Hi LW, The version distributed in the release is perhaps a bit older than the one in SVN trunk. Have you tried building it from trunk? I know my version is working on Linux, if you build from trunk and it still doesn't work please let me know and I will commit my absolute latest code (that I've been testing without seg faults).
Thanks, -David On Thu, Oct 20, 2011 at 9:56 AM, LW <[email protected]> wrote: > Hi David, > > I got a segmentation fault when I tried to run the command-line linux > build. > Is there a working linux version? > > Thanks, > LW > > > On Oct 19, 10:37 am, LW <[email protected]> wrote: >> Hi David, >> >> Thanks for the tip. I am interested in knowing how does PTMProphet >> algorithm differs from Ascore. >> Are they exactly same except implementation. >> Also, I can locate the PTMProphetParser in my linux build of TPP4.5.0. >> Can this be used instead of the window binary? >> It says the usage is PTMProphetParser <OPTIONS> <file1.pep.xml> >> May I know the options available? I am assuming it takes in >> PeptideProphet >> processed pep.xml. >> >> Thanks, >> LW >> >> On Oct 17, 4:29 pm, David Shteynberg >> >> >> >> >> >> >> >> <[email protected]> wrote: >> > Hi LW, >> >> > Yes I have used ascore with some success, although it is not >> > integrated with TPP and crashes sometimes on longer peptides. We have >> > a TPP integrated tool that is faster and as good or better than Ascore >> > from some initial testing. The tool is available on commandline only >> > at the moment and is not distributed with the installer yet. It is >> > called PTMProphet and you can get an initial Windows only version of >> > the test executable from this >> > link:http://dl.dropbox.com/u/21286225/PTMProphetParser.exe >> >> > Hope that helps, >> > -David >> >> > On Mon, Oct 17, 2011 at 4:11 PM, LW <[email protected]> wrote: >> > > Hi, >> >> > > I am wondering if anyone has use the ascore for >> > > phospho site localization on XTandem/TPP processed data. >> > > The software in Gygi lab seems to be based on sequest dta/out output. >> >> > > Thanks, >> > > LW >> >> > > -- >> > > You received this message because you are subscribed to the Google >> > > Groups "spctools-discuss" group. >> > > To post to this group, send email to [email protected]. >> > > To unsubscribe from this group, send email to >> > > [email protected]. >> > > For more options, visit this group >> > > athttp://groups.google.com/group/spctools-discuss?hl=en. > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]. > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
