2016-03-11 11:03 GMT-07:00 Tiago Espinosa <[email protected]>: > 1) output: > > /home/u/espinosa/test/lib/libvotca_tools.so: /lib64/libc.so.6: version > `GLIBC_2.14' not found (required by > /home/u/espinosa/test/lib/libvotca_tools.so) > > linux-vdso.so.1 => (0x00007fffa159c000) > > libboost_program_options.so.1.54.0 => not found > > libboost_filesystem.so.1.54.0 => not found > > libboost_system.so.1.54.0 => not found That is the problem! Even though you have specified LD_LIBRARY_PATH, is seems it not getting picked up. Is libboost_system.so.1.54.0 in /opt/local/lib? If it is in a different directory, you need to add that to LD_LIBRARY_PATH, too!
> > libgsl.so.0 => /opt/local/lib/libgsl.so.0 (0x00007fdbe15c9000) > > libgslcblas.so.0 => /opt/local/lib/libgslcblas.so.0 (0x00007fdbe1388000) > > libsqlite3.so.0 => /usr/lib64/libsqlite3.so.0 (0x00007fdbe10f6000) > > libfftw3.so.3 => /opt/local/gnu/fftw/lib/libfftw3.so.3 (0x00007fdbe0d71000) > > libexpat.so.1 => /lib64/libexpat.so.1 (0x00007fdbe0b47000) > > libpthread.so.0 => /lib64/libpthread.so.0 (0x00007fdbe092a000) > > libstdc++.so.6 => > /opt/local/gc/lib/gcc/x86_64-cesup-linux/4.8.1/libstdc++.so.6 > (0x00007fdbe061b000) > > libm.so.6 => /lib64/libm.so.6 (0x00007fdbe03c5000) > > libgcc_s.so.1 => > /opt/local/gc/lib/gcc/x86_64-cesup-linux/4.8.1/libgcc_s.so.1 > (0x00007fdbe01af000) > > libc.so.6 => /lib64/libc.so.6 (0x00007fdbdfe50000) > > /lib64/ld-linux-x86-64.so.2 (0x00007fdbe1c87000) > > > 2) yes > > > export LD_LIBRARY_PATH=/opt/local/lib:$LD_LIBRARY_PATH > > > 2016-03-11 14:57 GMT-03:00 Christoph Junghans <[email protected]>: >> >> I saw the following line in the error log: >> /usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../x86_64-suse-linux/bin/ld: >> warni >> ng: libboost_program_options.so.1.54.0, needed by >> /home/u/espinosa/test/lib/libvotca_tools.so, not found (try using >> -rpath or -rpath-link) >> >> My guess is that once you load libvotca_tools.so, cannot be found anymore. >> >> Try two things: >> 1.) Post the output of >> $ ldd /home/u/espinosa/test/lib/libvotca_tools.so >> 2.) Did you have >> $ export LD_LIBRARY_PATH=/opt/local/lib >> already? >> >> Christoph >> >> 2016-03-11 10:48 GMT-07:00 Tiago Espinosa <[email protected]>: >> > command: >> > >> > ./build.sh -DGMX_DOUBLE=OFF -DGMX_GPU=OFF >> > -DBoost_LIBRARY_DIR=/opt/local/lib >> > -DBOOST_INCLUDE_DIR=/opt/local/include/boost >> > -DBoost_LIBRARY=/opt/local/lib/libboost_program_options.so >> > -DGROMACS_INCLUDE_DIR=/home/u/espinosa/test/include/gromacs >> > -DGROMACS_LIBRARY=/home/u/espinosa/test/lib64/libgromacs.so >> > >> > -DVOTCA_TOOLS_LIBRARY='/home/u/espinosa/test/lib/libvotca_tools.so;/home/u/espinosa/test/lib/libvotca_tools.so.3;/home/u/espinosa/test/lib/libvotca_tools.so.4;/home/u/espinosa/test/lib/libmd.so' >> > >> > -DFFTW3_LIBRARY='/opt/local/gnu/fftw/lib/libfftw3f.so;/opt/local/gnu/fftw/lib/libfftw3.so' >> > -DFFTW3_INCLUDE_DIR=/opt/local/gnu/fftw/include >> > -DGSL_LIBRARY='/opt/local/lib/libgsl.so;/opt/local/lib/libgslcblas.so' >> > -DBOOST_ROOT=/opt/local/lib/ --dev tools csg --log build.log >> > >> > >> > Regards >> > >> > >> > Tiago >> > >> > >> > 2016-03-10 14:47 GMT-03:00 Christoph Junghans <[email protected]>: >> >> >> >> At the end it says: >> >> /home/u/espinosa/test/lib/libvotca_tools.so: undefined reference to >> >> `boost::program_options::detail::cmdline::style(int)' >> >> >> >> That means something went wrong when linking. >> >> I guess this might be triggered by a typo in your command. >> >> "-Dboost_LIBRARY=" needs to be "-DBoost_LIBRARY=" (chapitel B) >> >> I thing the easiest way to specify a custom Boost location is >> >> BOOST_ROOT, i.e. -DBOOST_ROOT=/opt/local/ in your case. >> >> >> >> Cheers, >> >> >> >> Christoph >> >> >> >> 2016-03-10 9:56 GMT-07:00 Tiago Espinosa <[email protected]>: >> >> > done! >> >> > >> >> > 2016-03-10 13:41 GMT-03:00 Christoph Junghans <[email protected]>: >> >> >> >> >> >> That looks better, boost got detected correctly! >> >> >> >> >> >> Can you send the CMakeError.log from inside csg >> >> >> (/home/u/espinosa/test/src/csg/CMakeFiles/CMakeError.log)? >> >> >> >> >> >> 2016-03-10 8:12 GMT-07:00 Tiago Espinosa >> >> >> <[email protected]>: >> >> >> > Christoph, I did a new try, with a new boost: >> >> >> > >> >> >> > I did: >> >> >> > >> >> >> > export CC=gcc >> >> >> > >> >> >> > export CXX=g++ >> >> >> > >> >> >> > export F77=gfortran >> >> >> > >> >> >> > export LDFLAGS="-lpthread" >> >> >> > >> >> >> > export INCLUDE=/opt/local/include:$INCLUDE >> >> >> > >> >> >> > export LD_LIBRARY_PATH=/opt/local/lib:$LD_LIBRARY_PATH >> >> >> > >> >> >> > export PREFIX=/home/u/espinosa/test/ >> >> >> > >> >> >> > >> >> >> > ./build.sh -DGMX_DOUBLE=OFF -DGMX_GPU=OFF >> >> >> > -DBoost_LIBRARY_DIR=/opt/local/lib >> >> >> > -DBOOST_INCLUDE_DIR=/opt/local/include/boost >> >> >> > -Dboost_LIBRARY=/opt/local/lib/libboost_program_options.so >> >> >> > -DGROMACS_INCLUDE_DIR=${PREFIX}/include/gromacs >> >> >> > -DGROMACS_LIBRARY=${PREFIX}/lib64/libgromacs.so >> >> >> > -DVOTCA_TOOLS_LIBRARY=${PREFIX}/lib/libvotca_tools.so >> >> >> > >> >> >> > >> >> >> > >> >> >> > -DFFTW3_LIBRARY='/opt/local/gnu/fftw/lib/libfftw3f.so;/opt/local/gnu/fftw/lib/libfftw3.so' >> >> >> > -DFFTW3_INCLUDE_DIR=/opt/local/gnu/fftw/include >> >> >> > >> >> >> > >> >> >> > -DGSL_LIBRARY='/opt/local/lib/libgsl.so;/opt/local/lib/libgslcblas.so' >> >> >> > --dev >> >> >> > tools csg --log build.log >> >> >> > >> >> >> > >> >> >> > 2016-03-10 11:46 GMT-03:00 Christoph Junghans >> >> >> > <[email protected]>: >> >> >> >> >> >> >> >> 2016-03-09 21:02 GMT-07:00 Tiago Espinosa >> >> >> >> <[email protected]>: >> >> >> >> > OK, now I change CMakeList.txt: >> >> >> >> > >> >> >> >> > cmake_minimum_required(VERSION 2.8.11) >> >> >> >> > find_package(Boost 1.36.0 REQUIRED COMPONENTS program_options >> >> >> >> > >> >> >> >> > version on cluster is 1.36.0 >> >> >> >> Ok, I see, I guess that is why cmake fails. >> >> >> >> However, Boost 1.36.0 is from 2008 and completely untested with >> >> >> >> VOTCA, >> >> >> >> I am not sure that will work. >> >> >> >> You might need to update your boost. >> >> >> >> >> >> >> >> > >> >> >> >> > and with these changes the process go a head a little bit more: >> >> >> >> > >> >> >> >> > Log of './build.sh --prefix /home/u/espinosa/test/ --dev tools >> >> >> >> > csg >> >> >> >> > -DFFTW3_LIBRARY=/opt/local/intel/fftw-3.3.3/lib/libfftw3.so >> >> >> >> > -DFFTW3_INCLUDE_DIR=/opt/local/intel/fftw-3.3.3/include/ >> >> >> >> > -DWITH_SQLITE3=NO >> >> >> >> > -DGROMACS_INCLUDE_DIR=/opt/local/gromacs-4.5.4/include/ >> >> >> >> > -DGROMACS_LIBRARY=/opt/local/gromacs-4.5.4/lib/libgmx.so >> >> >> >> > -DBoost_FILESYSTEM_LIBRARY=/usr/lib64/libboost_filesystem.so >> >> >> >> > --log >> >> >> >> > build.log >> >> >> >> > >> >> >> >> > >> >> >> >> > -DVOTCA_TOOLS_LIBRARY=/home/u/espinosa/test/lib/libvotca_tools.so.4' >> >> >> >> > >> >> >> >> > ^[[32;01mThis is VOTCA build.sh, version 1.9.7^[[0m >> >> >> >> > >> >> >> >> > Install prefix is '/home/u/espinosa/test/' >> >> >> >> > >> >> >> >> > ^[[34;01mUsing 49 jobs for make^[[0m >> >> >> >> > >> >> >> >> > ^[[34;01msourcing >> >> >> >> > '/home/u/espinosa/test//bin/VOTCARC.bash'^[[0m >> >> >> >> > >> >> >> >> > ^[[32;01mWorking on tools^[[0m >> >> >> >> > >> >> >> >> > ^[[34;01mSource dir (tools) is already there - skipping >> >> >> >> > checkout^[[0m >> >> >> >> > >> >> >> >> > ^[[34;01mcmake -DCMAKE_INSTALL_PREFIX='/home/u/espinosa/test/' >> >> >> >> > -DFFTW3_LIBRARY=/opt/local/intel/fftw-3.3.3/lib/libfftw3.so >> >> >> >> > -DFFTW3_INCLUDE_DIR=/opt/local/intel/fftw-3.3.3/include/ >> >> >> >> > -DWITH_SQLITE3=NO >> >> >> >> > -DGROMACS_INCLUDE_DIR=/opt/local/gromacs-4.5.4/include/ >> >> >> >> > -DGROMACS_LIBRARY=/opt/local/gromacs-4.5.4/lib/libgmx.so >> >> >> >> > -DBoost_FILESYSTEM_LIBRARY=/usr/lib64/libboost_filesystem.so >> >> >> >> > >> >> >> >> > >> >> >> >> > -DVOTCA_TOOLS_LIBRARY=/home/u/espinosa/test/lib/libvotca_tools.so.4 >> >> >> >> > -DCMAKE_INSTALL_RPATH_USE_LINK_PATH=ON .^[[0m >> >> >> >> > >> >> >> >> > -- Found Git: /opt/local/bin/git (found version "1.8.4-rc0") >> >> >> >> > >> >> >> >> > -- Looking for include file pthread.h >> >> >> >> > >> >> >> >> > -- Looking for include file pthread.h - found >> >> >> >> > >> >> >> >> > -- Looking for pthread_create >> >> >> >> > >> >> >> >> > -- Looking for pthread_create - not found >> >> >> >> > >> >> >> >> > -- Looking for pthread_create in pthreads >> >> >> >> > >> >> >> >> > -- Looking for pthread_create in pthreads - found >> >> >> >> > >> >> >> >> > -- Found Threads: TRUE >> >> >> >> > >> >> >> >> > -- Boost version: 1.36.0 >> >> >> >> > >> >> >> >> > -- Found the following Boost libraries: >> >> >> >> > >> >> >> >> > -- program_options >> >> >> >> > >> >> >> >> > -- filesystem >> >> >> >> > >> >> >> >> > -- system >> >> >> >> > >> >> >> >> > -- Looking for assert.h >> >> >> >> > >> >> >> >> > -- Looking for assert.h - found >> >> >> >> > >> >> >> >> > -- Looking for math.h >> >> >> >> > >> >> >> >> > -- Looking for math.h - found >> >> >> >> > >> >> >> >> > -- Looking for stdio.h >> >> >> >> > >> >> >> >> > -- Looking for stdio.h - found >> >> >> >> > >> >> >> >> > -- Looking for stdlib.h >> >> >> >> > >> >> >> >> > -- Looking for stdlib.h - found >> >> >> >> > >> >> >> >> > -- Looking for string.h >> >> >> >> > >> >> >> >> > -- Looking for string.h - found >> >> >> >> > >> >> >> >> > -- Looking for C++ include cmath >> >> >> >> > >> >> >> >> > -- Looking for C++ include cmath - found >> >> >> >> > >> >> >> >> > -- Looking for C++ include fstream >> >> >> >> > >> >> >> >> > -- Looking for C++ include fstream - found >> >> >> >> > >> >> >> >> > -- Looking for C++ include functional >> >> >> >> > >> >> >> >> > -- Looking for C++ include functional - found >> >> >> >> > >> >> >> >> > -- Looking for C++ include iostream >> >> >> >> > >> >> >> >> > -- Looking for C++ include iostream - found >> >> >> >> > >> >> >> >> > -- Looking for C++ include limits >> >> >> >> > >> >> >> >> > -- Looking for C++ include limits - found >> >> >> >> > >> >> >> >> > -- Looking for C++ include list >> >> >> >> > >> >> >> >> > -- Looking for C++ include list - found >> >> >> >> > >> >> >> >> > -- Looking for C++ include map >> >> >> >> > >> >> >> >> > -- Looking for C++ include map - found >> >> >> >> > >> >> >> >> > -- Looking for C++ include ostream >> >> >> >> > >> >> >> >> > -- Looking for C++ include ostream - found >> >> >> >> > >> >> >> >> > -- Looking for C++ include sstream >> >> >> >> > >> >> >> >> > -- Looking for C++ include sstream - found >> >> >> >> > >> >> >> >> > -- Looking for C++ include stack >> >> >> >> > >> >> >> >> > -- Looking for C++ include stack - found >> >> >> >> > >> >> >> >> > -- Looking for C++ include stdexcept >> >> >> >> > >> >> >> >> > -- Looking for C++ include stdexcept - found >> >> >> >> > >> >> >> >> > -- Looking for C++ include string >> >> >> >> > >> >> >> >> > -- Looking for C++ include string - found >> >> >> >> > >> >> >> >> > -- Looking for C++ include vector >> >> >> >> > >> >> >> >> > -- Looking for C++ include vector - found >> >> >> >> > >> >> >> >> > -- Looking for sqrt in m >> >> >> >> > >> >> >> >> > -- Looking for sqrt in m - found >> >> >> >> > >> >> >> >> > -- Found PkgConfig: /usr/bin/pkg-config (found version "0.23") >> >> >> >> > >> >> >> >> > -- checking for module 'expat' >> >> >> >> > >> >> >> >> > -- package 'expat' not found >> >> >> >> > >> >> >> >> > -- Found EXPAT: /usr/lib64/libexpat.so >> >> >> >> > >> >> >> >> > -- checking for module 'fftw3' >> >> >> >> > >> >> >> >> > -- package 'fftw3' not found >> >> >> >> > >> >> >> >> > -- Found FFTW3: /opt/local/intel/fftw-3.3.3/lib/libfftw3.so >> >> >> >> > >> >> >> >> > -- Looking for fftw_plan_r2r_1d in >> >> >> >> > /opt/local/intel/fftw-3.3.3/lib/libfftw3.so;m >> >> >> >> > >> >> >> >> > -- Looking for fftw_plan_r2r_1d in >> >> >> >> > /opt/local/intel/fftw-3.3.3/lib/libfftw3.so;m - found >> >> >> >> > >> >> >> >> > -- checking for module 'gsl' >> >> >> >> > >> >> >> >> > -- found gsl, version 1.11 >> >> >> >> > >> >> >> >> > -- Found GSL: /usr/lib64/libgsl.so >> >> >> >> > >> >> >> >> > -- Looking for gsl_linalg_QR_decomp in /usr/lib64/libgsl.so;m >> >> >> >> > >> >> >> >> > -- Looking for gsl_linalg_QR_decomp in /usr/lib64/libgsl.so;m - >> >> >> >> > found >> >> >> >> > >> >> >> >> > -- Intel(R) MKL was found: >> >> >> >> > >> >> >> >> > MKL_INCLUDE_DIRS: >> >> >> >> > /opt/intel/composerxe-2011.0.084/mkl/include >> >> >> >> > >> >> >> >> > MKL_LIBRARY_DIRS: >> >> >> >> > >> >> >> >> > >> >> >> >> > >> >> >> >> > >> >> >> >> > /opt/intel/composerxe-2011.0.084/mkl/lib/intel64;/opt/intel/composerxe-2011.0.084/compiler/lib/intel64 >> >> >> >> > >> >> >> >> > MKL_LIBRARIES: >> >> >> >> > >> >> >> >> > >> >> >> >> > >> >> >> >> > >> >> >> >> > /opt/intel/composerxe-2011.0.084/mkl/lib/intel64/libmkl_rt.so;/opt/intel/composerxe-2011.0.084/compiler/lib/intel64/libiomp5.so;/opt/intel/composerxe-2011.0.084/compiler/lib/intel64/libimf.so >> >> >> >> > >> >> >> >> > -- Performing Test HAVE_AIX >> >> >> >> > >> >> >> >> > -- Performing Test HAVE_AIX - Failed >> >> >> >> > >> >> >> >> > -- Found Doxygen: /usr/bin/doxygen (found version "1.5.6") >> >> >> >> > >> >> >> >> > -- Configuring done >> >> >> >> > >> >> >> >> > -- Generating done >> >> >> >> > >> >> >> >> > -- Build files have been written to: >> >> >> >> > /home/u/espinosa/test/src/tools >> >> >> >> > >> >> >> >> > ^[[32;01mcleaning tools^[[0m >> >> >> >> > >> >> >> >> > ^[[32;01mbuidling tools^[[0m >> >> >> >> > >> >> >> >> > [ 0%] Built target votca_tools_manpages >> >> >> >> > >> >> >> >> > [ 0%] Built target gitversion >> >> >> >> > >> >> >> >> > Scanning dependencies of target votca_tools >> >> >> >> > >> >> >> >> > [ 15%] [ 15%] [ 18%] [ 21%] [ 24%] [ 27%] [ 27%] [ 33%] [ 33%] >> >> >> >> > [ >> >> >> >> > 36%] >> >> >> >> > [ >> >> >> >> > 36%] >> >> >> >> > [ 36%] [ 39%] [ 42%] [ 48%] [ 48%] [ 51%] [ 54%] [ 57%] >> >> >> >> > Building >> >> >> >> > CXX >> >> >> >> > object >> >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/akimaspline.cc.o >> >> >> >> > >> >> >> >> > Building CXX object >> >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/crosscorrelate.cc.o >> >> >> >> > >> >> >> >> > [ 60%] [ 63%] [ 69%] [ 69%] [ 72%] Building CXX object >> >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/version.cc.o >> >> >> >> > >> >> >> >> > [ 75%] Building CXX object >> >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/table.cc.o >> >> >> >> > >> >> >> >> > [ 78%] Building CXX object >> >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/datacollection.cc.o >> >> >> >> > >> >> >> >> > Building CXX object >> >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/histogram.cc.o >> >> >> >> > >> >> >> >> > Building CXX object >> >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/linspline.cc.o >> >> >> >> > >> >> >> >> > Building CXX object >> >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/cubicspline.cc.o >> >> >> >> > >> >> >> >> > [ 81%] Building CXX object >> >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/parsexml.cc.o >> >> >> >> > >> >> >> >> > Building CXX object >> >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/mutex.cc.o >> >> >> >> > >> >> >> >> > [ 84%] Building CXX object >> >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/colors.cc.o >> >> >> >> > >> >> >> >> > Building CXX object >> >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/tokenizer.cc.o >> >> >> >> > >> >> >> >> > Building CXX object >> >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/property.cc.o >> >> >> >> > >> >> >> >> > Building CXX object >> >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/spline.cc.o >> >> >> >> > >> >> >> >> > [ 87%] Building CXX object >> >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/application.cc.o >> >> >> >> > >> >> >> >> > Building CXX object >> >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/matrix.cc.o >> >> >> >> > >> >> >> >> > Building CXX object >> >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/linalg.cc.o >> >> >> >> > >> >> >> >> > Building CXX object >> >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/parcer.cc.o >> >> >> >> > >> >> >> >> > Building CXX object >> >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/linalg/gsl/invert.cc.o >> >> >> >> > >> >> >> >> > Building CXX object >> >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/correlate.cc.o >> >> >> >> > >> >> >> >> > Building CXX object >> >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/random.cc.o >> >> >> >> > >> >> >> >> > Building CXX object >> >> >> >> > >> >> >> >> > >> >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/linalg/gsl/eigensystems.cc.o >> >> >> >> > >> >> >> >> > Building CXX object >> >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/globals.cc.o >> >> >> >> > >> >> >> >> > Building CXX object >> >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/random2.cc.o >> >> >> >> > >> >> >> >> > Building CXX object >> >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/thread.cc.o >> >> >> >> > >> >> >> >> > Building CXX object >> >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/linalg/gsl/svd.cc.o >> >> >> >> > >> >> >> >> > Building CXX object >> >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/linalg/gsl/qrsolve.cc.o >> >> >> >> > >> >> >> >> > Building CXX object >> >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/histogramnew.cc.o >> >> >> >> > >> >> >> >> > [ 90%] [ 93%] Building CXX object >> >> >> >> > >> >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/propertyiomanipulator.cc.o >> >> >> >> > >> >> >> >> > Building CXX object >> >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/rangeparser.cc.o >> >> >> >> > >> >> >> >> > Building CXX object >> >> >> >> > >> >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/linalg/gsl/cholesky.cc.o >> >> >> >> > >> >> >> >> > Linking CXX shared library libvotca_tools.so >> >> >> >> > >> >> >> >> > [ 93%] Built target votca_tools >> >> >> >> > >> >> >> >> > [ 96%] Building CXX object >> >> >> >> > src/tools/CMakeFiles/votca_property.dir/votca_property.cc.o >> >> >> >> > >> >> >> >> > Linking CXX executable votca_property >> >> >> >> > >> >> >> >> > [ 96%] Built target votca_property >> >> >> >> > >> >> >> >> > [100%] Building votca_property manpage >> >> >> >> > >> >> >> >> > [100%] Built target votca_property_manpage >> >> >> >> > >> >> >> >> > Scanning dependencies of target manpages >> >> >> >> > >> >> >> >> > [100%] Built target manpages >> >> >> >> > >> >> >> >> > ^[[32;01minstalling tools^[[0m >> >> >> >> > >> >> >> >> > [ 0%] Built target votca_tools_manpages >> >> >> >> > >> >> >> >> > [ 0%] Built target gitversion >> >> >> >> > >> >> >> >> > [ 93%] Built target votca_tools >> >> >> >> > >> >> >> >> > [ 96%] Built target votca_property >> >> >> >> > >> >> >> >> > [100%] Built target votca_property_manpage >> >> >> >> > >> >> >> >> > [100%] Built target manpages >> >> >> >> > >> >> >> >> > Linking CXX executable >> >> >> >> > CMakeFiles/CMakeRelink.dir/votca_property >> >> >> >> > >> >> >> >> > Linking CXX shared library >> >> >> >> > CMakeFiles/CMakeRelink.dir/libvotca_tools.so >> >> >> >> > >> >> >> >> > Install the project... >> >> >> >> > >> >> >> >> > -- Install configuration: "Release" >> >> >> >> > >> >> >> >> > -- Installing: /home/u/espinosa/test/lib/libvotca_tools.so.4 >> >> >> >> > >> >> >> >> > -- Up-to-date: /home/u/espinosa/test/lib/libvotca_tools.so >> >> >> >> > >> >> >> >> > -- Up-to-date: >> >> >> >> > /home/u/espinosa/test/lib/pkgconfig/libvotca_tools.pc >> >> >> >> > >> >> >> >> > -- Installing: /home/u/espinosa/test/bin/votca_property >> >> >> >> > >> >> >> >> > -- Installing: >> >> >> >> > /home/u/espinosa/test/share/man/man1/votca_property.1 >> >> >> >> > >> >> >> >> > -- Up-to-date: >> >> >> >> > /home/u/espinosa/test/include/votca/tools/property.h >> >> >> >> > >> >> >> >> > -- Up-to-date: >> >> >> >> > /home/u/espinosa/test/include/votca/tools/thread.h >> >> >> >> > >> >> >> >> > -- Up-to-date: >> >> >> >> > /home/u/espinosa/test/include/votca/tools/histogramnew.h >> >> >> >> > >> >> >> >> > -- Up-to-date: >> >> >> >> > /home/u/espinosa/test/include/votca/tools/random2.h >> >> >> >> > >> >> >> >> > -- Up-to-date: >> >> >> >> > /home/u/espinosa/test/include/votca/tools/matrix.h >> >> >> >> > >> >> >> >> > -- Up-to-date: >> >> >> >> > /home/u/espinosa/test/include/votca/tools/akimaspline.h >> >> >> >> > >> >> >> >> > -- Up-to-date: >> >> >> >> > /home/u/espinosa/test/include/votca/tools/constants.h >> >> >> >> > >> >> >> >> > -- Up-to-date: >> >> >> >> > /home/u/espinosa/test/include/votca/tools/parsexml.h >> >> >> >> > >> >> >> >> > -- Up-to-date: >> >> >> >> > /home/u/espinosa/test/include/votca/tools/linalg.h >> >> >> >> > >> >> >> >> > -- Up-to-date: >> >> >> >> > /home/u/espinosa/test/include/votca/tools/version.h >> >> >> >> > >> >> >> >> > -- Up-to-date: >> >> >> >> > /home/u/espinosa/test/include/votca/tools/datacollection.h >> >> >> >> > >> >> >> >> > -- Up-to-date: >> >> >> >> > /home/u/espinosa/test/include/votca/tools/objectfactory.h >> >> >> >> > >> >> >> >> > -- Up-to-date: >> >> >> >> > /home/u/espinosa/test/include/votca/tools/mutex.h >> >> >> >> > >> >> >> >> > -- Up-to-date: >> >> >> >> > /home/u/espinosa/test/include/votca/tools/colors.h >> >> >> >> > >> >> >> >> > -- Up-to-date: >> >> >> >> > /home/u/espinosa/test/include/votca/tools/linspline.h >> >> >> >> > >> >> >> >> > -- Up-to-date: >> >> >> >> > /home/u/espinosa/test/include/votca/tools/calculator.h >> >> >> >> > >> >> >> >> > -- Up-to-date: >> >> >> >> > /home/u/espinosa/test/include/votca/tools/rangeparser.h >> >> >> >> > >> >> >> >> > -- Up-to-date: >> >> >> >> > /home/u/espinosa/test/include/votca/tools/crosscorrelate.h >> >> >> >> > >> >> >> >> > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/vec.h >> >> >> >> > >> >> >> >> > -- Up-to-date: >> >> >> >> > /home/u/espinosa/test/include/votca/tools/tokenizer.h >> >> >> >> > >> >> >> >> > -- Up-to-date: >> >> >> >> > /home/u/espinosa/test/include/votca/tools/application.h >> >> >> >> > >> >> >> >> > -- Up-to-date: >> >> >> >> > /home/u/espinosa/test/include/votca/tools/cubicspline.h >> >> >> >> > >> >> >> >> > -- Up-to-date: >> >> >> >> > /home/u/espinosa/test/include/votca/tools/table.h >> >> >> >> > >> >> >> >> > -- Up-to-date: >> >> >> >> > /home/u/espinosa/test/include/votca/tools/getline.h >> >> >> >> > >> >> >> >> > -- Up-to-date: >> >> >> >> > /home/u/espinosa/test/include/votca/tools/lexical_cast.h >> >> >> >> > >> >> >> >> > -- Up-to-date: >> >> >> >> > /home/u/espinosa/test/include/votca/tools/globals.h >> >> >> >> > >> >> >> >> > -- Up-to-date: >> >> >> >> > /home/u/espinosa/test/include/votca/tools/types.h >> >> >> >> > >> >> >> >> > -- Up-to-date: >> >> >> >> > /home/u/espinosa/test/include/votca/tools/spline.h >> >> >> >> > >> >> >> >> > -- Up-to-date: >> >> >> >> > /home/u/espinosa/test/include/votca/tools/average.h >> >> >> >> > >> >> >> >> > -- Up-to-date: >> >> >> >> > /home/u/espinosa/test/include/votca/tools/histogram.h >> >> >> >> > >> >> >> >> > -- Up-to-date: >> >> >> >> > /home/u/espinosa/test/include/votca/tools/random.h >> >> >> >> > >> >> >> >> > -- Up-to-date: >> >> >> >> > >> >> >> >> > /home/u/espinosa/test/include/votca/tools/propertyiomanipulator.h >> >> >> >> > >> >> >> >> > -- Up-to-date: >> >> >> >> > /home/u/espinosa/test/include/votca/tools/correlate.h >> >> >> >> > >> >> >> >> > -- Up-to-date: /home/u/espinosa/test/bin/VOTCARC.csh >> >> >> >> > >> >> >> >> > -- Up-to-date: /home/u/espinosa/test/bin/VOTCARC.bash >> >> >> >> > >> >> >> >> > -- Up-to-date: >> >> >> >> > /home/u/espinosa/test/share/man/man7/votca-tools.7 >> >> >> >> > >> >> >> >> > ^[[32;01mdone with tools^[[0m >> >> >> >> > >> >> >> >> > ^[[34;01msourcing >> >> >> >> > '/home/u/espinosa/test//bin/VOTCARC.bash'^[[0m >> >> >> >> > >> >> >> >> > ^[[32;01mWorking on csg^[[0m >> >> >> >> > >> >> >> >> > ^[[34;01mSource dir (csg) is already there - skipping >> >> >> >> > checkout^[[0m >> >> >> >> > >> >> >> >> > ^[[34;01mcmake -DCMAKE_INSTALL_PREFIX='/home/u/espinosa/test/' >> >> >> >> > -DFFTW3_LIBRARY=/opt/local/intel/fftw-3.3.3/lib/libfftw3.so >> >> >> >> > -DFFTW3_INCLUDE_DIR=/opt/local/intel/fftw-3.3.3/include/ >> >> >> >> > -DWITH_SQLITE3=NO >> >> >> >> > -DGROMACS_INCLUDE_DIR=/opt/local/gromacs-4.5.4/include/ >> >> >> >> > -DGROMACS_LIBRARY=/opt/local/gromacs-4.5.4/lib/libgmx.so >> >> >> >> > -DBoost_FILESYSTEM_LIBRARY=/usr/lib64/libboost_filesystem.so >> >> >> >> > >> >> >> >> > >> >> >> >> > -DVOTCA_TOOLS_LIBRARY=/home/u/espinosa/test/lib/libvotca_tools.so.4 >> >> >> >> > -DCMAKE_INSTALL_RPATH_USE_LINK_PATH=ON .^[[0m >> >> >> >> > >> >> >> >> > -- Found Git: /opt/local/bin/git (found version "1.8.4-rc0") >> >> >> >> > >> >> >> >> > -- Looking for include file pthread.h >> >> >> >> > >> >> >> >> > -- Looking for include file pthread.h - found >> >> >> >> > >> >> >> >> > -- Looking for pthread_create >> >> >> >> > >> >> >> >> > -- Looking for pthread_create - not found >> >> >> >> > >> >> >> >> > -- Looking for pthread_create in pthreads >> >> >> >> > >> >> >> >> > -- Looking for pthread_create in pthreads - found >> >> >> >> > >> >> >> >> > -- Looking for pthread_create in pthreads - found >> >> >> >> > >> >> >> >> > -- Found Threads: TRUE >> >> >> >> > >> >> >> >> > -- Found TXT2TAGS: /opt/local/bin/txt2tags >> >> >> >> > >> >> >> >> > -- Found UnixCommands: /bin/bash >> >> >> >> > >> >> >> >> > -- Found PkgConfig: /usr/bin/pkg-config (found version "0.23") >> >> >> >> > >> >> >> >> > -- checking for module 'libvotca_tools' >> >> >> >> > >> >> >> >> > -- package 'libvotca_tools' not found >> >> >> >> > >> >> >> >> > -- Found VOTCA_TOOLS: >> >> >> >> > /home/u/espinosa/test/lib/libvotca_tools.so.4 >> >> >> >> > >> >> >> >> > -- Looking for VotcaToolsFromC in >> >> >> >> > /home/u/espinosa/test/lib/libvotca_tools.so.4 >> >> >> >> > >> >> >> >> > -- Looking for VotcaToolsFromC in >> >> >> >> > /home/u/espinosa/test/lib/libvotca_tools.so.4 - not found >> >> >> >> > >> >> >> >> > -- Configuring incomplete, errors occurred! >> >> >> >> > >> >> >> >> > See also >> >> >> >> > "/home/u/espinosa/test/src/csg/CMakeFiles/CMakeOutput.log". >> >> >> >> > >> >> >> >> > See also >> >> >> >> > "/home/u/espinosa/test/src/csg/CMakeFiles/CMakeError.log". >> >> >> >> Can you send me that CMakeError.log! >> >> >> >> >> >> >> >> Christoph >> >> >> >> > >> >> >> >> > >> >> >> >> > >> >> >> >> > -- >> >> >> >> > You received this message because you are subscribed to the >> >> >> >> > Google >> >> >> >> > Groups >> >> >> >> > "votca" group. >> >> >> >> > To unsubscribe from this group and stop receiving emails from >> >> >> >> > it, >> >> >> >> > send >> >> >> >> > an >> >> >> >> > email to [email protected]. >> >> >> >> > To post to this group, send email to [email protected]. >> >> >> >> > Visit this group at https://groups.google.com/group/votca. >> >> >> >> > For more options, visit https://groups.google.com/d/optout. >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> -- >> >> >> >> Christoph Junghans >> >> >> >> Web: http://www.compphys.de >> >> >> >> >> >> >> >> -- >> >> >> >> You received this message because you are subscribed to a topic >> >> >> >> in >> >> >> >> the >> >> >> >> Google Groups "votca" group. >> >> >> >> To unsubscribe from this topic, visit >> >> >> >> https://groups.google.com/d/topic/votca/4rpetOU55f0/unsubscribe. >> >> >> >> To unsubscribe from this group and all its topics, send an email >> >> >> >> to >> >> >> >> [email protected]. >> >> >> >> To post to this group, send email to [email protected]. >> >> >> >> Visit this group at https://groups.google.com/group/votca. >> >> >> >> For more options, visit https://groups.google.com/d/optout. >> >> >> > >> >> >> > >> >> >> > -- >> >> >> > You received this message because you are subscribed to the Google >> >> >> > Groups >> >> >> > "votca" group. >> >> >> > To unsubscribe from this group and stop receiving emails from it, >> >> >> > send >> >> >> > an >> >> >> > email to [email protected]. >> >> >> > To post to this group, send email to [email protected]. >> >> >> > Visit this group at https://groups.google.com/group/votca. >> >> >> > For more options, visit https://groups.google.com/d/optout. >> >> >> >> >> >> >> >> >> >> >> >> -- >> >> >> Christoph Junghans >> >> >> Web: http://www.compphys.de >> >> >> >> >> >> -- >> >> >> You received this message because you are subscribed to a topic in >> >> >> the >> >> >> Google Groups "votca" group. >> >> >> To unsubscribe from this topic, visit >> >> >> https://groups.google.com/d/topic/votca/4rpetOU55f0/unsubscribe. >> >> >> To unsubscribe from this group and all its topics, send an email to >> >> >> [email protected]. >> >> >> To post to this group, send email to [email protected]. >> >> >> Visit this group at https://groups.google.com/group/votca. >> >> >> For more options, visit https://groups.google.com/d/optout. >> >> > >> >> > >> >> > -- >> >> > You received this message because you are subscribed to the Google >> >> > Groups >> >> > "votca" group. >> >> > To unsubscribe from this group and stop receiving emails from it, >> >> > send >> >> > an >> >> > email to [email protected]. >> >> > To post to this group, send email to [email protected]. >> >> > Visit this group at https://groups.google.com/group/votca. >> >> > For more options, visit https://groups.google.com/d/optout. >> >> >> >> >> >> >> >> -- >> >> Christoph Junghans >> >> Web: http://www.compphys.de >> >> >> >> -- >> >> You received this message because you are subscribed to a topic in the >> >> Google Groups "votca" group. >> >> To unsubscribe from this topic, visit >> >> https://groups.google.com/d/topic/votca/4rpetOU55f0/unsubscribe. >> >> To unsubscribe from this group and all its topics, send an email to >> >> [email protected]. >> >> To post to this group, send email to [email protected]. >> >> Visit this group at https://groups.google.com/group/votca. >> >> For more options, visit https://groups.google.com/d/optout. >> > >> > >> > -- >> > You received this message because you are subscribed to the Google >> > Groups >> > "votca" group. >> > To unsubscribe from this group and stop receiving emails from it, send >> > an >> > email to [email protected]. >> > To post to this group, send email to [email protected]. >> > Visit this group at https://groups.google.com/group/votca. >> > For more options, visit https://groups.google.com/d/optout. >> >> >> >> -- >> Christoph Junghans >> Web: http://www.compphys.de >> >> -- >> You received this message because you are subscribed to a topic in the >> Google Groups "votca" group. >> To unsubscribe from this topic, visit >> https://groups.google.com/d/topic/votca/4rpetOU55f0/unsubscribe. >> To unsubscribe from this group and all its topics, send an email to >> [email protected]. >> To post to this group, send email to [email protected]. >> Visit this group at https://groups.google.com/group/votca. >> For more options, visit https://groups.google.com/d/optout. > > > -- > You received this message because you are subscribed to the Google Groups > "votca" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at https://groups.google.com/group/votca. > For more options, visit https://groups.google.com/d/optout. -- Christoph Junghans Web: http://www.compphys.de -- You received this message because you are subscribed to the Google Groups "votca" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/votca. For more options, visit https://groups.google.com/d/optout.
