Hi Rich, Libra is able to support any number of channels and for any type of isobaric labeling, including TMT. You can generate an appropriate Libra condition file through Petunia (the TPP GUI), or we can send you a template that you can edit and use in your analysis. Cheers, --Luis
On Fri, Jan 14, 2011 at 4:33 PM, Eugene Kapp <[email protected]>wrote: > Hi Rich, > > It depends on what mass spec instrument is generating the data - what > instrument are you using? Just so you know MaxQuant has its own in-built > search engine so has no dependency on Mascot anymore (but the latest > software is undocumented -also not sure if it handles iTRAQ). Another option > is ProteinPilot (contact ABI for a free trial - but this is commercial > software at the end of the day$$$). > > Eugene > > ------------------------------ > *From:* [email protected] on behalf of Rich > *Sent:* Sat 15/01/2011 9:11 AM > *To:* spctools-discuss > *Subject:* [spctools-discuss] Itraq analysis > > Hi everyone, Its been a while, I'm interested in analyzing some Itraq > data. Has anyone successfully loaded it into labkey server? I will > likely have 8 channels and it appears Libra may only support four > channel reads. Does anyone know if Libra will support 8 channels? As > an alternative to Itraq I was also considering Max Quant for Itraq > analysis but it would require us to purchase a mascot license. From > what I can tell you can not run data from other search engines into > Max Quant. Does anyone have any recommendations on what software is > best for Itraq data? Any suggestions folks have is appreciated. Thanks > -Rich > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]<spctools-discuss%[email protected]> > . > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > ------------------------------ > This communication is intended only for the named recipient and may contain > information that is confidential, legally privileged or subject to > copyright; the Ludwig Institute for Cancer Research Ltd does not waive any > rights if you have received this communication in error. > The views expressed in this communication are those of the sender and do > not necessarily reflect the views of the Ludwig Institute for Cancer > Research Ltd. > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]<spctools-discuss%[email protected]> > . > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
