2016-03-09 21:02 GMT-07:00 Tiago Espinosa <[email protected]>: > OK, now I change CMakeList.txt: > > cmake_minimum_required(VERSION 2.8.11) > find_package(Boost 1.36.0 REQUIRED COMPONENTS program_options > > version on cluster is 1.36.0 Ok, I see, I guess that is why cmake fails. However, Boost 1.36.0 is from 2008 and completely untested with VOTCA, I am not sure that will work. You might need to update your boost.
> > and with these changes the process go a head a little bit more: > > Log of './build.sh --prefix /home/u/espinosa/test/ --dev tools csg > -DFFTW3_LIBRARY=/opt/local/intel/fftw-3.3.3/lib/libfftw3.so > -DFFTW3_INCLUDE_DIR=/opt/local/intel/fftw-3.3.3/include/ -DWITH_SQLITE3=NO > -DGROMACS_INCLUDE_DIR=/opt/local/gromacs-4.5.4/include/ > -DGROMACS_LIBRARY=/opt/local/gromacs-4.5.4/lib/libgmx.so > -DBoost_FILESYSTEM_LIBRARY=/usr/lib64/libboost_filesystem.so --log build.log > -DVOTCA_TOOLS_LIBRARY=/home/u/espinosa/test/lib/libvotca_tools.so.4' > > ^[[32;01mThis is VOTCA build.sh, version 1.9.7^[[0m > > Install prefix is '/home/u/espinosa/test/' > > ^[[34;01mUsing 49 jobs for make^[[0m > > ^[[34;01msourcing '/home/u/espinosa/test//bin/VOTCARC.bash'^[[0m > > ^[[32;01mWorking on tools^[[0m > > ^[[34;01mSource dir (tools) is already there - skipping checkout^[[0m > > ^[[34;01mcmake -DCMAKE_INSTALL_PREFIX='/home/u/espinosa/test/' > -DFFTW3_LIBRARY=/opt/local/intel/fftw-3.3.3/lib/libfftw3.so > -DFFTW3_INCLUDE_DIR=/opt/local/intel/fftw-3.3.3/include/ -DWITH_SQLITE3=NO > -DGROMACS_INCLUDE_DIR=/opt/local/gromacs-4.5.4/include/ > -DGROMACS_LIBRARY=/opt/local/gromacs-4.5.4/lib/libgmx.so > -DBoost_FILESYSTEM_LIBRARY=/usr/lib64/libboost_filesystem.so > -DVOTCA_TOOLS_LIBRARY=/home/u/espinosa/test/lib/libvotca_tools.so.4 > -DCMAKE_INSTALL_RPATH_USE_LINK_PATH=ON .^[[0m > > -- Found Git: /opt/local/bin/git (found version "1.8.4-rc0") > > -- Looking for include file pthread.h > > -- Looking for include file pthread.h - found > > -- Looking for pthread_create > > -- Looking for pthread_create - not found > > -- Looking for pthread_create in pthreads > > -- Looking for pthread_create in pthreads - found > > -- Found Threads: TRUE > > -- Boost version: 1.36.0 > > -- Found the following Boost libraries: > > -- program_options > > -- filesystem > > -- system > > -- Looking for assert.h > > -- Looking for assert.h - found > > -- Looking for math.h > > -- Looking for math.h - found > > -- Looking for stdio.h > > -- Looking for stdio.h - found > > -- Looking for stdlib.h > > -- Looking for stdlib.h - found > > -- Looking for string.h > > -- Looking for string.h - found > > -- Looking for C++ include cmath > > -- Looking for C++ include cmath - found > > -- Looking for C++ include fstream > > -- Looking for C++ include fstream - found > > -- Looking for C++ include functional > > -- Looking for C++ include functional - found > > -- Looking for C++ include iostream > > -- Looking for C++ include iostream - found > > -- Looking for C++ include limits > > -- Looking for C++ include limits - found > > -- Looking for C++ include list > > -- Looking for C++ include list - found > > -- Looking for C++ include map > > -- Looking for C++ include map - found > > -- Looking for C++ include ostream > > -- Looking for C++ include ostream - found > > -- Looking for C++ include sstream > > -- Looking for C++ include sstream - found > > -- Looking for C++ include stack > > -- Looking for C++ include stack - found > > -- Looking for C++ include stdexcept > > -- Looking for C++ include stdexcept - found > > -- Looking for C++ include string > > -- Looking for C++ include string - found > > -- Looking for C++ include vector > > -- Looking for C++ include vector - found > > -- Looking for sqrt in m > > -- Looking for sqrt in m - found > > -- Found PkgConfig: /usr/bin/pkg-config (found version "0.23") > > -- checking for module 'expat' > > -- package 'expat' not found > > -- Found EXPAT: /usr/lib64/libexpat.so > > -- checking for module 'fftw3' > > -- package 'fftw3' not found > > -- Found FFTW3: /opt/local/intel/fftw-3.3.3/lib/libfftw3.so > > -- Looking for fftw_plan_r2r_1d in > /opt/local/intel/fftw-3.3.3/lib/libfftw3.so;m > > -- Looking for fftw_plan_r2r_1d in > /opt/local/intel/fftw-3.3.3/lib/libfftw3.so;m - found > > -- checking for module 'gsl' > > -- found gsl, version 1.11 > > -- Found GSL: /usr/lib64/libgsl.so > > -- Looking for gsl_linalg_QR_decomp in /usr/lib64/libgsl.so;m > > -- Looking for gsl_linalg_QR_decomp in /usr/lib64/libgsl.so;m - found > > -- Intel(R) MKL was found: > > MKL_INCLUDE_DIRS: /opt/intel/composerxe-2011.0.084/mkl/include > > MKL_LIBRARY_DIRS: > /opt/intel/composerxe-2011.0.084/mkl/lib/intel64;/opt/intel/composerxe-2011.0.084/compiler/lib/intel64 > > MKL_LIBRARIES: > /opt/intel/composerxe-2011.0.084/mkl/lib/intel64/libmkl_rt.so;/opt/intel/composerxe-2011.0.084/compiler/lib/intel64/libiomp5.so;/opt/intel/composerxe-2011.0.084/compiler/lib/intel64/libimf.so > > -- Performing Test HAVE_AIX > > -- Performing Test HAVE_AIX - Failed > > -- Found Doxygen: /usr/bin/doxygen (found version "1.5.6") > > -- Configuring done > > -- Generating done > > -- Build files have been written to: /home/u/espinosa/test/src/tools > > ^[[32;01mcleaning tools^[[0m > > ^[[32;01mbuidling tools^[[0m > > [ 0%] Built target votca_tools_manpages > > [ 0%] Built target gitversion > > Scanning dependencies of target votca_tools > > [ 15%] [ 15%] [ 18%] [ 21%] [ 24%] [ 27%] [ 27%] [ 33%] [ 33%] [ 36%] [ 36%] > [ 36%] [ 39%] [ 42%] [ 48%] [ 48%] [ 51%] [ 54%] [ 57%] Building CXX object > src/libtools/CMakeFiles/votca_tools.dir/akimaspline.cc.o > > Building CXX object > src/libtools/CMakeFiles/votca_tools.dir/crosscorrelate.cc.o > > [ 60%] [ 63%] [ 69%] [ 69%] [ 72%] Building CXX object > src/libtools/CMakeFiles/votca_tools.dir/version.cc.o > > [ 75%] Building CXX object > src/libtools/CMakeFiles/votca_tools.dir/table.cc.o > > [ 78%] Building CXX object > src/libtools/CMakeFiles/votca_tools.dir/datacollection.cc.o > > Building CXX object src/libtools/CMakeFiles/votca_tools.dir/histogram.cc.o > > Building CXX object src/libtools/CMakeFiles/votca_tools.dir/linspline.cc.o > > Building CXX object src/libtools/CMakeFiles/votca_tools.dir/cubicspline.cc.o > > [ 81%] Building CXX object > src/libtools/CMakeFiles/votca_tools.dir/parsexml.cc.o > > Building CXX object src/libtools/CMakeFiles/votca_tools.dir/mutex.cc.o > > [ 84%] Building CXX object > src/libtools/CMakeFiles/votca_tools.dir/colors.cc.o > > Building CXX object src/libtools/CMakeFiles/votca_tools.dir/tokenizer.cc.o > > Building CXX object src/libtools/CMakeFiles/votca_tools.dir/property.cc.o > > Building CXX object src/libtools/CMakeFiles/votca_tools.dir/spline.cc.o > > [ 87%] Building CXX object > src/libtools/CMakeFiles/votca_tools.dir/application.cc.o > > Building CXX object src/libtools/CMakeFiles/votca_tools.dir/matrix.cc.o > > Building CXX object src/libtools/CMakeFiles/votca_tools.dir/linalg.cc.o > > Building CXX object src/libtools/CMakeFiles/votca_tools.dir/parcer.cc.o > > Building CXX object > src/libtools/CMakeFiles/votca_tools.dir/linalg/gsl/invert.cc.o > > Building CXX object src/libtools/CMakeFiles/votca_tools.dir/correlate.cc.o > > Building CXX object src/libtools/CMakeFiles/votca_tools.dir/random.cc.o > > Building CXX object > src/libtools/CMakeFiles/votca_tools.dir/linalg/gsl/eigensystems.cc.o > > Building CXX object src/libtools/CMakeFiles/votca_tools.dir/globals.cc.o > > Building CXX object src/libtools/CMakeFiles/votca_tools.dir/random2.cc.o > > Building CXX object src/libtools/CMakeFiles/votca_tools.dir/thread.cc.o > > Building CXX object > src/libtools/CMakeFiles/votca_tools.dir/linalg/gsl/svd.cc.o > > Building CXX object > src/libtools/CMakeFiles/votca_tools.dir/linalg/gsl/qrsolve.cc.o > > Building CXX object > src/libtools/CMakeFiles/votca_tools.dir/histogramnew.cc.o > > [ 90%] [ 93%] Building CXX object > src/libtools/CMakeFiles/votca_tools.dir/propertyiomanipulator.cc.o > > Building CXX object src/libtools/CMakeFiles/votca_tools.dir/rangeparser.cc.o > > Building CXX object > src/libtools/CMakeFiles/votca_tools.dir/linalg/gsl/cholesky.cc.o > > Linking CXX shared library libvotca_tools.so > > [ 93%] Built target votca_tools > > [ 96%] Building CXX object > src/tools/CMakeFiles/votca_property.dir/votca_property.cc.o > > Linking CXX executable votca_property > > [ 96%] Built target votca_property > > [100%] Building votca_property manpage > > [100%] Built target votca_property_manpage > > Scanning dependencies of target manpages > > [100%] Built target manpages > > ^[[32;01minstalling tools^[[0m > > [ 0%] Built target votca_tools_manpages > > [ 0%] Built target gitversion > > [ 93%] Built target votca_tools > > [ 96%] Built target votca_property > > [100%] Built target votca_property_manpage > > [100%] Built target manpages > > Linking CXX executable CMakeFiles/CMakeRelink.dir/votca_property > > Linking CXX shared library CMakeFiles/CMakeRelink.dir/libvotca_tools.so > > Install the project... > > -- Install configuration: "Release" > > -- Installing: /home/u/espinosa/test/lib/libvotca_tools.so.4 > > -- Up-to-date: /home/u/espinosa/test/lib/libvotca_tools.so > > -- Up-to-date: /home/u/espinosa/test/lib/pkgconfig/libvotca_tools.pc > > -- Installing: /home/u/espinosa/test/bin/votca_property > > -- Installing: /home/u/espinosa/test/share/man/man1/votca_property.1 > > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/property.h > > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/thread.h > > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/histogramnew.h > > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/random2.h > > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/matrix.h > > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/akimaspline.h > > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/constants.h > > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/parsexml.h > > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/linalg.h > > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/version.h > > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/datacollection.h > > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/objectfactory.h > > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/mutex.h > > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/colors.h > > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/linspline.h > > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/calculator.h > > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/rangeparser.h > > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/crosscorrelate.h > > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/vec.h > > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/tokenizer.h > > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/application.h > > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/cubicspline.h > > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/table.h > > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/getline.h > > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/lexical_cast.h > > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/globals.h > > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/types.h > > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/spline.h > > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/average.h > > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/histogram.h > > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/random.h > > -- Up-to-date: > /home/u/espinosa/test/include/votca/tools/propertyiomanipulator.h > > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/correlate.h > > -- Up-to-date: /home/u/espinosa/test/bin/VOTCARC.csh > > -- Up-to-date: /home/u/espinosa/test/bin/VOTCARC.bash > > -- Up-to-date: /home/u/espinosa/test/share/man/man7/votca-tools.7 > > ^[[32;01mdone with tools^[[0m > > ^[[34;01msourcing '/home/u/espinosa/test//bin/VOTCARC.bash'^[[0m > > ^[[32;01mWorking on csg^[[0m > > ^[[34;01mSource dir (csg) is already there - skipping checkout^[[0m > > ^[[34;01mcmake -DCMAKE_INSTALL_PREFIX='/home/u/espinosa/test/' > -DFFTW3_LIBRARY=/opt/local/intel/fftw-3.3.3/lib/libfftw3.so > -DFFTW3_INCLUDE_DIR=/opt/local/intel/fftw-3.3.3/include/ -DWITH_SQLITE3=NO > -DGROMACS_INCLUDE_DIR=/opt/local/gromacs-4.5.4/include/ > -DGROMACS_LIBRARY=/opt/local/gromacs-4.5.4/lib/libgmx.so > -DBoost_FILESYSTEM_LIBRARY=/usr/lib64/libboost_filesystem.so > -DVOTCA_TOOLS_LIBRARY=/home/u/espinosa/test/lib/libvotca_tools.so.4 > -DCMAKE_INSTALL_RPATH_USE_LINK_PATH=ON .^[[0m > > -- Found Git: /opt/local/bin/git (found version "1.8.4-rc0") > > -- Looking for include file pthread.h > > -- Looking for include file pthread.h - found > > -- Looking for pthread_create > > -- Looking for pthread_create - not found > > -- Looking for pthread_create in pthreads > > -- Looking for pthread_create in pthreads - found > > -- Looking for pthread_create in pthreads - found > > -- Found Threads: TRUE > > -- Found TXT2TAGS: /opt/local/bin/txt2tags > > -- Found UnixCommands: /bin/bash > > -- Found PkgConfig: /usr/bin/pkg-config (found version "0.23") > > -- checking for module 'libvotca_tools' > > -- package 'libvotca_tools' not found > > -- Found VOTCA_TOOLS: /home/u/espinosa/test/lib/libvotca_tools.so.4 > > -- Looking for VotcaToolsFromC in > /home/u/espinosa/test/lib/libvotca_tools.so.4 > > -- Looking for VotcaToolsFromC in > /home/u/espinosa/test/lib/libvotca_tools.so.4 - not found > > -- Configuring incomplete, errors occurred! > > See also "/home/u/espinosa/test/src/csg/CMakeFiles/CMakeOutput.log". > > See also "/home/u/espinosa/test/src/csg/CMakeFiles/CMakeError.log". Can you send me that CMakeError.log! Christoph > > > > -- > You received this message because you are subscribed to the Google Groups > "votca" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at https://groups.google.com/group/votca. > For more options, visit https://groups.google.com/d/optout. -- Christoph Junghans Web: http://www.compphys.de -- You received this message because you are subscribed to the Google Groups "votca" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/votca. For more options, visit https://groups.google.com/d/optout.
