2016-03-09 18:20 GMT-07:00 Tiago Espinosa <[email protected]>: > Log of './build.sh --prefix /home/u/espinosa/test/ --dev tools csg > -DFFTW3_LIBRARY=/opt/local/intel/fftw-3.3.3/lib/libfftw3.so > -DFFTW3_INCLUDE_DIR=/opt/local/intel/fftw-3.3.3/include/ -DWITH_SQLITE3=NO > -DGROMACS_INCLUDE_DIR=/opt/local/gromacs-4.5.4/include/ > -DGROMACS_LIBRARY=/opt/local/gromacs-4.5.4/lib/libgmx.so > -DBoost_FILESYSTEM_LIBRARY=/usr/lib64/libboost_filesystem.so --log > build.log' > > ^[[32;01mThis is VOTCA build.sh, version 1.9.7^[[0m > > Install prefix is '/home/u/espinosa/test/' > > ^[[34;01mUsing 49 jobs for make^[[0m > > ^[[32;01mWorking on tools^[[0m > > ^[[34;01mSource dir (tools) is already there - skipping checkout^[[0m > > ^[[34;01mcmake -DCMAKE_INSTALL_PREFIX='/home/u/espinosa/test/' > -DFFTW3_LIBRARY=/opt/local/intel/fftw-3.3.3/lib/libfftw3.so > -DFFTW3_INCLUDE_DIR=/opt/local/intel/fftw-3.3.3/include/ -DWITH_SQLITE3=NO > -DGROMACS_INCLUDE_DIR=/opt/local/gromacs-4.5.4/include/ > -DGROMACS_LIBRARY=/opt/local/gromacs-4.5.4/lib/libgmx.so > -DBoost_FILESYSTEM_LIBRARY=/usr/lib64/libboost_filesystem.so > -DCMAKE_INSTALL_RPATH_USE_LINK_PATH=ON .^[[0m > > -- Found Git: /opt/local/bin/git (found version "1.8.4-rc0") > > -- Looking for include file pthread.h > > -- Looking for include file pthread.h - found > > -- Looking for pthread_create > > -- Looking for pthread_create - not found > > -- Looking for pthread_create in pthreads > > -- Looking for pthread_create in pthreads - found Something is strange right here. At this point cmake is suppose to check for boost (program_options, filesystem, system), which it didn't! Can you drop the -DBoost_FILESYSTEM_LIBRARY=/usr/lib64/libboost_filesystem.so option, it is pointless as /usr/lib64 is part of the default search paths.
Which version of cmake are you using (see cmake --version)? You will need at least 2.8.11 for votca-csg. Christoph > > -- Found Threads: TRUE > > -- Looking for assert.h > > -- Looking for assert.h - found > > -- Looking for math.h > > -- Looking for math.h - found > > -- Looking for stdio.h > > -- Looking for stdio.h - found > > -- Looking for stdlib.h > > -- Looking for stdlib.h - found > > -- Looking for string.h > > -- Looking for string.h - found > > -- Looking for C++ include cmath > > -- Looking for C++ include cmath - found > > -- Looking for C++ include fstream > > -- Looking for C++ include fstream - found > > -- Looking for C++ include functional > > -- Looking for C++ include functional - found > > -- Looking for C++ include iostream > > -- Looking for C++ include iostream - found > > -- Looking for C++ include limits > > -- Looking for C++ include limits - found > > -- Looking for C++ include list > > -- Looking for C++ include list - found > > -- Looking for C++ include map > > -- Looking for C++ include map - found > > -- Looking for C++ include ostream > > -- Looking for C++ include ostream - found > > -- Looking for C++ include sstream > > -- Looking for C++ include sstream - found > > -- Looking for C++ include stack > > -- Looking for C++ include stack - found > > -- Looking for C++ include stdexcept > > -- Looking for C++ include stdexcept - found > > -- Looking for C++ include string > > -- Looking for C++ include string - found > > -- Looking for C++ include vector > > -- Looking for C++ include vector - found > > -- Looking for sqrt in m > > -- Looking for sqrt in m - found > > -- Found PkgConfig: /usr/bin/pkg-config (found version "0.23") > > -- checking for module 'expat' > > -- package 'expat' not found > > -- Found EXPAT: /usr/lib64/libexpat.so > > -- checking for module 'fftw3' > > -- package 'fftw3' not found > > -- Found FFTW3: /opt/local/intel/fftw-3.3.3/lib/libfftw3.so > > -- Looking for fftw_plan_r2r_1d in > /opt/local/intel/fftw-3.3.3/lib/libfftw3.so;m > > -- Looking for fftw_plan_r2r_1d in > /opt/local/intel/fftw-3.3.3/lib/libfftw3.so;m - found > > -- checking for module 'gsl' > > -- found gsl, version 1.11 > > -- Found GSL: /usr/lib64/libgsl.so > > -- Looking for gsl_linalg_QR_decomp in /usr/lib64/libgsl.so;m > > -- Looking for gsl_linalg_QR_decomp in /usr/lib64/libgsl.so;m - found > > -- Intel(R) MKL was found: > > MKL_INCLUDE_DIRS: /opt/intel/composerxe-2011.0.084/mkl/include > > MKL_LIBRARY_DIRS: > /opt/intel/composerxe-2011.0.084/mkl/lib/intel64;/opt/intel/composerxe-2011.0.084/compiler/lib/intel64 > > MKL_LIBRARIES: > /opt/intel/composerxe-2011.0.084/mkl/lib/intel64/libmkl_rt.so;/opt/intel/composerxe-2011.0.084/compiler/lib/intel64/libiomp5.so;/opt/intel/composerxe-2011.0.084/compiler/lib/intel64/libimf.so > > -- Performing Test HAVE_AIX > > -- Performing Test HAVE_AIX - Failed > > -- Found Doxygen: /usr/bin/doxygen (found version "1.5.6") > > -- Configuring incomplete, errors occurred! > > See also "/home/u/espinosa/test/src/tools/CMakeFiles/CMakeOutput.log". > > See also "/home/u/espinosa/test/src/tools/CMakeFiles/CMakeError.log". > > -- > You received this message because you are subscribed to the Google Groups > "votca" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at https://groups.google.com/group/votca. > For more options, visit https://groups.google.com/d/optout. -- Christoph Junghans Web: http://www.compphys.de -- You received this message because you are subscribed to the Google Groups "votca" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/votca. For more options, visit https://groups.google.com/d/optout.
