Thank you Luis; For the conf file it seems I have confused so I made some tweaking in the apache conf file. So thank you for warning I will try again for timeout change in that file. I also did the apache restart. As for the linux I tried to install on a linux mint 18 with the instructions on the link you suggested as well. Linux Mint is basically an ubuntu variant. But I will give it another shot by installing ubuntu 16.04. I am more comfortable with linux.
Thank you very much again. Volkan. 9 Şubat 2018 Cuma 16:33:06 UTC-5 tarihinde Luis yazdı: > > Hi Volkan, > In Windows you will want to edit this file: C:\TPP\conf\httpd-tpp.conf . > > Look for this line, and change the timeout to the desired number of > seconds: > > Timeout *18000* > > Please note that you will need to *restart *the Apache webserver for any > changes to take effect. > > You could also write batch files for Windows. > > As for Linux, which version did you try installing? We have a page with > updated instructions at: > > http://tools.proteomecenter.org/wiki/index.php?title=TPP_5.1.0:_Installing_on_Ubuntu_16.04_LTS > > It is worth mentioning that the Linux version of the interface is not > hampered by the webserver timeout. > > Cheers, > --Luis > > > > > On Fri, Feb 9, 2018 at 12:48 PM, Volkix <[email protected] <javascript:>> > wrote: > >> Hi Luis, >> >> I also thought it is a webserver timeout issue. I tried to increase that >> value but didn't work. May be I couldn't put correct things in the conf >> file. Is there any conf file template to avaid server timeout issue. >> >> So I also couldn't install the server on the linux so it is on windows. I >> think I will try to install tpp on linux without petunia and try to work >> with batch scripts. >> Thank you. >> Volkan. >> >> 9 Şubat 2018 Cuma 15:29:52 UTC-5 tarihinde Luis yazdı: >>> >>> Hi Volkan, >>> >>> This may be a webserver timeout issue; how long do the searches run >>> before they seem to stop? >>> >>> The easiest workaround is to simply run in batches of 5-10 files. >>> Another option is to set the webserver timeout to a longer value. And yet >>> another is to write a script that will do your searches in batch mode, >>> especially if you expect to do this sort of high-volume search regularly. >>> >>> Are you running on Windows or Linux? >>> >>> --Luis >>> >>> >>> >>> On Fri, Feb 9, 2018 at 11:54 AM, Volkix <[email protected]> wrote: >>> >>>> Hi all, >>>> >>>> I have a couple hundreds of raw data to be analyzed. Using the petunia >>>> UI, I convert the files into x(z)ml formats without any problems. when it >>>> comes to X!tandem search analysis goes for 5-15(at most) files and then >>>> stops. Petunia says there is a running job however windows task manager >>>> shows no sign of X!tandem as a process. is this a known problem and/or is >>>> there a workaround about this. >>>> >>>> Best >>>> Volkan >>>> >>>> -- >>>> You received this message because you are subscribed to the Google >>>> Groups "spctools-discuss" group. >>>> To unsubscribe from this group and stop receiving emails from it, send >>>> an email to [email protected]. >>>> To post to this group, send email to [email protected]. >>>> Visit this group at https://groups.google.com/group/spctools-discuss. >>>> For more options, visit https://groups.google.com/d/optout. >>>> >>> >>> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected] <javascript:>. >> To post to this group, send email to [email protected] >> <javascript:>. >> Visit this group at https://groups.google.com/group/spctools-discuss. >> For more options, visit https://groups.google.com/d/optout. >> > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
