Oh, and send the xtandem inputs (mzxml and fasta), not the raw files. On Mon, Mar 1, 2010 at 7:14 AM, Brian Pratt <[email protected]>wrote:
> Just put it in the pub directory, not a subdirectry. Consider using > something like gzip to make the files smaller, too. > > > On Mon, Mar 1, 2010 at 2:40 AM, hcadrexler <[email protected]>wrote: > >> Hi Brian, >> >> I just tried to upload a few .raw files and the fasta db into the pub >> folder using filezilla, however, filezilla tells me that I that there >> is no adequate directory for the upload (see error message)?? >> >> .............. >> Command: STOR /pub/Hannes_20100301/20091125_AD_Boiani_oocyte_03.raw >> Response: 550 /pub/Hannes_20100301/ipi.MOUSE.v3.64.fasta: No such >> file >> or directory >> Command: PASV >> Response: 550 /pub/Hannes_20100301/20091125_AD_Boiani_oocyte_03.raw: >> No such file or directory >> Error: Critical file transfer error >> ............. >> >> Kind regards, >> >> Hannes >> >> On 26 Feb., 19:18, Brian Pratt <[email protected]> wrote: >> > Strange indeed. If you can send me a minimum data set that shows the >> > problem I could take a look (presumably three files and the fasta db). >> If >> > they're too big to email, you can ftp toftp:// >> insilicos.serveftp.net/pub. >> > Brian >> > On Fri, Feb 26, 2010 at 7:10 AM, Hannes Drexler >> > <[email protected]>wrote: >> > >> > > Hi Brian, >> > >> > > thought about it too, however, when I delete the first two >> > > successfully handled files from the sequence and start the database >> > > search again with the next / third file of the list, the subsequent >> > > two files are also successfully sent through the pipeline. I repeated >> > > it a few more times now and to me it looks like as if XTandem database >> > > searches are currently only possible in tranches of two. Strange, >> > > isn´it? >> > >> > > Hannes >> > >> > > 2010/2/24 Brian Pratt <[email protected]>: >> > > > You'll want to narrow it down to identify the problem - for >> example, >> > > what >> > > > happens when you omit that 3rd file? >> > >> > > > On Wed, Feb 24, 2010 at 2:04 AM, hcadrexler < >> [email protected]> >> > > > wrote: >> > >> > > >> Hi there, >> > >> > > >> I tried to perform an XTandem search following the XTandem 2009 >> > > >> tutorial using my own data (29 mzXML files). The Database search is >> > > >> performed for the first two files in the sequence without any >> problems >> > > >> but then stops and does not proceed any further with the third (and >> > > >> subsequent) files. I cannot figure out where the mistake was made. >> > > >> Does anybody know why this might happen? >> > >> > > >> Kind regards, >> > >> > > >> Hannes >> > >> > > >> -- >> > > >> You received this message because you are subscribed to the Google >> > > Groups >> > > >> "spctools-discuss" group. >> > > >> To post to this group, send email to >> [email protected]. >> > > >> To unsubscribe from this group, send email to >> > > >> [email protected]<spctools-discuss%[email protected]> >> <spctools-discuss%[email protected]<spctools-discuss%[email protected]> >> > >> > > . >> > > >> For more options, visit this group at >> > > >>http://groups.google.com/group/spctools-discuss?hl=en. >> > >> > > > -- >> > > > You received this message because you are subscribed to the Google >> Groups >> > > > "spctools-discuss" group. >> > > > To post to this group, send email to >> [email protected]. >> > > > To unsubscribe from this group, send email to >> > > > [email protected]<spctools-discuss%[email protected]> >> <spctools-discuss%[email protected]<spctools-discuss%[email protected]> >> > >> > > . >> > > > For more options, visit this group at >> > > >http://groups.google.com/group/spctools-discuss?hl=en. >> > >> > > -- >> > > You received this message because you are subscribed to the Google >> Groups >> > > "spctools-discuss" group. >> > > To post to this group, send email to >> [email protected]. >> > > To unsubscribe from this group, send email to >> > > [email protected]<spctools-discuss%[email protected]> >> <spctools-discuss%[email protected]<spctools-discuss%[email protected]> >> > >> > > . >> > > For more options, visit this group at >> > >http://groups.google.com/group/spctools-discuss?hl=en. >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To post to this group, send email to [email protected]. >> To unsubscribe from this group, send email to >> [email protected]<spctools-discuss%[email protected]> >> . >> For more options, visit this group at >> http://groups.google.com/group/spctools-discuss?hl=en. >> >> > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
