Hi Alex, while I haven't run tpp on the bugaboo cluster I am currently working with WestGrid to install the TPP on a second cluster (orcinus), though it is not fully running yet.
While the error message indicates that you might have permission problems (tpp most likely is not allowed to create the file at the specified location) I agree with Brian and don't think that the tpp on bugaboo can perform raw to mzml conversion (as it's running linux). If you keep getting errors after you upload the converted mzML I would recommend to get in touch with the guys at westgrid ( [email protected], I think Ata takes care of Joffre, the server running the tpp you are using). Philipp On 19.02.2013, at 12:03, Alex wrote: > Brian, thanks! I was hoping the cluster would be useful to accelerate all the > processes :-( > I'll upload a mzML and see what happens, cheers > > Alex > > On Tuesday, 19 February 2013 15:57:31 UTC-4, Brian Hampton wrote: > Hi Alex, > > I can't help with the cluster issue per se. However, from the directory > structure it appears its running some version of Linux. It is my > understanding that the utilities that convert RAW files to mzML or mzXML > require a windows environment. You might consider using MSConvert on your > local machine to generate your mzML files and upload them as your starting > point in the pipeline. > > Many times error messages are only informative to the programmer. It could > be that its just failing to run the conversion program. Just my guess. > > Cheers, > > Brian > > > On Tue, Feb 19, 2013 at 2:47 PM, Alex <[email protected]> wrote: > Hi there, > > I'm using ComputeCanada's TPP resource to run some of my data. I have run TPP > on my desktop, but processing times have been an issues, so I decided to try > ComputeCanadas TPP web interface version via WestGrids Bugaboo server. I've > managed to upload my files, but when I start trying the mzML conversion of > RAW files I get the following error: > > Error Found! > > NOCMDFILE: Cannot open /var/www/SSL/tpp/tmp/cmd_QF85GD8C7 for writing: No > such file or directory > > Does anybody know what this means and how to continue from here??? If anybody > has used this cluster before, can you send me your contact info?? I guess I > need some tips to start moving on from this spot. > > Thanks! > > Alejandro > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/spctools-discuss?hl=en. > For more options, visit https://groups.google.com/groups/opt_out. > > > > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/spctools-discuss?hl=en. > For more options, visit https://groups.google.com/groups/opt_out. > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss?hl=en. For more options, visit https://groups.google.com/groups/opt_out.
