1) output: /home/u/espinosa/test/lib/libvotca_tools.so: /lib64/libc.so.6: version `GLIBC_2.14' not found (required by /home/u/espinosa/test/lib/libvotca_tools.so)
linux-vdso.so.1 => (0x00007fffa159c000) libboost_program_options.so.1.54.0 => not found libboost_filesystem.so.1.54.0 => not found libboost_system.so.1.54.0 => not found libgsl.so.0 => /opt/local/lib/libgsl.so.0 (0x00007fdbe15c9000) libgslcblas.so.0 => /opt/local/lib/libgslcblas.so.0 (0x00007fdbe1388000) libsqlite3.so.0 => /usr/lib64/libsqlite3.so.0 (0x00007fdbe10f6000) libfftw3.so.3 => /opt/local/gnu/fftw/lib/libfftw3.so.3 (0x00007fdbe0d71000) libexpat.so.1 => /lib64/libexpat.so.1 (0x00007fdbe0b47000) libpthread.so.0 => /lib64/libpthread.so.0 (0x00007fdbe092a000) libstdc++.so.6 => /opt/local/gc/lib/gcc/x86_64-cesup-linux/4.8.1/libstdc++.so.6 (0x00007fdbe061b000) libm.so.6 => /lib64/libm.so.6 (0x00007fdbe03c5000) libgcc_s.so.1 => /opt/local/gc/lib/gcc/x86_64-cesup-linux/4.8.1/libgcc_s.so.1 (0x00007fdbe01af000) libc.so.6 => /lib64/libc.so.6 (0x00007fdbdfe50000) /lib64/ld-linux-x86-64.so.2 (0x00007fdbe1c87000) 2) yes export LD_LIBRARY_PATH=/opt/local/lib:$LD_LIBRARY_PATH 2016-03-11 14:57 GMT-03:00 Christoph Junghans <[email protected]>: > I saw the following line in the error log: > /usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../x86_64-suse-linux/bin/ld: > warni > ng: libboost_program_options.so.1.54.0, needed by > /home/u/espinosa/test/lib/libvotca_tools.so, not found (try using > -rpath or -rpath-link) > > My guess is that once you load libvotca_tools.so, cannot be found anymore. > > Try two things: > 1.) Post the output of > $ ldd /home/u/espinosa/test/lib/libvotca_tools.so > 2.) Did you have > $ export LD_LIBRARY_PATH=/opt/local/lib > already? > > Christoph > > 2016-03-11 10:48 GMT-07:00 Tiago Espinosa <[email protected]>: > > command: > > > > ./build.sh -DGMX_DOUBLE=OFF -DGMX_GPU=OFF > -DBoost_LIBRARY_DIR=/opt/local/lib > > -DBOOST_INCLUDE_DIR=/opt/local/include/boost > > -DBoost_LIBRARY=/opt/local/lib/libboost_program_options.so > > -DGROMACS_INCLUDE_DIR=/home/u/espinosa/test/include/gromacs > > -DGROMACS_LIBRARY=/home/u/espinosa/test/lib64/libgromacs.so > > > -DVOTCA_TOOLS_LIBRARY='/home/u/espinosa/test/lib/libvotca_tools.so;/home/u/espinosa/test/lib/libvotca_tools.so.3;/home/u/espinosa/test/lib/libvotca_tools.so.4;/home/u/espinosa/test/lib/libmd.so' > > > -DFFTW3_LIBRARY='/opt/local/gnu/fftw/lib/libfftw3f.so;/opt/local/gnu/fftw/lib/libfftw3.so' > > -DFFTW3_INCLUDE_DIR=/opt/local/gnu/fftw/include > > -DGSL_LIBRARY='/opt/local/lib/libgsl.so;/opt/local/lib/libgslcblas.so' > > -DBOOST_ROOT=/opt/local/lib/ --dev tools csg --log build.log > > > > > > Regards > > > > > > Tiago > > > > > > 2016-03-10 14:47 GMT-03:00 Christoph Junghans <[email protected]>: > >> > >> At the end it says: > >> /home/u/espinosa/test/lib/libvotca_tools.so: undefined reference to > >> `boost::program_options::detail::cmdline::style(int)' > >> > >> That means something went wrong when linking. > >> I guess this might be triggered by a typo in your command. > >> "-Dboost_LIBRARY=" needs to be "-DBoost_LIBRARY=" (chapitel B) > >> I thing the easiest way to specify a custom Boost location is > >> BOOST_ROOT, i.e. -DBOOST_ROOT=/opt/local/ in your case. > >> > >> Cheers, > >> > >> Christoph > >> > >> 2016-03-10 9:56 GMT-07:00 Tiago Espinosa <[email protected]>: > >> > done! > >> > > >> > 2016-03-10 13:41 GMT-03:00 Christoph Junghans <[email protected]>: > >> >> > >> >> That looks better, boost got detected correctly! > >> >> > >> >> Can you send the CMakeError.log from inside csg > >> >> (/home/u/espinosa/test/src/csg/CMakeFiles/CMakeError.log)? > >> >> > >> >> 2016-03-10 8:12 GMT-07:00 Tiago Espinosa < > [email protected]>: > >> >> > Christoph, I did a new try, with a new boost: > >> >> > > >> >> > I did: > >> >> > > >> >> > export CC=gcc > >> >> > > >> >> > export CXX=g++ > >> >> > > >> >> > export F77=gfortran > >> >> > > >> >> > export LDFLAGS="-lpthread" > >> >> > > >> >> > export INCLUDE=/opt/local/include:$INCLUDE > >> >> > > >> >> > export LD_LIBRARY_PATH=/opt/local/lib:$LD_LIBRARY_PATH > >> >> > > >> >> > export PREFIX=/home/u/espinosa/test/ > >> >> > > >> >> > > >> >> > ./build.sh -DGMX_DOUBLE=OFF -DGMX_GPU=OFF > >> >> > -DBoost_LIBRARY_DIR=/opt/local/lib > >> >> > -DBOOST_INCLUDE_DIR=/opt/local/include/boost > >> >> > -Dboost_LIBRARY=/opt/local/lib/libboost_program_options.so > >> >> > -DGROMACS_INCLUDE_DIR=${PREFIX}/include/gromacs > >> >> > -DGROMACS_LIBRARY=${PREFIX}/lib64/libgromacs.so > >> >> > -DVOTCA_TOOLS_LIBRARY=${PREFIX}/lib/libvotca_tools.so > >> >> > > >> >> > > >> >> > > -DFFTW3_LIBRARY='/opt/local/gnu/fftw/lib/libfftw3f.so;/opt/local/gnu/fftw/lib/libfftw3.so' > >> >> > -DFFTW3_INCLUDE_DIR=/opt/local/gnu/fftw/include > >> >> > > >> >> > > -DGSL_LIBRARY='/opt/local/lib/libgsl.so;/opt/local/lib/libgslcblas.so' > >> >> > --dev > >> >> > tools csg --log build.log > >> >> > > >> >> > > >> >> > 2016-03-10 11:46 GMT-03:00 Christoph Junghans <[email protected] > >: > >> >> >> > >> >> >> 2016-03-09 21:02 GMT-07:00 Tiago Espinosa > >> >> >> <[email protected]>: > >> >> >> > OK, now I change CMakeList.txt: > >> >> >> > > >> >> >> > cmake_minimum_required(VERSION 2.8.11) > >> >> >> > find_package(Boost 1.36.0 REQUIRED COMPONENTS program_options > >> >> >> > > >> >> >> > version on cluster is 1.36.0 > >> >> >> Ok, I see, I guess that is why cmake fails. > >> >> >> However, Boost 1.36.0 is from 2008 and completely untested with > >> >> >> VOTCA, > >> >> >> I am not sure that will work. > >> >> >> You might need to update your boost. > >> >> >> > >> >> >> > > >> >> >> > and with these changes the process go a head a little bit more: > >> >> >> > > >> >> >> > Log of './build.sh --prefix /home/u/espinosa/test/ --dev tools > csg > >> >> >> > -DFFTW3_LIBRARY=/opt/local/intel/fftw-3.3.3/lib/libfftw3.so > >> >> >> > -DFFTW3_INCLUDE_DIR=/opt/local/intel/fftw-3.3.3/include/ > >> >> >> > -DWITH_SQLITE3=NO > >> >> >> > -DGROMACS_INCLUDE_DIR=/opt/local/gromacs-4.5.4/include/ > >> >> >> > -DGROMACS_LIBRARY=/opt/local/gromacs-4.5.4/lib/libgmx.so > >> >> >> > -DBoost_FILESYSTEM_LIBRARY=/usr/lib64/libboost_filesystem.so > --log > >> >> >> > build.log > >> >> >> > > >> >> >> > > -DVOTCA_TOOLS_LIBRARY=/home/u/espinosa/test/lib/libvotca_tools.so.4' > >> >> >> > > >> >> >> > ^[[32;01mThis is VOTCA build.sh, version 1.9.7^[[0m > >> >> >> > > >> >> >> > Install prefix is '/home/u/espinosa/test/' > >> >> >> > > >> >> >> > ^[[34;01mUsing 49 jobs for make^[[0m > >> >> >> > > >> >> >> > ^[[34;01msourcing '/home/u/espinosa/test//bin/VOTCARC.bash'^[[0m > >> >> >> > > >> >> >> > ^[[32;01mWorking on tools^[[0m > >> >> >> > > >> >> >> > ^[[34;01mSource dir (tools) is already there - skipping > >> >> >> > checkout^[[0m > >> >> >> > > >> >> >> > ^[[34;01mcmake -DCMAKE_INSTALL_PREFIX='/home/u/espinosa/test/' > >> >> >> > -DFFTW3_LIBRARY=/opt/local/intel/fftw-3.3.3/lib/libfftw3.so > >> >> >> > -DFFTW3_INCLUDE_DIR=/opt/local/intel/fftw-3.3.3/include/ > >> >> >> > -DWITH_SQLITE3=NO > >> >> >> > -DGROMACS_INCLUDE_DIR=/opt/local/gromacs-4.5.4/include/ > >> >> >> > -DGROMACS_LIBRARY=/opt/local/gromacs-4.5.4/lib/libgmx.so > >> >> >> > -DBoost_FILESYSTEM_LIBRARY=/usr/lib64/libboost_filesystem.so > >> >> >> > > >> >> >> > > -DVOTCA_TOOLS_LIBRARY=/home/u/espinosa/test/lib/libvotca_tools.so.4 > >> >> >> > -DCMAKE_INSTALL_RPATH_USE_LINK_PATH=ON .^[[0m > >> >> >> > > >> >> >> > -- Found Git: /opt/local/bin/git (found version "1.8.4-rc0") > >> >> >> > > >> >> >> > -- Looking for include file pthread.h > >> >> >> > > >> >> >> > -- Looking for include file pthread.h - found > >> >> >> > > >> >> >> > -- Looking for pthread_create > >> >> >> > > >> >> >> > -- Looking for pthread_create - not found > >> >> >> > > >> >> >> > -- Looking for pthread_create in pthreads > >> >> >> > > >> >> >> > -- Looking for pthread_create in pthreads - found > >> >> >> > > >> >> >> > -- Found Threads: TRUE > >> >> >> > > >> >> >> > -- Boost version: 1.36.0 > >> >> >> > > >> >> >> > -- Found the following Boost libraries: > >> >> >> > > >> >> >> > -- program_options > >> >> >> > > >> >> >> > -- filesystem > >> >> >> > > >> >> >> > -- system > >> >> >> > > >> >> >> > -- Looking for assert.h > >> >> >> > > >> >> >> > -- Looking for assert.h - found > >> >> >> > > >> >> >> > -- Looking for math.h > >> >> >> > > >> >> >> > -- Looking for math.h - found > >> >> >> > > >> >> >> > -- Looking for stdio.h > >> >> >> > > >> >> >> > -- Looking for stdio.h - found > >> >> >> > > >> >> >> > -- Looking for stdlib.h > >> >> >> > > >> >> >> > -- Looking for stdlib.h - found > >> >> >> > > >> >> >> > -- Looking for string.h > >> >> >> > > >> >> >> > -- Looking for string.h - found > >> >> >> > > >> >> >> > -- Looking for C++ include cmath > >> >> >> > > >> >> >> > -- Looking for C++ include cmath - found > >> >> >> > > >> >> >> > -- Looking for C++ include fstream > >> >> >> > > >> >> >> > -- Looking for C++ include fstream - found > >> >> >> > > >> >> >> > -- Looking for C++ include functional > >> >> >> > > >> >> >> > -- Looking for C++ include functional - found > >> >> >> > > >> >> >> > -- Looking for C++ include iostream > >> >> >> > > >> >> >> > -- Looking for C++ include iostream - found > >> >> >> > > >> >> >> > -- Looking for C++ include limits > >> >> >> > > >> >> >> > -- Looking for C++ include limits - found > >> >> >> > > >> >> >> > -- Looking for C++ include list > >> >> >> > > >> >> >> > -- Looking for C++ include list - found > >> >> >> > > >> >> >> > -- Looking for C++ include map > >> >> >> > > >> >> >> > -- Looking for C++ include map - found > >> >> >> > > >> >> >> > -- Looking for C++ include ostream > >> >> >> > > >> >> >> > -- Looking for C++ include ostream - found > >> >> >> > > >> >> >> > -- Looking for C++ include sstream > >> >> >> > > >> >> >> > -- Looking for C++ include sstream - found > >> >> >> > > >> >> >> > -- Looking for C++ include stack > >> >> >> > > >> >> >> > -- Looking for C++ include stack - found > >> >> >> > > >> >> >> > -- Looking for C++ include stdexcept > >> >> >> > > >> >> >> > -- Looking for C++ include stdexcept - found > >> >> >> > > >> >> >> > -- Looking for C++ include string > >> >> >> > > >> >> >> > -- Looking for C++ include string - found > >> >> >> > > >> >> >> > -- Looking for C++ include vector > >> >> >> > > >> >> >> > -- Looking for C++ include vector - found > >> >> >> > > >> >> >> > -- Looking for sqrt in m > >> >> >> > > >> >> >> > -- Looking for sqrt in m - found > >> >> >> > > >> >> >> > -- Found PkgConfig: /usr/bin/pkg-config (found version "0.23") > >> >> >> > > >> >> >> > -- checking for module 'expat' > >> >> >> > > >> >> >> > -- package 'expat' not found > >> >> >> > > >> >> >> > -- Found EXPAT: /usr/lib64/libexpat.so > >> >> >> > > >> >> >> > -- checking for module 'fftw3' > >> >> >> > > >> >> >> > -- package 'fftw3' not found > >> >> >> > > >> >> >> > -- Found FFTW3: /opt/local/intel/fftw-3.3.3/lib/libfftw3.so > >> >> >> > > >> >> >> > -- Looking for fftw_plan_r2r_1d in > >> >> >> > /opt/local/intel/fftw-3.3.3/lib/libfftw3.so;m > >> >> >> > > >> >> >> > -- Looking for fftw_plan_r2r_1d in > >> >> >> > /opt/local/intel/fftw-3.3.3/lib/libfftw3.so;m - found > >> >> >> > > >> >> >> > -- checking for module 'gsl' > >> >> >> > > >> >> >> > -- found gsl, version 1.11 > >> >> >> > > >> >> >> > -- Found GSL: /usr/lib64/libgsl.so > >> >> >> > > >> >> >> > -- Looking for gsl_linalg_QR_decomp in /usr/lib64/libgsl.so;m > >> >> >> > > >> >> >> > -- Looking for gsl_linalg_QR_decomp in /usr/lib64/libgsl.so;m - > >> >> >> > found > >> >> >> > > >> >> >> > -- Intel(R) MKL was found: > >> >> >> > > >> >> >> > MKL_INCLUDE_DIRS: /opt/intel/composerxe-2011.0.084/mkl/include > >> >> >> > > >> >> >> > MKL_LIBRARY_DIRS: > >> >> >> > > >> >> >> > > >> >> >> > > >> >> >> > > /opt/intel/composerxe-2011.0.084/mkl/lib/intel64;/opt/intel/composerxe-2011.0.084/compiler/lib/intel64 > >> >> >> > > >> >> >> > MKL_LIBRARIES: > >> >> >> > > >> >> >> > > >> >> >> > > >> >> >> > > /opt/intel/composerxe-2011.0.084/mkl/lib/intel64/libmkl_rt.so;/opt/intel/composerxe-2011.0.084/compiler/lib/intel64/libiomp5.so;/opt/intel/composerxe-2011.0.084/compiler/lib/intel64/libimf.so > >> >> >> > > >> >> >> > -- Performing Test HAVE_AIX > >> >> >> > > >> >> >> > -- Performing Test HAVE_AIX - Failed > >> >> >> > > >> >> >> > -- Found Doxygen: /usr/bin/doxygen (found version "1.5.6") > >> >> >> > > >> >> >> > -- Configuring done > >> >> >> > > >> >> >> > -- Generating done > >> >> >> > > >> >> >> > -- Build files have been written to: > >> >> >> > /home/u/espinosa/test/src/tools > >> >> >> > > >> >> >> > ^[[32;01mcleaning tools^[[0m > >> >> >> > > >> >> >> > ^[[32;01mbuidling tools^[[0m > >> >> >> > > >> >> >> > [ 0%] Built target votca_tools_manpages > >> >> >> > > >> >> >> > [ 0%] Built target gitversion > >> >> >> > > >> >> >> > Scanning dependencies of target votca_tools > >> >> >> > > >> >> >> > [ 15%] [ 15%] [ 18%] [ 21%] [ 24%] [ 27%] [ 27%] [ 33%] [ 33%] [ > >> >> >> > 36%] > >> >> >> > [ > >> >> >> > 36%] > >> >> >> > [ 36%] [ 39%] [ 42%] [ 48%] [ 48%] [ 51%] [ 54%] [ 57%] Building > >> >> >> > CXX > >> >> >> > object > >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/akimaspline.cc.o > >> >> >> > > >> >> >> > Building CXX object > >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/crosscorrelate.cc.o > >> >> >> > > >> >> >> > [ 60%] [ 63%] [ 69%] [ 69%] [ 72%] Building CXX object > >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/version.cc.o > >> >> >> > > >> >> >> > [ 75%] Building CXX object > >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/table.cc.o > >> >> >> > > >> >> >> > [ 78%] Building CXX object > >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/datacollection.cc.o > >> >> >> > > >> >> >> > Building CXX object > >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/histogram.cc.o > >> >> >> > > >> >> >> > Building CXX object > >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/linspline.cc.o > >> >> >> > > >> >> >> > Building CXX object > >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/cubicspline.cc.o > >> >> >> > > >> >> >> > [ 81%] Building CXX object > >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/parsexml.cc.o > >> >> >> > > >> >> >> > Building CXX object > >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/mutex.cc.o > >> >> >> > > >> >> >> > [ 84%] Building CXX object > >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/colors.cc.o > >> >> >> > > >> >> >> > Building CXX object > >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/tokenizer.cc.o > >> >> >> > > >> >> >> > Building CXX object > >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/property.cc.o > >> >> >> > > >> >> >> > Building CXX object > >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/spline.cc.o > >> >> >> > > >> >> >> > [ 87%] Building CXX object > >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/application.cc.o > >> >> >> > > >> >> >> > Building CXX object > >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/matrix.cc.o > >> >> >> > > >> >> >> > Building CXX object > >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/linalg.cc.o > >> >> >> > > >> >> >> > Building CXX object > >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/parcer.cc.o > >> >> >> > > >> >> >> > Building CXX object > >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/linalg/gsl/invert.cc.o > >> >> >> > > >> >> >> > Building CXX object > >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/correlate.cc.o > >> >> >> > > >> >> >> > Building CXX object > >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/random.cc.o > >> >> >> > > >> >> >> > Building CXX object > >> >> >> > > >> >> >> > > src/libtools/CMakeFiles/votca_tools.dir/linalg/gsl/eigensystems.cc.o > >> >> >> > > >> >> >> > Building CXX object > >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/globals.cc.o > >> >> >> > > >> >> >> > Building CXX object > >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/random2.cc.o > >> >> >> > > >> >> >> > Building CXX object > >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/thread.cc.o > >> >> >> > > >> >> >> > Building CXX object > >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/linalg/gsl/svd.cc.o > >> >> >> > > >> >> >> > Building CXX object > >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/linalg/gsl/qrsolve.cc.o > >> >> >> > > >> >> >> > Building CXX object > >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/histogramnew.cc.o > >> >> >> > > >> >> >> > [ 90%] [ 93%] Building CXX object > >> >> >> > > src/libtools/CMakeFiles/votca_tools.dir/propertyiomanipulator.cc.o > >> >> >> > > >> >> >> > Building CXX object > >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/rangeparser.cc.o > >> >> >> > > >> >> >> > Building CXX object > >> >> >> > src/libtools/CMakeFiles/votca_tools.dir/linalg/gsl/cholesky.cc.o > >> >> >> > > >> >> >> > Linking CXX shared library libvotca_tools.so > >> >> >> > > >> >> >> > [ 93%] Built target votca_tools > >> >> >> > > >> >> >> > [ 96%] Building CXX object > >> >> >> > src/tools/CMakeFiles/votca_property.dir/votca_property.cc.o > >> >> >> > > >> >> >> > Linking CXX executable votca_property > >> >> >> > > >> >> >> > [ 96%] Built target votca_property > >> >> >> > > >> >> >> > [100%] Building votca_property manpage > >> >> >> > > >> >> >> > [100%] Built target votca_property_manpage > >> >> >> > > >> >> >> > Scanning dependencies of target manpages > >> >> >> > > >> >> >> > [100%] Built target manpages > >> >> >> > > >> >> >> > ^[[32;01minstalling tools^[[0m > >> >> >> > > >> >> >> > [ 0%] Built target votca_tools_manpages > >> >> >> > > >> >> >> > [ 0%] Built target gitversion > >> >> >> > > >> >> >> > [ 93%] Built target votca_tools > >> >> >> > > >> >> >> > [ 96%] Built target votca_property > >> >> >> > > >> >> >> > [100%] Built target votca_property_manpage > >> >> >> > > >> >> >> > [100%] Built target manpages > >> >> >> > > >> >> >> > Linking CXX executable CMakeFiles/CMakeRelink.dir/votca_property > >> >> >> > > >> >> >> > Linking CXX shared library > >> >> >> > CMakeFiles/CMakeRelink.dir/libvotca_tools.so > >> >> >> > > >> >> >> > Install the project... > >> >> >> > > >> >> >> > -- Install configuration: "Release" > >> >> >> > > >> >> >> > -- Installing: /home/u/espinosa/test/lib/libvotca_tools.so.4 > >> >> >> > > >> >> >> > -- Up-to-date: /home/u/espinosa/test/lib/libvotca_tools.so > >> >> >> > > >> >> >> > -- Up-to-date: > >> >> >> > /home/u/espinosa/test/lib/pkgconfig/libvotca_tools.pc > >> >> >> > > >> >> >> > -- Installing: /home/u/espinosa/test/bin/votca_property > >> >> >> > > >> >> >> > -- Installing: > >> >> >> > /home/u/espinosa/test/share/man/man1/votca_property.1 > >> >> >> > > >> >> >> > -- Up-to-date: > >> >> >> > /home/u/espinosa/test/include/votca/tools/property.h > >> >> >> > > >> >> >> > -- Up-to-date: > /home/u/espinosa/test/include/votca/tools/thread.h > >> >> >> > > >> >> >> > -- Up-to-date: > >> >> >> > /home/u/espinosa/test/include/votca/tools/histogramnew.h > >> >> >> > > >> >> >> > -- Up-to-date: > /home/u/espinosa/test/include/votca/tools/random2.h > >> >> >> > > >> >> >> > -- Up-to-date: > /home/u/espinosa/test/include/votca/tools/matrix.h > >> >> >> > > >> >> >> > -- Up-to-date: > >> >> >> > /home/u/espinosa/test/include/votca/tools/akimaspline.h > >> >> >> > > >> >> >> > -- Up-to-date: > >> >> >> > /home/u/espinosa/test/include/votca/tools/constants.h > >> >> >> > > >> >> >> > -- Up-to-date: > >> >> >> > /home/u/espinosa/test/include/votca/tools/parsexml.h > >> >> >> > > >> >> >> > -- Up-to-date: > /home/u/espinosa/test/include/votca/tools/linalg.h > >> >> >> > > >> >> >> > -- Up-to-date: > /home/u/espinosa/test/include/votca/tools/version.h > >> >> >> > > >> >> >> > -- Up-to-date: > >> >> >> > /home/u/espinosa/test/include/votca/tools/datacollection.h > >> >> >> > > >> >> >> > -- Up-to-date: > >> >> >> > /home/u/espinosa/test/include/votca/tools/objectfactory.h > >> >> >> > > >> >> >> > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/mutex.h > >> >> >> > > >> >> >> > -- Up-to-date: > /home/u/espinosa/test/include/votca/tools/colors.h > >> >> >> > > >> >> >> > -- Up-to-date: > >> >> >> > /home/u/espinosa/test/include/votca/tools/linspline.h > >> >> >> > > >> >> >> > -- Up-to-date: > >> >> >> > /home/u/espinosa/test/include/votca/tools/calculator.h > >> >> >> > > >> >> >> > -- Up-to-date: > >> >> >> > /home/u/espinosa/test/include/votca/tools/rangeparser.h > >> >> >> > > >> >> >> > -- Up-to-date: > >> >> >> > /home/u/espinosa/test/include/votca/tools/crosscorrelate.h > >> >> >> > > >> >> >> > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/vec.h > >> >> >> > > >> >> >> > -- Up-to-date: > >> >> >> > /home/u/espinosa/test/include/votca/tools/tokenizer.h > >> >> >> > > >> >> >> > -- Up-to-date: > >> >> >> > /home/u/espinosa/test/include/votca/tools/application.h > >> >> >> > > >> >> >> > -- Up-to-date: > >> >> >> > /home/u/espinosa/test/include/votca/tools/cubicspline.h > >> >> >> > > >> >> >> > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/table.h > >> >> >> > > >> >> >> > -- Up-to-date: > /home/u/espinosa/test/include/votca/tools/getline.h > >> >> >> > > >> >> >> > -- Up-to-date: > >> >> >> > /home/u/espinosa/test/include/votca/tools/lexical_cast.h > >> >> >> > > >> >> >> > -- Up-to-date: > /home/u/espinosa/test/include/votca/tools/globals.h > >> >> >> > > >> >> >> > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/types.h > >> >> >> > > >> >> >> > -- Up-to-date: > /home/u/espinosa/test/include/votca/tools/spline.h > >> >> >> > > >> >> >> > -- Up-to-date: > /home/u/espinosa/test/include/votca/tools/average.h > >> >> >> > > >> >> >> > -- Up-to-date: > >> >> >> > /home/u/espinosa/test/include/votca/tools/histogram.h > >> >> >> > > >> >> >> > -- Up-to-date: > /home/u/espinosa/test/include/votca/tools/random.h > >> >> >> > > >> >> >> > -- Up-to-date: > >> >> >> > > /home/u/espinosa/test/include/votca/tools/propertyiomanipulator.h > >> >> >> > > >> >> >> > -- Up-to-date: > >> >> >> > /home/u/espinosa/test/include/votca/tools/correlate.h > >> >> >> > > >> >> >> > -- Up-to-date: /home/u/espinosa/test/bin/VOTCARC.csh > >> >> >> > > >> >> >> > -- Up-to-date: /home/u/espinosa/test/bin/VOTCARC.bash > >> >> >> > > >> >> >> > -- Up-to-date: > /home/u/espinosa/test/share/man/man7/votca-tools.7 > >> >> >> > > >> >> >> > ^[[32;01mdone with tools^[[0m > >> >> >> > > >> >> >> > ^[[34;01msourcing '/home/u/espinosa/test//bin/VOTCARC.bash'^[[0m > >> >> >> > > >> >> >> > ^[[32;01mWorking on csg^[[0m > >> >> >> > > >> >> >> > ^[[34;01mSource dir (csg) is already there - skipping > >> >> >> > checkout^[[0m > >> >> >> > > >> >> >> > ^[[34;01mcmake -DCMAKE_INSTALL_PREFIX='/home/u/espinosa/test/' > >> >> >> > -DFFTW3_LIBRARY=/opt/local/intel/fftw-3.3.3/lib/libfftw3.so > >> >> >> > -DFFTW3_INCLUDE_DIR=/opt/local/intel/fftw-3.3.3/include/ > >> >> >> > -DWITH_SQLITE3=NO > >> >> >> > -DGROMACS_INCLUDE_DIR=/opt/local/gromacs-4.5.4/include/ > >> >> >> > -DGROMACS_LIBRARY=/opt/local/gromacs-4.5.4/lib/libgmx.so > >> >> >> > -DBoost_FILESYSTEM_LIBRARY=/usr/lib64/libboost_filesystem.so > >> >> >> > > >> >> >> > > -DVOTCA_TOOLS_LIBRARY=/home/u/espinosa/test/lib/libvotca_tools.so.4 > >> >> >> > -DCMAKE_INSTALL_RPATH_USE_LINK_PATH=ON .^[[0m > >> >> >> > > >> >> >> > -- Found Git: /opt/local/bin/git (found version "1.8.4-rc0") > >> >> >> > > >> >> >> > -- Looking for include file pthread.h > >> >> >> > > >> >> >> > -- Looking for include file pthread.h - found > >> >> >> > > >> >> >> > -- Looking for pthread_create > >> >> >> > > >> >> >> > -- Looking for pthread_create - not found > >> >> >> > > >> >> >> > -- Looking for pthread_create in pthreads > >> >> >> > > >> >> >> > -- Looking for pthread_create in pthreads - found > >> >> >> > > >> >> >> > -- Looking for pthread_create in pthreads - found > >> >> >> > > >> >> >> > -- Found Threads: TRUE > >> >> >> > > >> >> >> > -- Found TXT2TAGS: /opt/local/bin/txt2tags > >> >> >> > > >> >> >> > -- Found UnixCommands: /bin/bash > >> >> >> > > >> >> >> > -- Found PkgConfig: /usr/bin/pkg-config (found version "0.23") > >> >> >> > > >> >> >> > -- checking for module 'libvotca_tools' > >> >> >> > > >> >> >> > -- package 'libvotca_tools' not found > >> >> >> > > >> >> >> > -- Found VOTCA_TOOLS: > >> >> >> > /home/u/espinosa/test/lib/libvotca_tools.so.4 > >> >> >> > > >> >> >> > -- Looking for VotcaToolsFromC in > >> >> >> > /home/u/espinosa/test/lib/libvotca_tools.so.4 > >> >> >> > > >> >> >> > -- Looking for VotcaToolsFromC in > >> >> >> > /home/u/espinosa/test/lib/libvotca_tools.so.4 - not found > >> >> >> > > >> >> >> > -- Configuring incomplete, errors occurred! > >> >> >> > > >> >> >> > See also > >> >> >> > "/home/u/espinosa/test/src/csg/CMakeFiles/CMakeOutput.log". > >> >> >> > > >> >> >> > See also > >> >> >> > "/home/u/espinosa/test/src/csg/CMakeFiles/CMakeError.log". > >> >> >> Can you send me that CMakeError.log! > >> >> >> > >> >> >> Christoph > >> >> >> > > >> >> >> > > >> >> >> > > >> >> >> > -- > >> >> >> > You received this message because you are subscribed to the > Google > >> >> >> > Groups > >> >> >> > "votca" group. > >> >> >> > To unsubscribe from this group and stop receiving emails from > it, > >> >> >> > send > >> >> >> > an > >> >> >> > email to [email protected]. > >> >> >> > To post to this group, send email to [email protected]. > >> >> >> > Visit this group at https://groups.google.com/group/votca. > >> >> >> > For more options, visit https://groups.google.com/d/optout. > >> >> >> > >> >> >> > >> >> >> > >> >> >> -- > >> >> >> Christoph Junghans > >> >> >> Web: http://www.compphys.de > >> >> >> > >> >> >> -- > >> >> >> You received this message because you are subscribed to a topic in > >> >> >> the > >> >> >> Google Groups "votca" group. > >> >> >> To unsubscribe from this topic, visit > >> >> >> https://groups.google.com/d/topic/votca/4rpetOU55f0/unsubscribe. > >> >> >> To unsubscribe from this group and all its topics, send an email > to > >> >> >> [email protected]. > >> >> >> To post to this group, send email to [email protected]. > >> >> >> Visit this group at https://groups.google.com/group/votca. > >> >> >> For more options, visit https://groups.google.com/d/optout. > >> >> > > >> >> > > >> >> > -- > >> >> > You received this message because you are subscribed to the Google > >> >> > Groups > >> >> > "votca" group. > >> >> > To unsubscribe from this group and stop receiving emails from it, > >> >> > send > >> >> > an > >> >> > email to [email protected]. > >> >> > To post to this group, send email to [email protected]. > >> >> > Visit this group at https://groups.google.com/group/votca. > >> >> > For more options, visit https://groups.google.com/d/optout. > >> >> > >> >> > >> >> > >> >> -- > >> >> Christoph Junghans > >> >> Web: http://www.compphys.de > >> >> > >> >> -- > >> >> You received this message because you are subscribed to a topic in > the > >> >> Google Groups "votca" group. > >> >> To unsubscribe from this topic, visit > >> >> https://groups.google.com/d/topic/votca/4rpetOU55f0/unsubscribe. > >> >> To unsubscribe from this group and all its topics, send an email to > >> >> [email protected]. > >> >> To post to this group, send email to [email protected]. > >> >> Visit this group at https://groups.google.com/group/votca. > >> >> For more options, visit https://groups.google.com/d/optout. > >> > > >> > > >> > -- > >> > You received this message because you are subscribed to the Google > >> > Groups > >> > "votca" group. > >> > To unsubscribe from this group and stop receiving emails from it, send > >> > an > >> > email to [email protected]. > >> > To post to this group, send email to [email protected]. > >> > Visit this group at https://groups.google.com/group/votca. > >> > For more options, visit https://groups.google.com/d/optout. > >> > >> > >> > >> -- > >> Christoph Junghans > >> Web: http://www.compphys.de > >> > >> -- > >> You received this message because you are subscribed to a topic in the > >> Google Groups "votca" group. > >> To unsubscribe from this topic, visit > >> https://groups.google.com/d/topic/votca/4rpetOU55f0/unsubscribe. > >> To unsubscribe from this group and all its topics, send an email to > >> [email protected]. > >> To post to this group, send email to [email protected]. > >> Visit this group at https://groups.google.com/group/votca. > >> For more options, visit https://groups.google.com/d/optout. > > > > > > -- > > You received this message because you are subscribed to the Google Groups > > "votca" group. > > To unsubscribe from this group and stop receiving emails from it, send an > > email to [email protected]. > > To post to this group, send email to [email protected]. > > Visit this group at https://groups.google.com/group/votca. > > For more options, visit https://groups.google.com/d/optout. > > > > -- > Christoph Junghans > Web: http://www.compphys.de > > -- > You received this message because you are subscribed to a topic in the > Google Groups "votca" group. > To unsubscribe from this topic, visit > https://groups.google.com/d/topic/votca/4rpetOU55f0/unsubscribe. > To unsubscribe from this group and all its topics, send an email to > [email protected]. > To post to this group, send email to [email protected]. > Visit this group at https://groups.google.com/group/votca. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "votca" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/votca. For more options, visit https://groups.google.com/d/optout.
