Given that I *do* build with MSVC as the code stands, it's some kind of a config issue and changing the code would probably be a Bad Thing.
But yeah, we can let it slide if you're up and moving again. On Tue, Oct 12, 2010 at 11:51 AM, Jeffrey Milloy <jeffrey.a.mil...@gmail.com> wrote: > It's true. At this point, we can drop the thread if no one cares if > msconvert or readw builds in VC8, as I have a solution for my needs. > And if we do care, maybe this discussion should be continued under a > more appropriate title. > > > On Oct 12, 2:44 pm, Jimmy Eng <jke...@gmail.com> wrote: >> To keep everyone on the same page, even though this thread is >> referring to building ReAdW in VC, I'm pretty sure David's successful >> gcc/mingw builds refers to building the other TPP components and not >> the mzXML converter that you're interested in. >> >> On Tue, Oct 12, 2010 at 11:35 AM, Jeffrey Milloy >> >> >> >> <jeffrey.a.mil...@gmail.com> wrote: >> > From what I can see, the folder structure in tpp/extern/gsl-1.14 >> > doesn't match the include file paths anywhere in gsl. Any ideas why I >> > have this discrepency? >> >> > for example, in extern/gsl-1.14/linalg/balance.c: >> >> > #include <config.h> >> > #include <stdlib.h> >> > #include <gsl/gsl_math.h> >> > #include <gsl/gsl_vector.h> >> > #include <gsl/gsl_matrix.h> >> > #include <gsl/gsl_blas.h> >> >> > In the vc8 solution, gsl-1.14 is listed as an include directory, which >> > is fine except there is no gsl folder. The gsl headers cannot be >> > found. I changed it to the following, but this problem pervades all of >> > gsl. >> >> > #include <config.h> >> > #include <stdlib.h> >> > #include <gsl_math.h> >> > #include <vector/gsl_vector.h> >> > #include <matrix/gsl_matrix.h> >> > #include <blas/gsl_blas.h> >> >> > How does it look for you, David? >> >> > Jeff >> >> > On Oct 12, 2:23 pm, David Shteynberg <dshteynb...@systemsbiology.org> >> > wrote: >> >> Yes, build quite nicely for me using gcc under linux and mingw. >> >> >> -David >> >> >> On Tue, Oct 12, 2010 at 10:57 AM, Jeffrey Milloy >> >> >> <jeffrey.a.mil...@gmail.com> wrote: >> >> > Hi Brian >> >> >> > Building is no longer essential for me, but I gave it a try anyways. >> >> > the fann libraries are sorted out, but the gsl project is a mess of >> >> > missing/moved header files. Does trunk build for anyone right now? >> >> >> > On Oct 12, 10:36 am, Brian Pratt <brian.pr...@insilicos.com> wrote: >> >> >> Try building from trunk. >> >> >> >> That fann stuff came in to the build fairly recently and was probably >> >> >> pushed into the branch without the accompanying changes to the MSVC >> >> >> build files. >> >> >> >> - Brian >> >> >> >> On Tue, Oct 12, 2010 at 7:02 AM, Jeffrey Milloy >> >> >> >> <jeffrey.a.mil...@gmail.com> wrote: >> >> >> > Thanks for the quick reply Natalie. I am looking into msconvert to >> >> >> > replace readw. Does msconvert check if the RAW file is "in >> >> >> > aquisition" >> >> >> > before generating the mzXML? >> >> >> >> > First, when I try to build msconvert, I have the same problem. Maybe >> >> >> > I >> >> >> > should have titled my thread "Buliding tpplib" because that is where >> >> >> > fann.h is required! A search for fann on the web gives a fast >> >> >> > artificial neural network library - is this really what I need? Why >> >> >> > am >> >> >> > I unable to build tpplib out of the box, as others do? >> >> >> >> > Secondly, I am currently interested the rawfile libraries in order to >> >> >> > write some very short/simple code of my own. I am using readw as >> >> >> > example code with working rawfile libs. In particular, I want to grab >> >> >> > the comment and other header information in the RAW file in order to >> >> >> > populate our in-house database. Is msconvert a more appropriate >> >> >> > example to build from? >> >> >> >> > On Oct 11, 6:14 pm, Natalie Tasman <natalie.tas...@insilicos.com> >> >> >> > wrote: >> >> >> >> As one of the main developers on ReAdW, I'd suggest switching to the >> >> >> >> much more current msconvert program, part of the ProteoWizard >> >> >> >> project >> >> >> >> and included in the TPP (though likely a newer version is available >> >> >> >> directly from pwiz). ReAW does not have a lot of attention on it, >> >> >> >> versus the very-well maintained pwiz project. If there's no >> >> >> >> compelling reason to specifically use ReAdW, I'd switch. If there >> >> >> >> is, >> >> >> >> please let the pwiz team know so the functionality can be added to >> >> >> >> msconvert. >> >> >> >> >> -Natalie >> >> >> >> >> On Mon, Oct 11, 2010 at 2:24 PM, Jeffrey Milloy >> >> >> >> >> <jeffrey.a.mil...@gmail.com> wrote: >> >> >> >> > I'm trying to build ReAdW under winxp. >> >> >> >> >> > After no success with Visual Studio 2010 Professional, I am using >> >> >> >> > Visual Studio 2005 Professional. >> >> >> >> >> > I checked out tags/release_4-4-0/trans_proteomic_pipeline, and >> >> >> >> > tried >> >> >> >> > to build the ReAdW project under the Debug configuration. >> >> >> >> > Everything >> >> >> >> > went well until tpplib, where it could not find fann.h: >> >> >> >> >> > 6>C:\sashimi\trans_proteomic_pipeline\src\Parsers/Algorithm2XML/ >> >> >> >> > RTCalculator.h(29) : fatal error C1083: Cannot open include file: >> >> >> >> > 'fann.h': No such file or directory >> >> >> >> >> > Any ideas? >> >> >> >> >> > Jeff >> >> >> >> >> > -- >> >> >> >> > You received this message because you are subscribed to the >> >> >> >> > Google Groups "spctools-discuss" group. >> >> >> >> > To post to this group, send email to >> >> >> >> > spctools-disc...@googlegroups.com. >> >> >> >> > To unsubscribe from this group, send email to >> >> >> >> > spctools-discuss+unsubscr...@googlegroups.com. >> >> >> >> > For more options, visit this group >> >> >> >> > athttp://groups.google.com/group/spctools-discuss?hl=en. >> >> >> >> > -- >> >> >> > You received this message because you are subscribed to the Google >> >> >> > Groups "spctools-discuss" group. >> >> >> > To post to this group, send email to >> >> >> > spctools-disc...@googlegroups.com. >> >> >> > To unsubscribe from this group, send email to >> >> >> > spctools-discuss+unsubscr...@googlegroups.com. >> >> >> > For more options, visit this group >> >> >> > athttp://groups.google.com/group/spctools-discuss?hl=en. >> >> >> > -- >> >> > You received this message because you are subscribed to the Google >> >> > Groups "spctools-discuss" group. >> >> > To post to this group, send email to spctools-disc...@googlegroups.com. >> >> > To unsubscribe from this group, send email to >> >> > spctools-discuss+unsubscr...@googlegroups.com. >> >> > For more options, visit this group >> >> > athttp://groups.google.com/group/spctools-discuss?hl=en. >> >> > -- >> > You received this message because you are subscribed to the Google Groups >> > "spctools-discuss" group. >> > To post to this group, send email to spctools-disc...@googlegroups.com. >> > To unsubscribe from this group, send email to >> > spctools-discuss+unsubscr...@googlegroups.com. >> > For more options, visit this group >> > athttp://groups.google.com/group/spctools-discuss?hl=en. > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to spctools-disc...@googlegroups.com. > To unsubscribe from this group, send email to > spctools-discuss+unsubscr...@googlegroups.com. > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. 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