murdoch wrote: > On 18/07/2014, 8:18 PM, Simon Urbanek wrote: >> Duncan, >> >> I didn't look at the code, but the approach seems strange - if you use >> something from the GLKit framework then the include should be >> >>

Re: [R-SIG-Mac] rgl for R-devel

2014-07-19 Thread Duncan Murdoch
27;t include a bug fix for the dealloc bug I mentioned in another email, so I don't recommend using this version: but I'd appreciate hearing if it fixes your problem. Duncan Murdoch > > Roger Koenker > rkoen...@illinois.edu > > > > > On Jul 18, 2014, at 8:

Re: [R-SIG-Mac] rgl for R-devel

2014-07-19 Thread Duncan Murdoch
On 19/07/2014, 10:31 AM, Simon Urbanek wrote: > > On Jul 19, 2014, at 6:05 AM, Duncan Murdoch wrote: > >> On 19/07/2014, 4:42 AM, Duncan Murdoch wrote: >>> On 18/07/2014, 8:18 PM, Simon Urbanek wrote: >>>> Duncan, >>>> >>>> I didn

[R-SIG-Mac] Threads in R.app?

2014-07-23 Thread Duncan Murdoch
n the expected order. Is this the case? Is there any way I can force the rgl window to have its messages received in the same thread? Duncan Murdoch ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] Threads in R.app?

2014-07-23 Thread Duncan Murdoch
On 23/07/2014, 4:10 PM, Simon Urbanek wrote: > On Jul 23, 2014, at 11:46 AM, Duncan Murdoch wrote: > >> As I've mentioned before, I'm seeing crashes in rgl when running in R.app. >> I'm starting to wonder if the Cocoa messages that my window receives are >

Re: [R-SIG-Mac] Difference between Terminal output and GUI output.

2014-07-27 Thread Duncan Murdoch
- XX[10, , i])^2))^0.5 + > (sum((XX[2, >, i] - XX[10, , i])^2))^0.5)/2, 3) > Browse[2]> etc. That's not normal output. It's hard to guess exactly what's going wrong, but perhaps you have set a hook somewhere (see ?getHook), or have an option set that is not obvious,

[R-SIG-Mac] Help with windowWillClose notification

2014-08-21 Thread Duncan Murdoch
ng the second window open and only dying when I close it. Does anyone know of any other examples of R packages that open Cocoa windows, so I could see how they do their cleanup? Or would anyone like to volunteer to look at the code and tell me what I'm doing wrong? Duncan Murdoch ___

[R-SIG-Mac] Bug in R.app code editor

2014-08-30 Thread Duncan Murdoch
ng by selecting a point in the top left cell and dragging over the whole table, then Apple-C. Back in R.app, open a new document to edit, and paste the text. This causes a crash with error report as shown below. I haven't tried a nightly build; I don't have a lot of connectivity right now.

[R-SIG-Mac] Clipboard problems

2014-09-03 Thread Duncan Murdoch
line 1 line 2 line 3 so the problem isn't (only) with pbpaste. Duncan Murdoch ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] Help with windowWillClose notification

2014-09-04 Thread Duncan Murdoch
To add my GLView object as a delegate to receive that notification, I needed to declare that it supported the NSWindowDelegate protocol when it was declared, and needed to tell the window to use it as a delegate via [osxWindow setDelegate:view]. Duncan Murdoch On 21/08/2014, 8:03 AM, Duncan Mur

Re: [R-SIG-Mac] sh: convert: command not found

2014-10-24 Thread Duncan Murdoch
from a GUI > application. You will see if you run > system("echo $PATH") > > You have to use full paths in Yosemite for anything that is not on the > "sanctioned" PATH -- or use R from the shell. What is the best way to find the full path to a command there, since

Re: [R-SIG-Mac] sh: convert: command not found

2014-10-25 Thread Duncan Murdoch
On 24/10/2014, 9:03 AM, Simon Urbanek wrote: > >> On Oct 24, 2014, at 7:36 AM, peter dalgaard wrote: >> >> >> On 24 Oct 2014, at 12:55 , Duncan Murdoch wrote: >> >>> On 24/10/2014, 1:37 AM, Simon Urbanek wrote: >>>> >>>> On Oct

Re: [R-SIG-Mac] How to choose between the CRAN release of OSX R vs the Brew release?

2014-11-12 Thread Duncan Murdoch
On 12/11/2014 11:44 AM, Vincent Goulet wrote: I'm pretty sure that the advice you will mostly find here is to use the CRAN release. This is certainly the version that is supported. Yes, most people like to use a version that doesn't crash. Duncan Murdoch v. > Le 2014-11-12 à

Re: [R-SIG-Mac] "I running Rstudio, using Mac os but in virtual Parallel Windows"

2015-01-08 Thread Duncan Murdoch
n D:/ or some other drive. You can also use RStudio natively on the Mac. Duncan Murdoch ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] R Versioning and Packages

2015-04-17 Thread Duncan Murdoch
ge to doing this is that you will go to the latest version of all packages, and you might have been postponing that due to incompatible changes. Duncan Murdoch ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] problem with character encoding in file names in R 3.2

2015-05-03 Thread Duncan Murdoch
how it fails? I am sure that having save() call paste() will not result in any difference from just calling paste() on its own, and likewise manually typing the full string should produce the same result as constructing it via paste(). (But I am not sure that paste() is producing what you want.) T

Re: [R-SIG-Mac] problem with character encoding in file names in R 3.2

2015-05-03 Thread Duncan Murdoch
owing script, I also > create a second folder with accents, as you suggested. Thanks, I'll see if I can reproduce this. Duncan Murdoch > ## > dir.create("bébé") # folder created within working directory > # in addition, 2 folders already exist in this working dire

[R-SIG-Mac] Bug related to locale changes.

2015-06-08 Thread Duncan Murdoch
quot;320" > "300" [1] NA > "320" > "300" [1] TRUE The first string comparison after the locale change produces NA, while later ones are fine. The locale string "en_CA" doesn't appear to matter, as long as it is different from my prev

Re: [R-SIG-Mac] Bug related to locale changes.

2015-06-08 Thread Duncan Murdoch
>> "320" > "300" > [1] TRUE >> "320" > "300" > [1] TRUE > > There is probably an associated error. I'll have a look later today unless > someone beats me to it. I think I've got it, and should be able to commit

Re: [R-SIG-Mac] Bug related to locale changes.

2015-06-08 Thread Duncan Murdoch
On 08/06/2015 8:37 AM, Berend Hasselman wrote: > >> On 08-06-2015, at 13:40, Duncan Murdoch wrote: >> >> I posted this to R-devel yesterday; from responses received, it appears >> to be OSX-specific (maybe Mavericks-specific). >> >> In an R session starte

Re: [R-SIG-Mac] Bug related to locale changes.

2015-06-08 Thread Duncan Murdoch
On 08/06/2015 9:18 AM, Duncan Murdoch wrote: > On 08/06/2015 8:55 AM, Simon Urbanek wrote: >> Interesting - it seems to fail only the first time after the locale is set: >> >>> Sys.setlocale(locale="en_CA") >> [1] "en_CA/en_CA/en_CA/C/en_CA/en_US.UTF-8&

Re: [R-SIG-Mac] Bug related to locale changes.

2015-06-08 Thread Duncan Murdoch
it was related. Earlier today I found the same > pattern with respect to the xtable package. > > I apologize for not being in a position to do this test myself, but I'm > not set up to readily build R from source on the Mac. There should be nightly builds available tomorrow. Duncan Murdoch ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] Unexpected output from round()

2015-06-12 Thread Duncan Murdoch
On 12/06/2015 8:53 PM, John Maindonald wrote: > I cannot reproduce it (R version 3.2.0 Patched (2015-04-19 r68206)) in a > terminal window: If you set options(digits=16) you'll get it. It's just FAQ 7.31, and the fact that R only stores 15 or 16 digit accuracy. Duncan Murdoc

Re: [R-SIG-Mac] Option '--no-save' seems to be ignored although in .bash_profile and other files

2015-10-07 Thread Duncan Murdoch
ow you are starting R. Assuming you are doing it by running the command "R" from within bash, what does "alias R" show you? Duncan Murdoch ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] sort() under terminal

2015-10-12 Thread Duncan Murdoch
in13.4.0 > status > major 3 > minor 2.2 > year 2015 > month 08 > day14 > svn rev69053 > language R > version.string R version 3.2.2 (2015-08-14) > nickname Fire Safety > > > Could anyone poin

Re: [R-SIG-Mac] rgl crashes R.app in El Capitan

2015-10-13 Thread Duncan Murdoch
'm still running under OS X 10.9.5 (Mavericks), and it doesn't crash. Since you're using the latest rgl, you must have built it yourself -- CRAN doesn't distribute binaries for it (at least for Mavericks). Did you get any errors or warnings during compilation? Duncan Murdoch ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] rgl crashes R.app in El Capitan

2015-10-15 Thread Duncan Murdoch
ot;rgl")) to fail because of permission problems, but I'm not sure of that. I'm not going to attempt to describe Xquartz installation, but Google should be able to help. Duncan Murdoch On 13/10/2015 4:05 PM, Fox, John wrote: > Dear Duncan, > >> -Original Message-

Re: [R-SIG-Mac] rgl crashes R.app in El Capitan

2015-10-15 Thread Duncan Murdoch
On 15/10/2015 2:21 PM, Fox, John wrote: Hi Duncan, Thanks for looking into this. Please see below: > -Original Message- > From: Duncan Murdoch [mailto:murdoch.dun...@gmail.com] > Sent: Thursday, October 15, 2015 12:29 PM > To: Fox, John; r-sig-mac@r-project.org &g

Re: [R-SIG-Mac] (old) rgl package crashes MacGUI using R 3.2.3 in El Cap, new compiled one does not.

2015-12-31 Thread Duncan Murdoch
. I don't think the type sloppiness could be a cause of the error (I think it would fail for all servers if so), and I can't spot the run-time sloppiness. Duncan Murdoch ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/ma

Re: [R-SIG-Mac] (old) rgl package crashes MacGUI using R 3.2.3 in El Cap, new compiled one does not.

2015-12-31 Thread Duncan Murdoch
On 31/12/2015 1:06 PM, David Winsemius wrote: On Dec 31, 2015, at 3:43 AM, Duncan Murdoch wrote: On 30/12/2015 9:40 PM, David Winsemius wrote: [lots deleted] So I guess the question is ... why is the build process for the Mavericks/Yosemite/El Capitan machines still failing to produce a

Re: [R-SIG-Mac] (old) rgl package crashes MacGUI using R 3.2.3 in El Cap, new compiled one does not.

2016-01-01 Thread Duncan Murdoch
On 31/12/2015 6:43 AM, Duncan Murdoch wrote: On 30/12/2015 9:40 PM, David Winsemius wrote: [lots deleted] So I guess the question is ... why is the build process for the Mavericks/Yosemite/El Capitan machines still failing to produce a current (working) version of rgl? I think it does

Re: [R-SIG-Mac] (old) rgl package crashes MacGUI using R 3.2.3 in El Cap, new compiled one does not. (Duncan Murdoch)

2016-01-02 Thread Duncan Murdoch
Please use -magnification. I don't think this is present in the current rgl. I don't remember if it was there in earlier versions, but your verbose error message doesn't show any rgl activity as far as I can see. Duncan Murdoch Verbose error 2 in MacGUI window: 2016-01-01 2

Re: [R-SIG-Mac] (old) rgl package crashes MacGUI using R 3.2.3 in El Cap, new compiled one does not. (Duncan Murdoch)

2016-01-02 Thread Duncan Murdoch
hp/pkg/rgl/inst/NEWS?view=markup&root=rgl (This goes a little newer than the CRAN version.) Duncan Murdoch Thanks for the quick view of the error codes. Joe Kunkel On Jan 2, 2016, at 11:47 AM, Duncan Murdoch wrote: On 02/01/2016 10:23 AM, Joseph Kunkel wrote: What is the recom

Re: [R-SIG-Mac] (old) rgl package crashes MacGUI using R 3.2.3 in El Cap, new compiled one does not. (Duncan Murdoch)

2016-01-02 Thread Duncan Murdoch
On 02/01/2016 5:47 PM, David Winsemius wrote: On Jan 2, 2016, at 10:34 AM, Duncan Murdoch wrote: On 02/01/2016 12:47 PM, Joseph Kunkel wrote: Duncan, The rgl (binary) download says it, ver 0.95.1201, is as up to date as binaries are for my MacBook Pro retina early 2013 with OS X El Capitan

Re: [R-SIG-Mac] glmnet install error R-devel 3.3, Mac OS 10.11.3

2016-01-25 Thread Duncan Murdoch
ld use the compilers that Simon has put together. I think his newest is gfortran 4.8.2, not 5.2.0, but I'm having trouble finding the download page now... Duncan Murdoch Details below - any advice would be much appreciated. Many thanks Davis After calling "install.packages("

Re: [R-SIG-Mac] R crashes when using edit() or fix()

2016-01-26 Thread Duncan Murdoch
ts or theories; David. No insight or theories, but the website works for me, and the bug in editing a dataframe is fixed. Duncan Murdoch > > Cheers, > Simon > > >> On Jan 26, 2016, at 1:30 PM, Kamila Naxerova wrote: >> >> Dear list, >> >> For quite

Re: [R-SIG-Mac] R stats: not recognising 'F' as 'FALSE'

2016-02-11 Thread Duncan Murdoch
at you never use F when you want FALSE. Duncan Murdoch ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] R GUI is freezing

2016-02-11 Thread Duncan Murdoch
Have you tried recent nightly builds from http://r.research.att.com/? Some bugs with the data editor were recently fixed; I think those were specific to it, but maybe more got fixed at the same time. Duncan Murdoch On 11/02/2016 10:07 AM, Chris Swan wrote: No - never got a solution

Re: [R-SIG-Mac] R GUI is freezing

2016-02-11 Thread Duncan Murdoch
dvice you quote above, and you didn't follow it. Duncan Murdoch ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] R GUI is freezing

2016-02-13 Thread Duncan Murdoch
le example, and post that here. Duncan Murdoch On Duncans advice (Feb 11, 2 days ago) I tried the suggested nightly build and then ran one of my R scripts from the initial directory I had set in the R-gui preferences menu R-startup menu which was still the default det from the previ

Re: [R-SIG-Mac] R GUI is freezing

2016-02-18 Thread Duncan Murdoch
a version label on R, not R.app), on what version of Mac OS X, or what is necessary to duplicate the problem, we're unlikely to even try to fix it. Duncan Murdoch Cheers, V ____ From: R-SIG-Mac on behalf of Duncan Murdoch Sent: Saturday, February 13, 20

Re: [R-SIG-Mac] R GUI is freezing

2016-02-18 Thread Duncan Murdoch
On 18/02/2016 3:02 PM, peter dalgaard wrote: On 18 Feb 2016, at 20:45 , Duncan Murdoch wrote: You need to give version numbers, and an exact sequence of operations to reproduce the crash. Then it'll likely be fixed. ...if we can reproduce it on one of our machines! There have b

Re: [R-SIG-Mac] Startup problem with manipulate

2016-02-23 Thread Duncan Murdoch
On 23/02/2016 3:50 PM, Iryna Nikolayeva wrote: Hi all, every time I start up Studio, I get the following error message: This is an RStudio problem, so you may have to work with them to solve it. But I'd suggest updating R (the current version is 3.2.3), which may help. Duncan Mu

Re: [R-SIG-Mac] R vs. Microsoft R-Open updates?

2016-06-29 Thread Duncan Murdoch
On 29/06/2016 11:56 AM, c...@witthoft.com wrote: I posted to the Microsoft forums, and got this reply from David Smith, one of the biggies over at RStudio: No, David isn't at RStudio. He was at Revolution, but it was bought (assimilated?) by Microsoft, so he's there now. Dunc

Re: [R-SIG-Mac] download R 3.2.1 on mac OS

2016-08-26 Thread Duncan Murdoch
, you're probably using RStudio, which doesn't display download.file output properly. In other front ends this would appear as a progress report. Duncan Murdoch , also I tried fileUrl<- "https://data.baltimorecity.gov/api/views/dz54-2aru/rows.csv?accessType=DOWNLOAD"

Re: [R-SIG-Mac] Problem using the R.app GUI Package Installer

2016-09-28 Thread Duncan Murdoch
r you: I can get the URL to open. But in general, to change the default mirror in R.app, run chooseCRANmirror() in the console. I forget whether that changes it for the session or permanently. Duncan Murdoch ___ R-SIG-Mac mailing list R-SIG-Mac@

Re: [R-SIG-Mac] cannot change the default language environment

2017-01-04 Thread Duncan Murdoch
incorrect. Has it changed? And should I be worried about the earlier “failed” messages? That's a command to execute in the Terminal, not in R. Duncan Murdoch Sorry if this question has been asked many times, but I wasn’t able to find an archive of the list. Thank you for any help, Rick _

Re: [R-SIG-Mac] ggviz stats?

2017-01-09 Thread Duncan Murdoch
;s available for a simple install on my Mac, so I'd suspect you're using an old version of Mac OS for which packages aren't being built, or a CRAN mirror that's not up to date. Duncan Murdoch ___ R-SIG-Mac mailing list R-SIG-M

Re: [R-SIG-Mac] ggviz stats?

2017-01-12 Thread Duncan Murdoch
looks like you had a typo in the name. Duncan Murdoch phil On 1/9/17 8:09 AM, Duncan Murdoch wrote: On 13/12/2016 7:59 PM, Philip Cannata wrote: What's the status of ggviz, I've tried installing it on my Mac, however, I get the following: install.packages("ggvi

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