Hi,David,
The link you provided for downloading PTMProphet not valid,could you
offer any other way I can download PTMProphet?

On Tue, Oct 18, 2011 at 7:29 AM, David Shteynberg
<[email protected]> wrote:
> Hi LW,
>
> Yes I have used ascore with some success, although it is not
> integrated with TPP and crashes sometimes on longer peptides.  We have
> a TPP integrated tool that is faster and as good or better than Ascore
> from some initial testing.  The tool is available on commandline only
> at the moment and is not distributed with the installer yet.  It is
> called PTMProphet and you can get an initial Windows only version of
> the test executable from this link:
> http://dl.dropbox.com/u/21286225/PTMProphetParser.exe
>
> Hope that helps,
> -David
> On Mon, Oct 17, 2011 at 4:11 PM, LW <[email protected]> wrote:
>> Hi,
>>
>> I am wondering if anyone has use the ascore for
>> phospho site localization on XTandem/TPP processed data.
>> The software in Gygi lab seems to be based on sequest dta/out output.
>>
>> Thanks,
>> LW
>>
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