Hi again, As Luis suggested it turned out to be a server timeout issue and solved as Luis guided. I also installed the ubuntu 16.04 and TPP on it. There is a problem with file permissions so petunia cant reach some folders/files. I didnt want to spend some more time on it and windows works fine right now.
Thanks again. Volkan. 9 Şubat 2018 Cuma 18:46:58 UTC-5 tarihinde Volkix yazdı: > > Thank you Luis; > > For the conf file it seems I have confused so I made some tweaking in the > apache conf file. So thank you for warning I will try again for timeout > change in that file. I also did the apache restart. As for the linux I > tried to install on a linux mint 18 with the instructions on the link you > suggested as well. Linux Mint is basically an ubuntu variant. But I will > give it another shot by installing ubuntu 16.04. I am more comfortable with > linux. > > Thank you very much again. > > Volkan. > > 9 Şubat 2018 Cuma 16:33:06 UTC-5 tarihinde Luis yazdı: >> >> Hi Volkan, >> In Windows you will want to edit this file: C:\TPP\conf\httpd-tpp.conf . >> >> Look for this line, and change the timeout to the desired number of >> seconds: >> >> Timeout *18000* >> >> Please note that you will need to *restart *the Apache webserver for any >> changes to take effect. >> >> You could also write batch files for Windows. >> >> As for Linux, which version did you try installing? We have a page with >> updated instructions at: >> >> http://tools.proteomecenter.org/wiki/index.php?title=TPP_5.1.0:_Installing_on_Ubuntu_16.04_LTS >> >> It is worth mentioning that the Linux version of the interface is not >> hampered by the webserver timeout. >> >> Cheers, >> --Luis >> >> >> >> >> On Fri, Feb 9, 2018 at 12:48 PM, Volkix <[email protected]> wrote: >> >>> Hi Luis, >>> >>> I also thought it is a webserver timeout issue. I tried to increase that >>> value but didn't work. May be I couldn't put correct things in the conf >>> file. Is there any conf file template to avaid server timeout issue. >>> >>> So I also couldn't install the server on the linux so it is on windows. >>> I think I will try to install tpp on linux without petunia and try to work >>> with batch scripts. >>> Thank you. >>> Volkan. >>> >>> 9 Şubat 2018 Cuma 15:29:52 UTC-5 tarihinde Luis yazdı: >>>> >>>> Hi Volkan, >>>> >>>> This may be a webserver timeout issue; how long do the searches run >>>> before they seem to stop? >>>> >>>> The easiest workaround is to simply run in batches of 5-10 files. >>>> Another option is to set the webserver timeout to a longer value. And yet >>>> another is to write a script that will do your searches in batch mode, >>>> especially if you expect to do this sort of high-volume search regularly. >>>> >>>> Are you running on Windows or Linux? >>>> >>>> --Luis >>>> >>>> >>>> >>>> On Fri, Feb 9, 2018 at 11:54 AM, Volkix <[email protected]> wrote: >>>> >>>>> Hi all, >>>>> >>>>> I have a couple hundreds of raw data to be analyzed. Using the petunia >>>>> UI, I convert the files into x(z)ml formats without any problems. when it >>>>> comes to X!tandem search analysis goes for 5-15(at most) files and then >>>>> stops. Petunia says there is a running job however windows task manager >>>>> shows no sign of X!tandem as a process. is this a known problem and/or is >>>>> there a workaround about this. >>>>> >>>>> Best >>>>> Volkan >>>>> >>>>> -- >>>>> You received this message because you are subscribed to the Google >>>>> Groups "spctools-discuss" group. >>>>> To unsubscribe from this group and stop receiving emails from it, send >>>>> an email to [email protected]. >>>>> To post to this group, send email to [email protected]. >>>>> Visit this group at https://groups.google.com/group/spctools-discuss. >>>>> For more options, visit https://groups.google.com/d/optout. >>>>> >>>> >>>> -- >>> You received this message because you are subscribed to the Google >>> Groups "spctools-discuss" group. >>> To unsubscribe from this group and stop receiving emails from it, send >>> an email to [email protected]. >>> To post to this group, send email to [email protected]. >>> Visit this group at https://groups.google.com/group/spctools-discuss. >>> For more options, visit https://groups.google.com/d/optout. >>> >> >> -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
