To keep everyone on the same page, even though this thread is referring to building ReAdW in VC, I'm pretty sure David's successful gcc/mingw builds refers to building the other TPP components and not the mzXML converter that you're interested in.
On Tue, Oct 12, 2010 at 11:35 AM, Jeffrey Milloy <[email protected]> wrote: > From what I can see, the folder structure in tpp/extern/gsl-1.14 > doesn't match the include file paths anywhere in gsl. Any ideas why I > have this discrepency? > > for example, in extern/gsl-1.14/linalg/balance.c: > > #include <config.h> > #include <stdlib.h> > #include <gsl/gsl_math.h> > #include <gsl/gsl_vector.h> > #include <gsl/gsl_matrix.h> > #include <gsl/gsl_blas.h> > > In the vc8 solution, gsl-1.14 is listed as an include directory, which > is fine except there is no gsl folder. The gsl headers cannot be > found. I changed it to the following, but this problem pervades all of > gsl. > > #include <config.h> > #include <stdlib.h> > #include <gsl_math.h> > #include <vector/gsl_vector.h> > #include <matrix/gsl_matrix.h> > #include <blas/gsl_blas.h> > > How does it look for you, David? > > Jeff > > > On Oct 12, 2:23 pm, David Shteynberg <[email protected]> > wrote: >> Yes, build quite nicely for me using gcc under linux and mingw. >> >> -David >> >> On Tue, Oct 12, 2010 at 10:57 AM, Jeffrey Milloy >> >> >> >> <[email protected]> wrote: >> > Hi Brian >> >> > Building is no longer essential for me, but I gave it a try anyways. >> > the fann libraries are sorted out, but the gsl project is a mess of >> > missing/moved header files. Does trunk build for anyone right now? >> >> > On Oct 12, 10:36 am, Brian Pratt <[email protected]> wrote: >> >> Try building from trunk. >> >> >> That fann stuff came in to the build fairly recently and was probably >> >> pushed into the branch without the accompanying changes to the MSVC >> >> build files. >> >> >> - Brian >> >> >> On Tue, Oct 12, 2010 at 7:02 AM, Jeffrey Milloy >> >> >> <[email protected]> wrote: >> >> > Thanks for the quick reply Natalie. I am looking into msconvert to >> >> > replace readw. Does msconvert check if the RAW file is "in aquisition" >> >> > before generating the mzXML? >> >> >> > First, when I try to build msconvert, I have the same problem. Maybe I >> >> > should have titled my thread "Buliding tpplib" because that is where >> >> > fann.h is required! A search for fann on the web gives a fast >> >> > artificial neural network library - is this really what I need? Why am >> >> > I unable to build tpplib out of the box, as others do? >> >> >> > Secondly, I am currently interested the rawfile libraries in order to >> >> > write some very short/simple code of my own. I am using readw as >> >> > example code with working rawfile libs. In particular, I want to grab >> >> > the comment and other header information in the RAW file in order to >> >> > populate our in-house database. Is msconvert a more appropriate >> >> > example to build from? >> >> >> > On Oct 11, 6:14 pm, Natalie Tasman <[email protected]> >> >> > wrote: >> >> >> As one of the main developers on ReAdW, I'd suggest switching to the >> >> >> much more current msconvert program, part of the ProteoWizard project >> >> >> and included in the TPP (though likely a newer version is available >> >> >> directly from pwiz). ReAW does not have a lot of attention on it, >> >> >> versus the very-well maintained pwiz project. If there's no >> >> >> compelling reason to specifically use ReAdW, I'd switch. If there is, >> >> >> please let the pwiz team know so the functionality can be added to >> >> >> msconvert. >> >> >> >> -Natalie >> >> >> >> On Mon, Oct 11, 2010 at 2:24 PM, Jeffrey Milloy >> >> >> >> <[email protected]> wrote: >> >> >> > I'm trying to build ReAdW under winxp. >> >> >> >> > After no success with Visual Studio 2010 Professional, I am using >> >> >> > Visual Studio 2005 Professional. >> >> >> >> > I checked out tags/release_4-4-0/trans_proteomic_pipeline, and tried >> >> >> > to build the ReAdW project under the Debug configuration. Everything >> >> >> > went well until tpplib, where it could not find fann.h: >> >> >> >> > 6>C:\sashimi\trans_proteomic_pipeline\src\Parsers/Algorithm2XML/ >> >> >> > RTCalculator.h(29) : fatal error C1083: Cannot open include file: >> >> >> > 'fann.h': No such file or directory >> >> >> >> > Any ideas? >> >> >> >> > Jeff >> >> >> >> > -- >> >> >> > You received this message because you are subscribed to the Google >> >> >> > Groups "spctools-discuss" group. >> >> >> > To post to this group, send email to >> >> >> > [email protected]. >> >> >> > To unsubscribe from this group, send email to >> >> >> > [email protected]. >> >> >> > For more options, visit this group >> >> >> > athttp://groups.google.com/group/spctools-discuss?hl=en. >> >> >> > -- >> >> > You received this message because you are subscribed to the Google >> >> > Groups "spctools-discuss" group. >> >> > To post to this group, send email to [email protected]. >> >> > To unsubscribe from this group, send email to >> >> > [email protected]. >> >> > For more options, visit this group >> >> > athttp://groups.google.com/group/spctools-discuss?hl=en. >> >> > -- >> > You received this message because you are subscribed to the Google Groups >> > "spctools-discuss" group. >> > To post to this group, send email to [email protected]. >> > To unsubscribe from this group, send email to >> > [email protected]. >> > For more options, visit this group >> > athttp://groups.google.com/group/spctools-discuss?hl=en. > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]. > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. 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