>From what I can see, the folder structure in tpp/extern/gsl-1.14 doesn't match the include file paths anywhere in gsl. Any ideas why I have this discrepency?
for example, in extern/gsl-1.14/linalg/balance.c: #include <config.h> #include <stdlib.h> #include <gsl/gsl_math.h> #include <gsl/gsl_vector.h> #include <gsl/gsl_matrix.h> #include <gsl/gsl_blas.h> In the vc8 solution, gsl-1.14 is listed as an include directory, which is fine except there is no gsl folder. The gsl headers cannot be found. I changed it to the following, but this problem pervades all of gsl. #include <config.h> #include <stdlib.h> #include <gsl_math.h> #include <vector/gsl_vector.h> #include <matrix/gsl_matrix.h> #include <blas/gsl_blas.h> How does it look for you, David? Jeff On Oct 12, 2:23 pm, David Shteynberg <[email protected]> wrote: > Yes, build quite nicely for me using gcc under linux and mingw. > > -David > > On Tue, Oct 12, 2010 at 10:57 AM, Jeffrey Milloy > > > > <[email protected]> wrote: > > Hi Brian > > > Building is no longer essential for me, but I gave it a try anyways. > > the fann libraries are sorted out, but the gsl project is a mess of > > missing/moved header files. Does trunk build for anyone right now? > > > On Oct 12, 10:36 am, Brian Pratt <[email protected]> wrote: > >> Try building from trunk. > > >> That fann stuff came in to the build fairly recently and was probably > >> pushed into the branch without the accompanying changes to the MSVC > >> build files. > > >> - Brian > > >> On Tue, Oct 12, 2010 at 7:02 AM, Jeffrey Milloy > > >> <[email protected]> wrote: > >> > Thanks for the quick reply Natalie. I am looking into msconvert to > >> > replace readw. Does msconvert check if the RAW file is "in aquisition" > >> > before generating the mzXML? > > >> > First, when I try to build msconvert, I have the same problem. Maybe I > >> > should have titled my thread "Buliding tpplib" because that is where > >> > fann.h is required! A search for fann on the web gives a fast > >> > artificial neural network library - is this really what I need? Why am > >> > I unable to build tpplib out of the box, as others do? > > >> > Secondly, I am currently interested the rawfile libraries in order to > >> > write some very short/simple code of my own. I am using readw as > >> > example code with working rawfile libs. In particular, I want to grab > >> > the comment and other header information in the RAW file in order to > >> > populate our in-house database. Is msconvert a more appropriate > >> > example to build from? > > >> > On Oct 11, 6:14 pm, Natalie Tasman <[email protected]> > >> > wrote: > >> >> As one of the main developers on ReAdW, I'd suggest switching to the > >> >> much more current msconvert program, part of the ProteoWizard project > >> >> and included in the TPP (though likely a newer version is available > >> >> directly from pwiz). ReAW does not have a lot of attention on it, > >> >> versus the very-well maintained pwiz project. If there's no > >> >> compelling reason to specifically use ReAdW, I'd switch. If there is, > >> >> please let the pwiz team know so the functionality can be added to > >> >> msconvert. > > >> >> -Natalie > > >> >> On Mon, Oct 11, 2010 at 2:24 PM, Jeffrey Milloy > > >> >> <[email protected]> wrote: > >> >> > I'm trying to build ReAdW under winxp. > > >> >> > After no success with Visual Studio 2010 Professional, I am using > >> >> > Visual Studio 2005 Professional. > > >> >> > I checked out tags/release_4-4-0/trans_proteomic_pipeline, and tried > >> >> > to build the ReAdW project under the Debug configuration. Everything > >> >> > went well until tpplib, where it could not find fann.h: > > >> >> > 6>C:\sashimi\trans_proteomic_pipeline\src\Parsers/Algorithm2XML/ > >> >> > RTCalculator.h(29) : fatal error C1083: Cannot open include file: > >> >> > 'fann.h': No such file or directory > > >> >> > Any ideas? > > >> >> > Jeff > > >> >> > -- > >> >> > You received this message because you are subscribed to the Google > >> >> > Groups "spctools-discuss" group. > >> >> > To post to this group, send email to > >> >> > [email protected]. > >> >> > To unsubscribe from this group, send email to > >> >> > [email protected]. > >> >> > For more options, visit this group > >> >> > athttp://groups.google.com/group/spctools-discuss?hl=en. > > >> > -- > >> > You received this message because you are subscribed to the Google > >> > Groups "spctools-discuss" group. > >> > To post to this group, send email to [email protected]. > >> > To unsubscribe from this group, send email to > >> > [email protected]. > >> > For more options, visit this group > >> > athttp://groups.google.com/group/spctools-discuss?hl=en. > > > -- > > You received this message because you are subscribed to the Google Groups > > "spctools-discuss" group. > > To post to this group, send email to [email protected]. > > To unsubscribe from this group, send email to > > [email protected]. > > For more options, visit this group > > athttp://groups.google.com/group/spctools-discuss?hl=en. -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
