Regarding pwiz for extracting extra metadata: Our rawfile wrapper is a better bet if you're tied to c++, but if you just want to experiment with what's available in the com interface, your best bet is to access from managed code ala c#. Just add a reference to the xrawfile dll and you're set.
-Matt On Oct 12, 2010 9:07 AM, "Jeffrey Milloy" <jeffrey.a.mil...@gmail.com> wrote: > Thanks for the quick reply Natalie. I am looking into msconvert to > replace readw. Does msconvert check if the RAW file is "in aquisition" > before generating the mzXML? > > First, when I try to build msconvert, I have the same problem. Maybe I > should have titled my thread "Buliding tpplib" because that is where > fann.h is required! A search for fann on the web gives a fast > artificial neural network library - is this really what I need? Why am > I unable to build tpplib out of the box, as others do? > > Secondly, I am currently interested the rawfile libraries in order to > write some very short/simple code of my own. I am using readw as > example code with working rawfile libs. In particular, I want to grab > the comment and other header information in the RAW file in order to > populate our in-house database. Is msconvert a more appropriate > example to build from? > > > On Oct 11, 6:14 pm, Natalie Tasman <natalie.tas...@insilicos.com> > wrote: >> As one of the main developers on ReAdW, I'd suggest switching to the >> much more current msconvert program, part of the ProteoWizard project >> and included in the TPP (though likely a newer version is available >> directly from pwiz). ReAW does not have a lot of attention on it, >> versus the very-well maintained pwiz project. If there's no >> compelling reason to specifically use ReAdW, I'd switch. If there is, >> please let the pwiz team know so the functionality can be added to >> msconvert. >> >> -Natalie >> >> On Mon, Oct 11, 2010 at 2:24 PM, Jeffrey Milloy >> >> >> >> <jeffrey.a.mil...@gmail.com> wrote: >> > I'm trying to build ReAdW under winxp. >> >> > After no success with Visual Studio 2010 Professional, I am using >> > Visual Studio 2005 Professional. >> >> > I checked out tags/release_4-4-0/trans_proteomic_pipeline, and tried >> > to build the ReAdW project under the Debug configuration. Everything >> > went well until tpplib, where it could not find fann.h: >> >> > 6>C:\sashimi\trans_proteomic_pipeline\src\Parsers/Algorithm2XML/ >> > RTCalculator.h(29) : fatal error C1083: Cannot open include file: >> > 'fann.h': No such file or directory >> >> > Any ideas? >> >> > Jeff >> >> > -- >> > You received this message because you are subscribed to the Google Groups "spctools-discuss" group. >> > To post to this group, send email to spctools-disc...@googlegroups.com. >> > To unsubscribe from this group, send email to spctools-discuss+unsubscr...@googlegroups.com<spctools-discuss%2bunsubscr...@googlegroups.com> . >> > For more options, visit this group athttp:// groups.google.com/group/spctools-discuss?hl=en. > > -- > You received this message because you are subscribed to the Google Groups "spctools-discuss" group. > To post to this group, send email to spctools-disc...@googlegroups.com. > To unsubscribe from this group, send email to spctools-discuss+unsubscr...@googlegroups.com<spctools-discuss%2bunsubscr...@googlegroups.com> . > For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to spctools-disc...@googlegroups.com. To unsubscribe from this group, send email to spctools-discuss+unsubscr...@googlegroups.com. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
