Great! Thanks for the update and glad that it works. --Luis
On Mon, Feb 12, 2018 at 9:48 AM, Volkix <[email protected]> wrote: > Hi again, > > As Luis suggested it turned out to be a server timeout issue and solved as > Luis guided. I also installed the ubuntu 16.04 and TPP on it. There is a > problem with file permissions so petunia cant reach some folders/files. I > didnt want to spend some more time on it and windows works fine right now. > > Thanks again. > Volkan. > > 9 Şubat 2018 Cuma 18:46:58 UTC-5 tarihinde Volkix yazdı: > >> Thank you Luis; >> >> For the conf file it seems I have confused so I made some tweaking in the >> apache conf file. So thank you for warning I will try again for timeout >> change in that file. I also did the apache restart. As for the linux I >> tried to install on a linux mint 18 with the instructions on the link you >> suggested as well. Linux Mint is basically an ubuntu variant. But I will >> give it another shot by installing ubuntu 16.04. I am more comfortable with >> linux. >> >> Thank you very much again. >> >> Volkan. >> >> 9 Şubat 2018 Cuma 16:33:06 UTC-5 tarihinde Luis yazdı: >>> >>> Hi Volkan, >>> In Windows you will want to edit this file: C:\TPP\conf\httpd-tpp.conf >>> . >>> >>> Look for this line, and change the timeout to the desired number of >>> seconds: >>> >>> Timeout *18000* >>> >>> Please note that you will need to *restart *the Apache webserver for >>> any changes to take effect. >>> >>> You could also write batch files for Windows. >>> >>> As for Linux, which version did you try installing? We have a page with >>> updated instructions at: >>> http://tools.proteomecenter.org/wiki/index.php?title=TPP_5. >>> 1.0:_Installing_on_Ubuntu_16.04_LTS >>> >>> It is worth mentioning that the Linux version of the interface is not >>> hampered by the webserver timeout. >>> >>> Cheers, >>> --Luis >>> >>> >>> >>> >>> On Fri, Feb 9, 2018 at 12:48 PM, Volkix <[email protected]> wrote: >>> >>>> Hi Luis, >>>> >>>> I also thought it is a webserver timeout issue. I tried to increase >>>> that value but didn't work. May be I couldn't put correct things in the >>>> conf file. Is there any conf file template to avaid server timeout issue. >>>> >>>> So I also couldn't install the server on the linux so it is on windows. >>>> I think I will try to install tpp on linux without petunia and try to work >>>> with batch scripts. >>>> Thank you. >>>> Volkan. >>>> >>>> 9 Şubat 2018 Cuma 15:29:52 UTC-5 tarihinde Luis yazdı: >>>>> >>>>> Hi Volkan, >>>>> >>>>> This may be a webserver timeout issue; how long do the searches run >>>>> before they seem to stop? >>>>> >>>>> The easiest workaround is to simply run in batches of 5-10 files. >>>>> Another option is to set the webserver timeout to a longer value. And yet >>>>> another is to write a script that will do your searches in batch mode, >>>>> especially if you expect to do this sort of high-volume search regularly. >>>>> >>>>> Are you running on Windows or Linux? >>>>> >>>>> --Luis >>>>> >>>>> >>>>> >>>>> On Fri, Feb 9, 2018 at 11:54 AM, Volkix <[email protected]> wrote: >>>>> >>>>>> Hi all, >>>>>> >>>>>> I have a couple hundreds of raw data to be analyzed. Using the >>>>>> petunia UI, I convert the files into x(z)ml formats without any problems. >>>>>> when it comes to X!tandem search analysis goes for 5-15(at most) files >>>>>> and >>>>>> then stops. Petunia says there is a running job however windows task >>>>>> manager shows no sign of X!tandem as a process. is this a known problem >>>>>> and/or is there a workaround about this. >>>>>> >>>>>> Best >>>>>> Volkan >>>>>> >>>>>> -- >>>>>> You received this message because you are subscribed to the Google >>>>>> Groups "spctools-discuss" group. >>>>>> To unsubscribe from this group and stop receiving emails from it, >>>>>> send an email to [email protected]. >>>>>> To post to this group, send email to [email protected]. >>>>>> Visit this group at https://groups.google.com/group/spctools-discuss. >>>>>> For more options, visit https://groups.google.com/d/optout. >>>>>> >>>>> >>>>> -- >>>> You received this message because you are subscribed to the Google >>>> Groups "spctools-discuss" group. >>>> To unsubscribe from this group and stop receiving emails from it, send >>>> an email to [email protected]. >>>> To post to this group, send email to [email protected]. >>>> Visit this group at https://groups.google.com/group/spctools-discuss. >>>> For more options, visit https://groups.google.com/d/optout. >>>> >>> >>> -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at https://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. 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