Re: Great biological mystery force Re: [Vo]:GATC and ESP

2009-06-01 Thread thomas malloy

Rhong Dhong wrote:


--- On Sun, 5/31/09, William Beaty bi...@eskimo.com wrote:
 


Good one!  Floating proteins come wiggling in from
afar and find their
   



I have had the pop-science idea that the reason the proteins, and other bits and pieces, found their mates, and found them so quickly, was that at their scales, just randomly 
 

I'm a big fan of energy medicine, which a form of energy some times 
called scalar or nonorthogonal. I assume that the target is emiting a 
form of which attracts the requisite pieces, or perhaps vice versa.



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Re: Great biological mystery force Re: [Vo]:GATC and ESP

2009-05-31 Thread leaking pen
well, that wont put me into sleep dep.   I go into rem about 4 minutes
after falling asleep.  i actually sleep BETTER in 1 hour cat naps.
(And ive just found, thats a main symptom of narcolepsy.  explains a
lot actually)

Something to remember. electrons don't actaully orbit the nucleus.
they bounce around randomly, perhaps actually appearing and
dissapearing, or, tunneling, within vague cloud like areas known as
orbitals (because of the old Neils Bohr orbital model of the atom. )

These orbitals are actually what cause the transmission spectrums, the
transmission spectra is based on an electron absorbing energy,
temporarily getting a boost up to a higher orbital, then dropping back
down in rank to where it was before. releasing a photon that is the
exact energy, and thus frequency (and thus color) of the amount of
energy difference between the two states. This is why each atom has a
pretty unique spectrum, its based in large part on the top filled
orbitals.


When electrons are shared in a chemical bond, they bounce back and
forth between the filled orbitals of the paired atoms, spending
weekends with daddy and weeks with mommy (mommy being the most
electronegative of the pair, if they arent the same atom)  Now, this
fact, based on the distances involved in chemical bonds, means that
the electrons are jumping at least the actual radius of the atom more
than they were before. And, i recall a video i saw in chemistry long
ago that showed mapping of this electron motion.  Basically, it showed
the general shape of an orbital , the p orbital as i recall, formed by
mapping the position of the electron as it moved.  there were several
outliers, like, edge of the screen dots.  I asked my prof at the time
if that meant the electron was now and then bouncing way outside of
the orbital.  His statement, i don't think so, i think its just noise,
but it might be.  (Favorite chem teacher ever.  Was not afraid to say,
I don't know. )

might that form of electron tunneling be your radio signal?  jumping
to orbitals that are the exact same energy, because its the same
element at the same energy state?

Alex


On Sat, May 30, 2009 at 4:03 PM, William Beaty bi...@eskimo.com wrote:
 On Sat, 30 May 2009, leaking pen wrote:

 Im now imagining a rick moranis ribosome wandering around the cell,
 are you the gatekeeper?  I am the keymaster.

 Give Moranis a radio direction finder, and it all becomes easy!

 Actually, my previous message was a lead-in to one of my old rants,
 http://amasci.com/tesla/biores.html

 Years ago I suffered a 'visionary experience,' and gained insights into
 all sorts of weird topics, plus much delusional crap which doesn't work
 when tested.  Among it all was a tidbit:  the idea that anomalous
 biological forces exist, forces which act like radio transmitters and
 receivers, with key-codes to allow biomolecules to be attracted together
 over many nanometers distance.  At the time I was mostly unaware of the
 unsolved problem in biology, but I'd had suspicions.

 Heres the quick description:

  - Even though electrons orbiting atoms don't radiate photons, they
   do create an extremely intense AC field in the nearfield region
   surrounding the atom.   It's related to AC Casmir forces.

 Physicists would see this as QM, as a field of virtual photons at the
 frequency of the atom's absorption line, an AC field of indeterminate
 phase, oriented along an indeterminate axis.  Electrical engineers would
 imagine that every atom is a tiny AC electromagnet driven by a sinewave
 source.  The atom's local field is AC, so there's no average force being
 applied to nearby matter.  And atoms don't radiate continuously (i.e.
 there's no loss mechanism.)  So, if an electron's period is in the
 infrared frequencies, the atom will have an AC field which extends outward
 to 1/4 infrared wavelength (or hundreds of nanometers.)

 So atoms are different than we believe.  They're much larger.   But only
 identical atoms could feel this large size.

 Example: sodium atoms possess an intense AC field at the sodium line
 frequency, and if two sodium atoms are ultra-cold and not moving fast with
 Doppler shift, the oscillations are identical for both atoms,
 synchronized.  They act like bar magnets attracting each other.  But these
 are AC electromagnets. They only see other sodiums, and won't respond to
 other atoms having a different frequency.  But what if two sodium atoms
 happen to be out of phase?  Even if they have identical frequency, might
 they not repel instead of attracting?  Well, that's the same problem as
 two magnets having their poles out of orientation.  Like two magnets
 they'd experience repulsion, a torque, then they'd flip themselves around,
 attract, and slam together.  (Atoms could only slam together if ultra-cold
 and not being jostled thermally.)

  - Molecules: Two atoms with identical frequencies, if bound together
   into a molecule, will create a line split frequency, a double-hump
   spectrum 

Re: Great biological mystery force Re: [Vo]:GATC and ESP

2009-05-31 Thread William Beaty
On Sat, 30 May 2009, leaking pen wrote:

 well, that wont put me into sleep dep.   I go into rem about 4 minutes
 after falling asleep.  i actually sleep BETTER in 1 hour cat naps.
 (And ive just found, thats a main symptom of narcolepsy.  explains a
 lot actually)

People in the uberman/polyphasic sleep community think it's a learnable
behavior.  Perhaps it helps to start out with unusual brain chemistry!
But at least in my own case, my creative insanity switches on only when I
carefully avoid processed food (normal american chow).  Heh: and then I
start getting city parking spaces at the Jedi Master level of anomalous
luck.

 Something to remember. electrons don't actaully orbit the nucleus.

Yep, that's the visualizable grade-school diagram.  (Or the diagram of
Rydberg atoms in the process of decay.)

How can we explain the nature of EM fields in the nearfield region of a
very small, sharply tuned RLC resonator? Say that it's being driven by the
Casmir background, and so cannot radiate.  But that doesn't mean it lacks
strong fields in the nearfield region.

The danger is that we'd note the lack of real photons being emitted by an
atom's electron cloud, conclude that no AC fields exist in the nearfield
region, therefore assume no significant EM interactions exist between two
distant atoms.  But transformers and capacitors are fundamentally
different than pairs of distant radio antennas, and they work fine at
frequencies with waves too long to radiate.  The lack of light photons
does not imply a lack of strong coupling between two nearby coils.
(Transformers and capacitors function entirely by tunneling photons, of
course.)

 These orbitals are actually what cause the transmission spectrums, the
 transmission spectra is based on an electron absorbing energy,

If I try to boil down all the weird ideas that popped into my head, then
here's the real question:  do atoms experience significant Vanderwaals
forces with nearby atoms of the same species, but not with atoms of
different species?  (Nearby, as in 50 nanometers, not molecular bond
lengths.)

The only experiments I've encountered are the very recent ones involving
an AFM tip separated from a surface by many nanometers.  The tip
experiences a large unexplained friction, but only if the tip carries a
tiny crystal of the same material of which the nearby surface is composed.
In other words, an atom isn't attracted to a similar surface, but instead
it causes the surface atoms to emit phonons into the crystal lattice
whenever the single atom tries to move nearby.  The single atom behaves as
if it's trapped in electromagnetic flypaper.  And the single atom is far
far outside the atomic diameters of the surface atoms.

Knowing that there's something weird going on in the tens-nM atomic
region, I'd been waiting for such an experiment to crop up.  I saw that QM
is still incomplete, because people think that atoms are fundamentally
different than tiny metal antennas.  On the other hand, this topic isn't
outside of physics.  Instead it's filed under VanderWaals interaction,
little understood, little studied, and not given high importance.

You can look up VanderWaals explanations and find they cover some of what
I'm talking about:  an atom's electron cloud undergoes a QM noise
fluctuation, creating non-uniform charge distribution, creating a huge EM
field which can affect distant atoms by provoking a similar fluctuation

But what if the two atoms are of the same element?  Then they contain
matched resonators, and the energy being borrowed from the virtual sea may
be larger than when it's frequency is far from an absorption/emission
line.


 might that form of electron tunneling be your radio signal?  jumping
 to orbitals that are the exact same energy, because its the same
 element at the same energy state?

Definitely.  It's nonradiative, brief, virtual-existing tunneling events.
The atom constantly emits a line spectrum but absorbs it simultaneously,
so no real photons escape.  No light, but only the coil/capacitor fields
of macroscopic components in oscillation.

Or here's another way to say it:  a lone electron is surrounded by an
intense field of virtual photons, same as a lone proton.  Let them combine
to form a hydrogen atom, and what happens to this photon population? The
textbooks I've encountered don't discuss it.  Are they assuming that,
since the ground state orbital has a spherical shape, therefore any EM
field must be radial and entirely contained inside the orbital?  Well,
what happens if experiments show otherwise.  And also, what happens if
another hydrogen atom is passing by at 30nM distance?




(( ( (  (   ((O))   )  ) ) )))
William J. BeatySCIENCE HOBBYIST website
billb at amasci com http://amasci.com
EE/programmer/sci-exhibits   amateur science, hobby projects, sci fair
Seattle, WA  206-762-3818unusual phenomena, tesla coils, weird sci



Re: Great biological mystery force Re: [Vo]:GATC and ESP

2009-05-31 Thread thomas malloy

leaking pen wrote:

Something to remember. electrons don't actually orbit the nucleus.
they bounce around randomly, perhaps actually appearing and
dissapearing, or, tunneling, within vague cloud like areas known as
orbitals (because of the old Neils Bohr orbital model of the atom. )

Perhaps the nucleus is a toroid and the electrons go through the hole in the center. 




When electrons are shared in a chemical bond, they bounce back and
forth between the filled orbitals of the paired atoms, spending
weekends with daddy and weeks with mommy (mommy being the most
electronegative of the pair, if they arent the same atom)  Now, this
fact, based on the distances involved in chemical bonds, means that

 


what a classic Generation X analogy!


but it might be.  (Favorite chem teacher ever.  Was not afraid to say,
I don't know. )
 


wonderful teacher


might that form of electron tunneling be your radio signal?  jumping
to orbitals that are the exact same energy, because its the same
element at the same energy state?
 


Why not, radio waves are electromagnetic radiation, ditto for light. .


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Re: Great biological mystery force Re: [Vo]:GATC and ESP

2009-05-31 Thread leaking pen
On Sun, May 31, 2009 at 2:10 AM, William Beaty bi...@eskimo.com wrote:
 On Sat, 30 May 2009, leaking pen wrote:



 People in the uberman/polyphasic sleep community think it's a learnable
 behavior.  Perhaps it helps to start out with unusual brain chemistry!
 But at least in my own case, my creative insanity switches on only when I
 carefully avoid processed food (normal american chow).  Heh: and then I
 start getting city parking spaces at the Jedi Master level of anomalous
 luck.

Really?  I should look them up.  If its causing my blood sugar issues
and falling asleep at work, id almost be willing to do something to
change the  no no i wouldnt.  I LOVE being able to take a 5 minute
nap and have a 15 minute subjective time frame dream.

To digress just a little, I discovered your essays on the wave nature
of traffic about a month before getting my license (got it at 22.
Just didn't need one sooner, i took the bus everywhere. ) and had a
massive impact on my driving style.  Without speeding, i always get
places before friends that speed becuase , Being unworried, relaxed,
letting the road itself dictate things, i get openings when i need
them to change lanes just appearing before me, my lights are always
green, and people pull out of parking spots right in front of me the
moment i enter the lot.  Friends of mine riding with me are mystified
and amazed. And i find that if im running late, in a rush, harried,
angry, wanting everything to move faster.   I get screwed with red
lights, walls of cars, and no spots to park.
I actually bought a website, churchoftheroad, to do a little something
about that kind of thing, but, alas, still is a blank page.  But i
digress..
 Something to remember. electrons don't actaully orbit the nucleus.

 Yep, that's the visualizable grade-school diagram.  (Or the diagram of
 Rydberg atoms in the process of decay.)

 How can we explain the nature of EM fields in the nearfield region of a
 very small, sharply tuned RLC resonator? Say that it's being driven by the
 Casmir background, and so cannot radiate.  But that doesn't mean it lacks
 strong fields in the nearfield region.

 The danger is that we'd note the lack of real photons being emitted by an
 atom's electron cloud, conclude that no AC fields exist in the nearfield
 region, therefore assume no significant EM interactions exist between two
 distant atoms.  But transformers and capacitors are fundamentally
 different than pairs of distant radio antennas, and they work fine at
 frequencies with waves too long to radiate.  The lack of light photons
 does not imply a lack of strong coupling between two nearby coils.
 (Transformers and capacitors function entirely by tunneling photons, of
 course.)

 These orbitals are actually what cause the transmission spectrums, the
 transmission spectra is based on an electron absorbing energy,

 If I try to boil down all the weird ideas that popped into my head, then
 here's the real question:  do atoms experience significant Vanderwaals
 forces with nearby atoms of the same species, but not with atoms of
 different species?  (Nearby, as in 50 nanometers, not molecular bond
 lengths.)
Well, vanderwall includes so called London Forces, yes?  I was under
the impression that those occured between dissimilar atoms, for
example, the london forces in water that cause its high viscosity and
surface tension occure between O in one atom and H in another.

But then, there are many forces included as vanderwall, yes?  Is there
a particular one you are thinking of that I could hunt down and look
more at?


 The only experiments I've encountered are the very recent ones involving
 an AFM tip separated from a surface by many nanometers.  The tip
 experiences a large unexplained friction, but only if the tip carries a
 tiny crystal of the same material of which the nearby surface is composed.
 In other words, an atom isn't attracted to a similar surface, but instead
 it causes the surface atoms to emit phonons into the crystal lattice
 whenever the single atom tries to move nearby.  The single atom behaves as
 if it's trapped in electromagnetic flypaper.  And the single atom is far
 far outside the atomic diameters of the surface atoms.
I will have to hunt that one down as well.  Very cool.

 Knowing that there's something weird going on in the tens-nM atomic
 region, I'd been waiting for such an experiment to crop up.  I saw that QM
 is still incomplete, because people think that atoms are fundamentally
 different than tiny metal antennas.  On the other hand, this topic isn't
 outside of physics.  Instead it's filed under VanderWaals interaction,
 little understood, little studied, and not given high importance.

I saw a quote from a fiction character in a webcomic i read recently
that made me laugh.

Quantum Mechanics is a lot like religion.  One side endeavors to
prove their answer is correct by twisting facts and ignoring others,
to make their version of reality fit, no matter how stupid it 

Re: Great biological mystery force Re: [Vo]:GATC and ESP

2009-05-31 Thread leaking pen
On Sun, May 31, 2009 at 8:44 AM, thomas malloy temall...@usfamily.net wrote:
 leaking pen wrote:

 Something to remember. electrons don't actually orbit the nucleus.
 they bounce around randomly, perhaps actually appearing and
 dissapearing, or, tunneling, within vague cloud like areas known as
 orbitals (because of the old Neils Bohr orbital model of the atom. )

 Perhaps the nucleus is a toroid and the electrons go through the hole in the
 center.


That would be the f orbital.
http://www.chemistry.ucsc.edu/~soliver/151A/Handouts/d-orbitals.gif

 When electrons are shared in a chemical bond, they bounce back and
 forth between the filled orbitals of the paired atoms, spending
 weekends with daddy and weeks with mommy (mommy being the most
 electronegative of the pair, if they arent the same atom)  Now, this
 fact, based on the distances involved in chemical bonds, means that



 what a classic Generation X analogy!

Considering that the parents who actually have such a setup are
generally boomers with their gen x kids, I figured it would be as
classic an analogy for the generation that actually HAD such a high
number of divorces and split up kids.  But hey, whatever floats your
boat.

 but it might be.  (Favorite chem teacher ever.  Was not afraid to say,
 I don't know. )


 wonderful teacher

 might that form of electron tunneling be your radio signal?  jumping
 to orbitals that are the exact same energy, because its the same
 element at the same energy state?


 Why not, radio waves are electromagnetic radiation, ditto for light. .


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Re: Great biological mystery force Re: [Vo]:GATC and ESP

2009-05-31 Thread Terry Blanton
I love the tuned circuit theory.

This DNA video is very fascinating:

http://www.youtube.com/watch?v=4jtmOZaIvS0feature=related

This textillian version shows the nucleotides swarming into place:

http://www.youtube.com/watch?v=dveIc7svytI

With all these radio signals in the cell, I wonder what prevents
intermodulation distortion from causing interference?

Terry

On Sat, May 30, 2009 at 4:36 PM, William Beaty bi...@eskimo.com wrote:
 On Sat, 23 May 2009, Terry Blanton wrote:

 http://www.dailygalaxy.com/my_weblog/2009/04/does-dna-have-t.html

 Does DNA Have Telepathic Properties?

 Terry, there's also a DNA Telepathy announcement from two or three years
 back, where two portions of DNA crystal were found to have identical
 segments via fluorescent tagging ...even though they were on either side
 of a membrane, and separated by many nanometers.  Someone here at the UW
 published a paper on it.  Search on dna telepathy for old hits? Here's
 one http://www.sciencedaily.com/releases/2008/01/080124103151.htm


 Also, there's an enormous unsolved problem in biology which is similar to
 this 'telepathy' problem, yet nobody talks about it:
  In living cells, how to keys and locks almost instantly find each
  other over vast distances, and how can they do it in an environment
  where organized water behaves as a solid at the micro-level?

 This problem becomes very obvious in the famous Harvard animation of the
 workings of a cell,   http://www.youtube.com/watch?v=fZZ3DD_tV9k
 http://multimedia.mcb.harvard.edu/media.html

 Watch ribosomes come flying in from a distance, then somehow finding and
 docking to a pore on the nucleus membrane.  What attracts them to the
 membrane?  How to they find the pore itself?  Wouldn't there have to be
 some kind of weird, key-lock attractive force that pulls that particular
 pore-type protein to that particular ribosome-type protein?

 And next, immediately the film shows another mystery, where the tip of a
 nucleus RNA comes flying up from below, docks with the pore/ribosome
 assembly, and starts running the tape to assemble a protein.  Why was
 the tip of the RNA strand attracted to the nuclear membrane?  How could
 it seek out the membrane pore?   (Stupid hint, grin: imagine that the
 video takes place in total darkness, so the molecules can't see where to go!)

 In other parts of the film, the animators didn't solve the mystery by
 illustrating unknown forces which nobody talks about.  Instead they did it
 by cheating.  When a fiber of actin or tubulin assembles itself, the
 animators simply created a film of these fibers dissolving, with all the
 broken parts diffusing away.  THEN THEY RAN THE FILM BACKWARDS!  It's a
 total violation of 3rd law entropy, with time running backwards.
 Molecules come flying in from vast distances and link onto the growing
 fiber tip.  What force drives this amazing phenomenon? More importantly,
 what forces select the proper type of molecule subunit, and only attracts
 that type of molecule towards the growing end of the fiber?  What
 mechanism can make it seem that time can run backwards, to assemble
 subcellular fibers?

 Nobody knows.

 Long ago it was explained by diffusion.  But then calculations showed that
 diffusion took too much time.   Then years later the discovery of solid
 organized intracellular water made the problem even more inexplicable.

 I suspect that the real problem is psychological:

   Since we KNOW that cellular biology has nearly all problems solved, and
   no huge revolutions in biological science happen anymore, therefore
   it's impossible that any vast unknown could still exist.  (If it did,
   it would make our contemporary science look ignorant and primitive,
   like something from last century! )  So, there's really nothing left to
   explore, at least nothing big.  We're only cleaning up the details,
   such as the protein-folding mystery.

 And so, if an entire community of smart and highly trained people looks
 directly at an enormous unsolved problem ...they won't see it.  They're
 selectively blind. And it's not even the complicated problems that they
 miss.  It's the obvious ones that even little kids would point out.
 Daddy, why does the continent of Africa fit onto south America like two
 pieces of a puzzle? Mommy, why does that animation of molecules look like
 time is running backwards?  If mommy is a cell biologist, then...
 shut up kid, you aren't smart enough to understand.  But the little kid
 is right.


 DNA has been found to have a bizarre ability to put itself together,
 even at a distance, when according to known science it shouldn't be
 able to. Explanation: None, at least not yet.

 What's realy amazing: your news item causes a stir, when most of the
 simplest cellular processes require that the molecules somehow must be
 attracted together over a distance, as if keys and locks with matching
 codes: can sense each other.

 Scientists are reporting evidence that contrary to our current 

Re: Great biological mystery force Re: [Vo]:GATC and ESP

2009-05-31 Thread William Beaty
On Sun, 31 May 2009, Terry Blanton wrote:

 I love the tuned circuit theory.

 This DNA video is very fascinating:

 http://www.youtube.com/watch?v=4jtmOZaIvS0feature=related

Good one!  Floating proteins come wiggling in from afar and find their
docking site.

Now I recall I first encountered the topic around 1985, when trying to
build a museum exhibit device to demonstrate an active site on a molecule:
a set of magnets in a pattern, and a corresponding set of opposite
magnets.  There was no attraction until a tiny fraction of a nanometer.
But even if real molecules could attract enzymes from 10X farther, they
couldn't suck in enzymes from more than a few atomic diameters distance.
But in order to function, biochem would need to pull in enzymes from
hundreds of atom-diameter distances (if not tens of thousands.)

 This textillian version shows the nucleotides swarming into place:
 http://www.youtube.com/watch?v=dveIc7svytI

 With all these radio signals in the cell, I wonder what prevents
 intermodulation distortion from causing interference?

Narrowband transmitters and receivers!   VERY narrow band, using high-Q
superconducting tuning coils, and no modulation other than the
line-splitting of one or more closely-coupled resonators.


(( ( (  (   ((O))   )  ) ) )))
William J. BeatySCIENCE HOBBYIST website
billb at amasci com http://amasci.com
EE/programmer/sci-exhibits   amateur science, hobby projects, sci fair
Seattle, WA  206-762-3818unusual phenomena, tesla coils, weird sci



Re: Great biological mystery force Re: [Vo]:GATC and ESP

2009-05-31 Thread Rhong Dhong

--- On Sun, 5/31/09, William Beaty bi...@eskimo.com wrote:

 
 Good one!  Floating proteins come wiggling in from
 afar and find their

I have had the pop-science idea that the reason the proteins, and other bits 
and pieces, found their mates, and found them so quickly, was that at their 
scales, just randomly moving around meant that they were destined to come near 
one another in a very short period of time.

If they had some help from electrical forces which tended to pull them together 
when they were in the vicinity of each other, then the two factors guaranteed 
that adenine would quickly unite with thymine, guanine with cytosine, etc., etc.

So, even if they were relatively far apart to start with, should this make much 
difference in their being able to get together?






Re: Great biological mystery force Re: [Vo]:GATC and ESP

2009-05-31 Thread William Beaty
On Sun, 31 May 2009, Rhong Dhong wrote:

 I have had the pop-science idea that the reason the proteins, and other
 bits and pieces, found their mates, and found them so quickly, was that
 at their scales, just randomly moving around meant that they were
 destined to come near one another in a very short period of time.

I think that's the assumption made by the biochem community: it has to be
explained by pure diffusion (random wandering and re-tries.)  When I
started
questioning this, someone pointed out an old paper that actually tried
some statistical calcs for one particular setup, and found that diffusion
was orders of magnitude too slow to explain the reaction rates.  Let me
see if I can find the ref.  Ah, it;s at the bottom of 
http://amasci.com/tesla/biores.html,
below the links

Here's one I remember.  When a ribosome is spewing out a protein, it has
to wait for the previous tRNA to move away, then it has to wait for one
special tRNA with matched anticodon out of a large number of unmatched
ones, to randomly drift in and dock at the ribosome.  It's like shaking up
a bag of keys, with one padlock, and waiting long enough for the right key
to randomly get positioned near the keyhole.  Then the lock changes code,
and has to repeat the whole process.  The sequence has to occur fast
enough to explain the rate of protein synthesis by ribosomes.

http://www.youtube.com/watch?v=B6O6uRb1D38

But that was old ideas, and today we know that water in cells is a near
solid, organized water, so diffusion of large molecules is greatly
slowed.  So the rate of protein synthesis is even more inexplicable than
before.

If the ribosome can issue a radio call for the next matched tRNA, ignore
the unmatched ones, and have the matched one be ferried into place by
electrically biased diffusion, much is explained.   As you say,
diffusion would succeed over short scales, if there was some other force
operating over long length scales.


 If they had some help from electrical forces which tended to pull them
 together when they were in the vicinity of each other, then the two
 factors guaranteed that adenine would quickly unite with thymine,
 guanine with cytosine, etc., etc.

 So, even if they were relatively far apart to start with, should this
 make much difference in their being able to get together?





(( ( (  (   ((O))   )  ) ) )))
William J. BeatySCIENCE HOBBYIST website
billb at amasci com http://amasci.com
EE/programmer/sci-exhibits   amateur science, hobby projects, sci fair
Seattle, WA  206-762-3818unusual phenomena, tesla coils, weird sci



Re: Great biological mystery force Re: [Vo]:GATC and ESP

2009-05-31 Thread William Beaty
On Sun, 31 May 2009, leaking pen wrote:

  If I try to boil down all the weird ideas that popped into my head, then
  here's the real question:  do atoms experience significant Vanderwaals
  forces with nearby atoms of the same species, but not with atoms of
  different species?  (Nearby, as in 50 nanometers, not molecular bond
  lengths.)

 Well, vanderwall includes so called London Forces, yes?  I was under
 the impression that those occured between dissimilar atoms, for
 example, the london forces in water that cause its high viscosity and
 surface tension occure between O in one atom and H in another.

Right, I've been labeling London force as VanderWaals.

So basically I'm asking whether the London force is stronger between atoms
which have matched absorption lines.  The simple example would be two
large-N atoms of the same element having many matched lines, though I
recall that mercury and O2 has a match.

Hmmm, now that you say the above, isn't the temperature of liquid Argon,
Neon, etc. determined by the London force?  Mix liquid argon with neon in
1:1 mixture, so they start keeping each other apart, and see if the
boiling point gets weird.  But if the force is strong over great
distances, then maybe we'd see little effect.  How about vapor pressure
over a liquid argon surface.  If there was attraction, then perhaps in a
vacuum chamber the argon pressure within 10nM of the liquid argon surface
would be inexplicably high, or perhaps the condensation rate seen during
transients in vapor pressure would be higher than that predicted purely
from first principles, thermo stats.


Here's one possible ref:

   Search keywords:  Volokitin Persson
   Non-contact friction enhanced by resonant atoms
   http://www.aip.org/pnu/2003/split/652-3.html






 Seriously, things not given high importance always seem to be where
 the breakthroughs and answers come from, dont they?

Yeah, Vanderwaals force always seemed intriguing, only because everybody
else is only fascinated by things like numerical solution of covalent bond
physics.

  field must be radial and entirely contained inside the orbital?  Well,
  what happens if experiments show otherwise.  And also, what happens if
  another hydrogen atom is passing by at 30nM distance?

 My only question is how this tunneling creates an attraction.   Is the
 electron actually imparting a force moving the atoms closer together
 while doing it?

Photon tunneling is also called magnetic field and electric field.
How could tiny electric dipoles attract each other?   Whether DC fields,
or AC fields at the same frequency, I think the math is identical.  But
now add a ferroelectric environment: liquid environment of water dipoles.
One might imagine that the ferroelectric liquid would behave as a shield.
But perhaps at short length scales it doesn't?



(( ( (  (   ((O))   )  ) ) )))
William J. BeatySCIENCE HOBBYIST website
billb at amasci com http://amasci.com
EE/programmer/sci-exhibits   amateur science, hobby projects, sci fair
Seattle, WA  206-762-3818unusual phenomena, tesla coils, weird sci



Re: Great biological mystery force Re: [Vo]:GATC and ESP

2009-05-31 Thread leaking pen
http://tinyurl.com/mqpszt

has some info on london forces and their effect on boiling temp.

heres some thougts on similar materials and weights and mp and bp.

http://cost.georgiasouthern.edu/chemistry/general/molecule/forces.htm

On Sun, May 31, 2009 at 4:05 PM, William Beaty bi...@eskimo.com wrote:
 On Sun, 31 May 2009, leaking pen wrote:

  If I try to boil down all the weird ideas that popped into my head, then
  here's the real question:  do atoms experience significant Vanderwaals
  forces with nearby atoms of the same species, but not with atoms of
  different species?  (Nearby, as in 50 nanometers, not molecular bond
  lengths.)

 Well, vanderwall includes so called London Forces, yes?  I was under
 the impression that those occured between dissimilar atoms, for
 example, the london forces in water that cause its high viscosity and
 surface tension occure between O in one atom and H in another.

 Right, I've been labeling London force as VanderWaals.

 So basically I'm asking whether the London force is stronger between atoms
 which have matched absorption lines.  The simple example would be two
 large-N atoms of the same element having many matched lines, though I
 recall that mercury and O2 has a match.

 Hmmm, now that you say the above, isn't the temperature of liquid Argon,
 Neon, etc. determined by the London force?  Mix liquid argon with neon in
 1:1 mixture, so they start keeping each other apart, and see if the
 boiling point gets weird.  But if the force is strong over great
 distances, then maybe we'd see little effect.  How about vapor pressure
 over a liquid argon surface.  If there was attraction, then perhaps in a
 vacuum chamber the argon pressure within 10nM of the liquid argon surface
 would be inexplicably high, or perhaps the condensation rate seen during
 transients in vapor pressure would be higher than that predicted purely
 from first principles, thermo stats.


 Here's one possible ref:

   Search keywords:  Volokitin Persson
   Non-contact friction enhanced by resonant atoms
   http://www.aip.org/pnu/2003/split/652-3.html






 Seriously, things not given high importance always seem to be where
 the breakthroughs and answers come from, dont they?

 Yeah, Vanderwaals force always seemed intriguing, only because everybody
 else is only fascinated by things like numerical solution of covalent bond
 physics.

  field must be radial and entirely contained inside the orbital?  Well,
  what happens if experiments show otherwise.  And also, what happens if
  another hydrogen atom is passing by at 30nM distance?

 My only question is how this tunneling creates an attraction.   Is the
 electron actually imparting a force moving the atoms closer together
 while doing it?

 Photon tunneling is also called magnetic field and electric field.
 How could tiny electric dipoles attract each other?   Whether DC fields,
 or AC fields at the same frequency, I think the math is identical.  But
 now add a ferroelectric environment: liquid environment of water dipoles.
 One might imagine that the ferroelectric liquid would behave as a shield.
 But perhaps at short length scales it doesn't?



 (( ( (  (   ((O))   )  ) ) )))
 William J. BeatySCIENCE HOBBYIST website
 billb at amasci com http://amasci.com
 EE/programmer/sci-exhibits   amateur science, hobby projects, sci fair
 Seattle, WA  206-762-3818unusual phenomena, tesla coils, weird sci





Re: Great biological mystery force Re: [Vo]:GATC and ESP

2009-05-31 Thread Harry Veeder

Maybe they have the protein equivalent of bird songs?
Harry


- Original Message -
From: Rhong Dhong rongdon...@yahoo.com
Date: Sunday, May 31, 2009 6:26 pm
Subject: Re: Great biological mystery force Re: [Vo]:GATC and ESP

 
 --- On Sun, 5/31/09, William Beaty bi...@eskimo.com wrote:
 
  
  Good one!  Floating proteins come wiggling in from
  afar and find their
 
 I have had the pop-science idea that the reason the proteins, and 
 other bits and pieces, found their mates, and found them so 
 quickly, was that at their scales, just randomly moving around 
 meant that they were destined to come near one another in a very 
 short period of time.
 
 If they had some help from electrical forces which tended to pull 
 them together when they were in the vicinity of each other, then 
 the two factors guaranteed that adenine would quickly unite with 
 thymine, guanine with cytosine, etc., etc.
 
 So, even if they were relatively far apart to start with, should 
 this make much difference in their being able to get together?
 
 
  
 




Great biological mystery force Re: [Vo]:GATC and ESP

2009-05-30 Thread William Beaty
On Sat, 23 May 2009, Terry Blanton wrote:

 http://www.dailygalaxy.com/my_weblog/2009/04/does-dna-have-t.html

 Does DNA Have Telepathic Properties?

Terry, there's also a DNA Telepathy announcement from two or three years
back, where two portions of DNA crystal were found to have identical
segments via fluorescent tagging ...even though they were on either side
of a membrane, and separated by many nanometers.  Someone here at the UW
published a paper on it.  Search on dna telepathy for old hits? Here's
one http://www.sciencedaily.com/releases/2008/01/080124103151.htm


Also, there's an enormous unsolved problem in biology which is similar to
this 'telepathy' problem, yet nobody talks about it:
  In living cells, how to keys and locks almost instantly find each
  other over vast distances, and how can they do it in an environment
  where organized water behaves as a solid at the micro-level?

This problem becomes very obvious in the famous Harvard animation of the
workings of a cell,   http://www.youtube.com/watch?v=fZZ3DD_tV9k
http://multimedia.mcb.harvard.edu/media.html

Watch ribosomes come flying in from a distance, then somehow finding and
docking to a pore on the nucleus membrane.  What attracts them to the
membrane?  How to they find the pore itself?  Wouldn't there have to be
some kind of weird, key-lock attractive force that pulls that particular
pore-type protein to that particular ribosome-type protein?

And next, immediately the film shows another mystery, where the tip of a
nucleus RNA comes flying up from below, docks with the pore/ribosome
assembly, and starts running the tape to assemble a protein.  Why was
the tip of the RNA strand attracted to the nuclear membrane?  How could
it seek out the membrane pore?   (Stupid hint, grin: imagine that the
video takes place in total darkness, so the molecules can't see where to go!)

In other parts of the film, the animators didn't solve the mystery by
illustrating unknown forces which nobody talks about.  Instead they did it
by cheating.  When a fiber of actin or tubulin assembles itself, the
animators simply created a film of these fibers dissolving, with all the
broken parts diffusing away.  THEN THEY RAN THE FILM BACKWARDS!  It's a
total violation of 3rd law entropy, with time running backwards.
Molecules come flying in from vast distances and link onto the growing
fiber tip.  What force drives this amazing phenomenon? More importantly,
what forces select the proper type of molecule subunit, and only attracts
that type of molecule towards the growing end of the fiber?  What
mechanism can make it seem that time can run backwards, to assemble
subcellular fibers?

Nobody knows.

Long ago it was explained by diffusion.  But then calculations showed that
diffusion took too much time.   Then years later the discovery of solid
organized intracellular water made the problem even more inexplicable.

I suspect that the real problem is psychological:

   Since we KNOW that cellular biology has nearly all problems solved, and
   no huge revolutions in biological science happen anymore, therefore
   it's impossible that any vast unknown could still exist.  (If it did,
   it would make our contemporary science look ignorant and primitive,
   like something from last century! )  So, there's really nothing left to
   explore, at least nothing big.  We're only cleaning up the details,
   such as the protein-folding mystery.

And so, if an entire community of smart and highly trained people looks
directly at an enormous unsolved problem ...they won't see it.  They're
selectively blind. And it's not even the complicated problems that they
miss.  It's the obvious ones that even little kids would point out.
Daddy, why does the continent of Africa fit onto south America like two
pieces of a puzzle? Mommy, why does that animation of molecules look like
time is running backwards?  If mommy is a cell biologist, then...
shut up kid, you aren't smart enough to understand.  But the little kid
is right.


 DNA has been found to have a bizarre ability to put itself together,
 even at a distance, when according to known science it shouldn't be
 able to. Explanation: None, at least not yet.

What's realy amazing: your news item causes a stir, when most of the
simplest cellular processes require that the molecules somehow must be
attracted together over a distance, as if keys and locks with matching
codes: can sense each other.

 Scientists are reporting evidence that contrary to our current beliefs
 about what is possible, intact double-stranded DNA has the “amazing”
 ability to recognize similarities in other DNA strands from a
 distance.

When ribosomes are assembling proteins, and the little tRNA's are bringing
in the subunits to join the growing strand ...how does the ribosome pull
in those particular building-blocks from vast distances?  Whatever this
mystery-force may be, it's enormously strong, since proteins are assembled
at kilohertz rate.

[sarcasm]Or maybe it's 

Re: Great biological mystery force Re: [Vo]:GATC and ESP

2009-05-30 Thread leaking pen
I knew this article reminded me of something.  Thanks Bill.


btw, cant resist.

Watch ribosomes come flying in from a distance, then somehow finding and
docking to a pore on the nucleus membrane.  What attracts them to the
membrane?  How to they find the pore itself?  Wouldn't there have to be
some kind of weird, key-lock attractive force that pulls that particular
pore-type protein to that particular ribosome-type protein?

Im now imagining a rick moranis ribosome wandering around the cell,
are you the gatekeeper?  I am the keymaster.

On Sat, May 30, 2009 at 2:36 PM, William Beaty bi...@eskimo.com wrote:
 On Sat, 23 May 2009, Terry Blanton wrote:

 http://www.dailygalaxy.com/my_weblog/2009/04/does-dna-have-t.html

 Does DNA Have Telepathic Properties?

 Terry, there's also a DNA Telepathy announcement from two or three years
 back, where two portions of DNA crystal were found to have identical
 segments via fluorescent tagging ...even though they were on either side
 of a membrane, and separated by many nanometers.  Someone here at the UW
 published a paper on it.  Search on dna telepathy for old hits? Here's
 one http://www.sciencedaily.com/releases/2008/01/080124103151.htm


 Also, there's an enormous unsolved problem in biology which is similar to
 this 'telepathy' problem, yet nobody talks about it:
  In living cells, how to keys and locks almost instantly find each
  other over vast distances, and how can they do it in an environment
  where organized water behaves as a solid at the micro-level?

 This problem becomes very obvious in the famous Harvard animation of the
 workings of a cell,   http://www.youtube.com/watch?v=fZZ3DD_tV9k
 http://multimedia.mcb.harvard.edu/media.html

 Watch ribosomes come flying in from a distance, then somehow finding and
 docking to a pore on the nucleus membrane.  What attracts them to the
 membrane?  How to they find the pore itself?  Wouldn't there have to be
 some kind of weird, key-lock attractive force that pulls that particular
 pore-type protein to that particular ribosome-type protein?

 And next, immediately the film shows another mystery, where the tip of a
 nucleus RNA comes flying up from below, docks with the pore/ribosome
 assembly, and starts running the tape to assemble a protein.  Why was
 the tip of the RNA strand attracted to the nuclear membrane?  How could
 it seek out the membrane pore?   (Stupid hint, grin: imagine that the
 video takes place in total darkness, so the molecules can't see where to go!)

 In other parts of the film, the animators didn't solve the mystery by
 illustrating unknown forces which nobody talks about.  Instead they did it
 by cheating.  When a fiber of actin or tubulin assembles itself, the
 animators simply created a film of these fibers dissolving, with all the
 broken parts diffusing away.  THEN THEY RAN THE FILM BACKWARDS!  It's a
 total violation of 3rd law entropy, with time running backwards.
 Molecules come flying in from vast distances and link onto the growing
 fiber tip.  What force drives this amazing phenomenon? More importantly,
 what forces select the proper type of molecule subunit, and only attracts
 that type of molecule towards the growing end of the fiber?  What
 mechanism can make it seem that time can run backwards, to assemble
 subcellular fibers?

 Nobody knows.

 Long ago it was explained by diffusion.  But then calculations showed that
 diffusion took too much time.   Then years later the discovery of solid
 organized intracellular water made the problem even more inexplicable.

 I suspect that the real problem is psychological:

   Since we KNOW that cellular biology has nearly all problems solved, and
   no huge revolutions in biological science happen anymore, therefore
   it's impossible that any vast unknown could still exist.  (If it did,
   it would make our contemporary science look ignorant and primitive,
   like something from last century! )  So, there's really nothing left to
   explore, at least nothing big.  We're only cleaning up the details,
   such as the protein-folding mystery.

 And so, if an entire community of smart and highly trained people looks
 directly at an enormous unsolved problem ...they won't see it.  They're
 selectively blind. And it's not even the complicated problems that they
 miss.  It's the obvious ones that even little kids would point out.
 Daddy, why does the continent of Africa fit onto south America like two
 pieces of a puzzle? Mommy, why does that animation of molecules look like
 time is running backwards?  If mommy is a cell biologist, then...
 shut up kid, you aren't smart enough to understand.  But the little kid
 is right.


 DNA has been found to have a bizarre ability to put itself together,
 even at a distance, when according to known science it shouldn't be
 able to. Explanation: None, at least not yet.

 What's realy amazing: your news item causes a stir, when most of the
 simplest cellular processes require that the molecules somehow 

Re: Great biological mystery force Re: [Vo]:GATC and ESP

2009-05-30 Thread William Beaty
On Sat, 30 May 2009, leaking pen wrote:

 Im now imagining a rick moranis ribosome wandering around the cell,
 are you the gatekeeper?  I am the keymaster.

Give Moranis a radio direction finder, and it all becomes easy!

Actually, my previous message was a lead-in to one of my old rants,
http://amasci.com/tesla/biores.html

Years ago I suffered a 'visionary experience,' and gained insights into
all sorts of weird topics, plus much delusional crap which doesn't work
when tested.  Among it all was a tidbit:  the idea that anomalous
biological forces exist, forces which act like radio transmitters and
receivers, with key-codes to allow biomolecules to be attracted together
over many nanometers distance.  At the time I was mostly unaware of the
unsolved problem in biology, but I'd had suspicions.

Heres the quick description:

 - Even though electrons orbiting atoms don't radiate photons, they
   do create an extremely intense AC field in the nearfield region
   surrounding the atom.   It's related to AC Casmir forces.

Physicists would see this as QM, as a field of virtual photons at the
frequency of the atom's absorption line, an AC field of indeterminate
phase, oriented along an indeterminate axis.  Electrical engineers would
imagine that every atom is a tiny AC electromagnet driven by a sinewave
source.  The atom's local field is AC, so there's no average force being
applied to nearby matter.  And atoms don't radiate continuously (i.e.
there's no loss mechanism.)  So, if an electron's period is in the
infrared frequencies, the atom will have an AC field which extends outward
to 1/4 infrared wavelength (or hundreds of nanometers.)

So atoms are different than we believe.  They're much larger.   But only
identical atoms could feel this large size.

Example: sodium atoms possess an intense AC field at the sodium line
frequency, and if two sodium atoms are ultra-cold and not moving fast with
Doppler shift, the oscillations are identical for both atoms,
synchronized.  They act like bar magnets attracting each other.  But these
are AC electromagnets. They only see other sodiums, and won't respond to
other atoms having a different frequency.  But what if two sodium atoms
happen to be out of phase?  Even if they have identical frequency, might
they not repel instead of attracting?  Well, that's the same problem as
two magnets having their poles out of orientation.  Like two magnets
they'd experience repulsion, a torque, then they'd flip themselves around,
attract, and slam together.  (Atoms could only slam together if ultra-cold
and not being jostled thermally.)

 - Molecules: Two atoms with identical frequencies, if bound together
   into a molecule, will create a line split frequency, a double-hump
   spectrum instead of a single spectral line.   Large biomolecules have a
   complicated band of frequencies.  But the band has the same basic
   nature as the double-hump line spectrum of a simple 2-atom molecule.
   Imagine a radio system based on double-hump receivers, not single
   line spectra.   Two tuning knobs, and 2D tuning indicator.

So biomolecules are like our resonant sodium atoms above: their line
spectrum creates an AC field which happens to be in synch with any
identical biomolecule.   The identical molecules pull upon each other over
relatively large distances (distances shorter than half a wavelength.)

 - Complicated molecules have a complicated spectrum, giving a key/lock
   effect where two molecules can attract, but where attraction is easily
   turned off by making some small change to spoil the synchronized AC
   fields.

So perhaps molecules could use this to *communicate*.  A transmitter
and receiver section of two distant proteins would be linked like two DC
charged capacitor plates.  But if one of the pair was changed slightly,
the force between them would vanish: it would turn from DC to AC.  You've
got a pair of CW walkie-talkies, plus a morse code key which detunes one
of them to break the connection.

This comm link could evolve into a nervous system, a sub-cellular one.
It's a nervous system which runs the organization inside single cells. But
each link in it's many chanins would only be effective over a few tens of
nanometers.  This would put a maximum limit on the size of a single-cell
organism.  Like Apatosaurus which isn't aware that a preditor is biting
the tip of its tail.  To grow a larger animal, multiple cells would have
to group together.

Years after seeing these ideas, I read that Terrence McKenna's brother, a
biologist, found out about the same concepts.   
http://www.heffter.org/pages/djm.html
He got it from LSD/DMT visions, and called it something like intelligent
superconductive biomolecules which talk with each other.  Well, yeah, I
guess they'd be called superconductive radios, since the AC field
around an atom persists forever, with no friction at the micro level.  But
the central idea is molecule radios, and labeling them 'superconductive'
is just a distraction.

Re: [Vo]:GATC and ESP

2009-05-24 Thread Terry Blanton
It would appear from the abstract:

http://pubs.acs.org/doi/abs/10.1021/jp7112297

that you are on the right track.  These spherulites appear to reach
out and touch.

Terry

On Sun, May 24, 2009 at 12:22 AM, leaking pen itsat...@gmail.com wrote:
 Exactly.  the more i think of it, the more i wonder also...  a lot of
 dna movement in liquids , the charge and polarity, is based on the
 final few bps on each end.  I wonder if same bp ends but different
 strands would end up together...

 that or size in general.  you know, the same thing that makes western
 blots work.

 On Sat, May 23, 2009 at 10:08 PM,  mix...@bigpond.com wrote:
 In reply to  leaking pen's message of Sat, 23 May 2009 10:15:40 -0700:
 Hi,

 I think you are almost on the right track. There was recently a 
 demonstration of
 how water molecules could align with one another to a depth of hundreds of
 thousands of molecules away from a surface. In so doing they form a 
 dielectric
 layer(*) that has the effect of communicating the charge from one side to 
 the
 other. The implication is that the charge pattern along the DNA strand would 
 be
 thus communicated and the strands most likely to be attracted, would be those
 with the closest matching opposite charges IOW with the matching pattern.

 * In a capacitor, the presence of a dielectric effectively reduces the 
 distance
 between the plates.

Umm, if we are talking nanometer distances...  water is, due to
naturally h+ and oh - dissasociation, going to have pockets of charge.
 mighten they not be moving towards each other, but towards the same
patch of water?
 [snip]
 Regards,

 Robin van Spaandonk

 http://rvanspaa.freehostia.com/Project.html







Re: [Vo]:GATC and ESP

2009-05-23 Thread leaking pen
Umm, if we are talking nanometer distances...  water is, due to
naturally h+ and oh - dissasociation, going to have pockets of charge.
 mighten they not be moving towards each other, but towards the same
patch of water?

On Sat, May 23, 2009 at 8:57 AM, Terry Blanton hohlr...@gmail.com wrote:
 http://www.dailygalaxy.com/my_weblog/2009/04/does-dna-have-t.html

 Does DNA Have Telepathic Properties?

 DNA has been found to have a bizarre ability to put itself together,
 even at a distance, when according to known science it shouldn't be
 able to. Explanation: None, at least not yet.

 Scientists are reporting evidence that contrary to our current beliefs
 about what is possible, intact double-stranded DNA has the “amazing”
 ability to recognize similarities in other DNA strands from a
 distance. Somehow they are able to identify one another, and the tiny
 bits of genetic material tend to congregate with similar DNA. The
 recognition of similar sequences in DNA’s chemical subunits, occurs in
 a way unrecognized by science. There is no known reason why the DNA is
 able to combine the way it does, and from a current theoretical
 standpoint this feat should be chemically impossible.

 Even so, the research published in ACS’ Journal of Physical Chemistry
 B, shows very clearly that homology recognition between sequences of
 several hundred nucleotides occurs without physical contact or
 presence of proteins. Double helixes of DNA can recognize matching
 molecules from a distance and then gather together, all seemingly
 without help from any other molecules or chemical signals.

 In the study, scientists observed the behavior of fluorescently tagged
 DNA strands placed in water that contained no proteins or other
 material that could interfere with the experiment. Strands with
 identical nucleotide sequences were about twice as likely to gather
 together as DNA strands with different sequences. No one knows how
 individual DNA strands could possibly be communicating in this way,
 yet somehow they do. The “telepathic” effect is a source of wonder and
 amazement for scientists.

 “Amazingly, the forces responsible for the sequence recognition can
 reach across more than one nanometer of water separating the surfaces
 of the nearest neighbor DNA,” said the authors Geoff S. Baldwin,
 Sergey Leikin, John M. Seddon, and Alexei A. Kornyshev and colleagues.

 This recognition effect may help increase the accuracy and efficiency
 of the homologous recombination of genes, which is a process
 responsible for DNA repair, evolution, and genetic diversity. The new
 findings may also shed light on ways to avoid recombination errors,
 which are factors in cancer, aging, and other health issues.

 end





Re: [Vo]:GATC and ESP

2009-05-23 Thread mixent
In reply to  leaking pen's message of Sat, 23 May 2009 10:15:40 -0700:
Hi,

I think you are almost on the right track. There was recently a demonstration of
how water molecules could align with one another to a depth of hundreds of
thousands of molecules away from a surface. In so doing they form a dielectric
layer(*) that has the effect of communicating the charge from one side to the
other. The implication is that the charge pattern along the DNA strand would be
thus communicated and the strands most likely to be attracted, would be those
with the closest matching opposite charges IOW with the matching pattern.

* In a capacitor, the presence of a dielectric effectively reduces the distance
between the plates.

Umm, if we are talking nanometer distances...  water is, due to
naturally h+ and oh - dissasociation, going to have pockets of charge.
 mighten they not be moving towards each other, but towards the same
patch of water?
[snip]
Regards,

Robin van Spaandonk

http://rvanspaa.freehostia.com/Project.html



Re: [Vo]:GATC and ESP

2009-05-23 Thread leaking pen
Exactly.  the more i think of it, the more i wonder also...  a lot of
dna movement in liquids , the charge and polarity, is based on the
final few bps on each end.  I wonder if same bp ends but different
strands would end up together...

that or size in general.  you know, the same thing that makes western
blots work.

On Sat, May 23, 2009 at 10:08 PM,  mix...@bigpond.com wrote:
 In reply to  leaking pen's message of Sat, 23 May 2009 10:15:40 -0700:
 Hi,

 I think you are almost on the right track. There was recently a demonstration 
 of
 how water molecules could align with one another to a depth of hundreds of
 thousands of molecules away from a surface. In so doing they form a dielectric
 layer(*) that has the effect of communicating the charge from one side to 
 the
 other. The implication is that the charge pattern along the DNA strand would 
 be
 thus communicated and the strands most likely to be attracted, would be those
 with the closest matching opposite charges IOW with the matching pattern.

 * In a capacitor, the presence of a dielectric effectively reduces the 
 distance
 between the plates.

Umm, if we are talking nanometer distances...  water is, due to
naturally h+ and oh - dissasociation, going to have pockets of charge.
 mighten they not be moving towards each other, but towards the same
patch of water?
 [snip]
 Regards,

 Robin van Spaandonk

 http://rvanspaa.freehostia.com/Project.html