Strange indeed. If you can send me a minimum data set that shows the problem I could take a look (presumably three files and the fasta db). If they're too big to email, you can ftp to ftp://insilicos.serveftp.net/pub . Brian On Fri, Feb 26, 2010 at 7:10 AM, Hannes Drexler <[email protected]>wrote:
> Hi Brian, > > thought about it too, however, when I delete the first two > successfully handled files from the sequence and start the database > search again with the next / third file of the list, the subsequent > two files are also successfully sent through the pipeline. I repeated > it a few more times now and to me it looks like as if XTandem database > searches are currently only possible in tranches of two. Strange, > isn´it? > > Hannes > > > 2010/2/24 Brian Pratt <[email protected]>: > > You'll want to narrow it down to identify the problem - for example, > what > > happens when you omit that 3rd file? > > > > On Wed, Feb 24, 2010 at 2:04 AM, hcadrexler <[email protected]> > > wrote: > >> > >> Hi there, > >> > >> I tried to perform an XTandem search following the XTandem 2009 > >> tutorial using my own data (29 mzXML files). The Database search is > >> performed for the first two files in the sequence without any problems > >> but then stops and does not proceed any further with the third (and > >> subsequent) files. I cannot figure out where the mistake was made. > >> Does anybody know why this might happen? > >> > >> Kind regards, > >> > >> Hannes > >> > >> -- > >> You received this message because you are subscribed to the Google > Groups > >> "spctools-discuss" group. > >> To post to this group, send email to [email protected]. > >> To unsubscribe from this group, send email to > >> [email protected]<spctools-discuss%[email protected]> > . > >> For more options, visit this group at > >> http://groups.google.com/group/spctools-discuss?hl=en. > >> > > > > -- > > You received this message because you are subscribed to the Google Groups > > "spctools-discuss" group. > > To post to this group, send email to [email protected]. > > To unsubscribe from this group, send email to > > [email protected]<spctools-discuss%[email protected]> > . > > For more options, visit this group at > > http://groups.google.com/group/spctools-discuss?hl=en. > > > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]<spctools-discuss%[email protected]> > . > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
