Sent offline. --Luis
On Tue, Jan 18, 2011 at 3:52 PM, Rich <[email protected]> wrote: > Thanks Luis, Sounds great! Could you send me a template? Thanks -Rich > > On Jan 14, 4:37 pm, Luis Mendoza <[email protected]> wrote: > > Hi Rich, > > Libra is able to support any number of channels and for any type of > isobaric > > labeling, including TMT. You can generate an appropriate Libra condition > > file through Petunia (the TPP GUI), or we can send you a template that > you > > can edit and use in your analysis. > > Cheers, > > --Luis > > > > On Fri, Jan 14, 2011 at 4:33 PM, Eugene Kapp <[email protected] > >wrote: > > > > > Hi Rich, > > > > > It depends on what mass spec instrument is generating the data - what > > > instrument are you using? Just so you know MaxQuant has its own > in-built > > > search engine so has no dependency on Mascot anymore (but the latest > > > software is undocumented -also not sure if it handles iTRAQ). Another > option > > > is ProteinPilot (contact ABI for a free trial - but this is commercial > > > software at the end of the day$$$). > > > > > Eugene > > > > > ------------------------------ > > > *From:* [email protected] on behalf of Rich > > > *Sent:* Sat 15/01/2011 9:11 AM > > > *To:* spctools-discuss > > > *Subject:* [spctools-discuss] Itraq analysis > > > > > Hi everyone, Its been a while, I'm interested in analyzing some Itraq > > > data. Has anyone successfully loaded it into labkey server? I will > > > likely have 8 channels and it appears Libra may only support four > > > channel reads. Does anyone know if Libra will support 8 channels? As > > > an alternative to Itraq I was also considering Max Quant for Itraq > > > analysis but it would require us to purchase a mascot license. From > > > what I can tell you can not run data from other search engines into > > > Max Quant. Does anyone have any recommendations on what software is > > > best for Itraq data? Any suggestions folks have is appreciated. Thanks > > > -Rich > > > > > -- > > > You received this message because you are subscribed to the Google > Groups > > > "spctools-discuss" group. > > > To post to this group, send email to [email protected] > . > > > To unsubscribe from this group, send email to > > > [email protected]<spctools-discuss%[email protected]> > <spctools-discuss%[email protected]<spctools-discuss%[email protected]> > > > > > . > > > For more options, visit this group at > > >http://groups.google.com/group/spctools-discuss?hl=en. > > > > > ------------------------------ > > > This communication is intended only for the named recipient and may > contain > > > information that is confidential, legally privileged or subject to > > > copyright; the Ludwig Institute for Cancer Research Ltd does not waive > any > > > rights if you have received this communication in error. > > > The views expressed in this communication are those of the sender and > do > > > not necessarily reflect the views of the Ludwig Institute for Cancer > > > Research Ltd. > > > > > -- > > > You received this message because you are subscribed to the Google > Groups > > > "spctools-discuss" group. > > > To post to this group, send email to [email protected] > . > > > To unsubscribe from this group, send email to > > > [email protected]<spctools-discuss%[email protected]> > <spctools-discuss%[email protected]<spctools-discuss%[email protected]> > > > > > . > > > For more options, visit this group at > > >http://groups.google.com/group/spctools-discuss?hl=en. > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]<spctools-discuss%[email protected]> > . > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
