Hi Alex, I can't help with the cluster issue per se. However, from the directory structure it appears its running some version of Linux. It is my understanding that the utilities that convert RAW files to mzML or mzXML require a windows environment. You might consider using MSConvert on your local machine to generate your mzML files and upload them as your starting point in the pipeline.
Many times error messages are only informative to the programmer. It could be that its just failing to run the conversion program. Just my guess. Cheers, Brian On Tue, Feb 19, 2013 at 2:47 PM, Alex <[email protected]> wrote: > Hi there, > > I'm using ComputeCanada's TPP resource to run some of my data. I have run > TPP on my desktop, but processing times have been an issues, so I decided > to try ComputeCanadas TPP web interface version via WestGrids Bugaboo > server. I've managed to upload my files, but when I start trying the mzML > conversion of RAW files I get the following error: > > Error Found!NOCMDFILE: Cannot open /var/www/SSL/tpp/tmp/cmd_QF85GD8C7 for > writing: No such file or directory > > Does anybody know what this means and how to continue from here??? If > anybody has used this cluster before, can you send me your contact info?? I > guess I need some tips to start moving on from this spot. > > Thanks! > > Alejandro > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/spctools-discuss?hl=en. > For more options, visit https://groups.google.com/groups/opt_out. > > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss?hl=en. For more options, visit https://groups.google.com/groups/opt_out.
