That looks better, boost got detected correctly! Can you send the CMakeError.log from inside csg (/home/u/espinosa/test/src/csg/CMakeFiles/CMakeError.log)?
2016-03-10 8:12 GMT-07:00 Tiago Espinosa <[email protected]>: > Christoph, I did a new try, with a new boost: > > I did: > > export CC=gcc > > export CXX=g++ > > export F77=gfortran > > export LDFLAGS="-lpthread" > > export INCLUDE=/opt/local/include:$INCLUDE > > export LD_LIBRARY_PATH=/opt/local/lib:$LD_LIBRARY_PATH > > export PREFIX=/home/u/espinosa/test/ > > > ./build.sh -DGMX_DOUBLE=OFF -DGMX_GPU=OFF -DBoost_LIBRARY_DIR=/opt/local/lib > -DBOOST_INCLUDE_DIR=/opt/local/include/boost > -Dboost_LIBRARY=/opt/local/lib/libboost_program_options.so > -DGROMACS_INCLUDE_DIR=${PREFIX}/include/gromacs > -DGROMACS_LIBRARY=${PREFIX}/lib64/libgromacs.so > -DVOTCA_TOOLS_LIBRARY=${PREFIX}/lib/libvotca_tools.so > -DFFTW3_LIBRARY='/opt/local/gnu/fftw/lib/libfftw3f.so;/opt/local/gnu/fftw/lib/libfftw3.so' > -DFFTW3_INCLUDE_DIR=/opt/local/gnu/fftw/include > -DGSL_LIBRARY='/opt/local/lib/libgsl.so;/opt/local/lib/libgslcblas.so' --dev > tools csg --log build.log > > > 2016-03-10 11:46 GMT-03:00 Christoph Junghans <[email protected]>: >> >> 2016-03-09 21:02 GMT-07:00 Tiago Espinosa <[email protected]>: >> > OK, now I change CMakeList.txt: >> > >> > cmake_minimum_required(VERSION 2.8.11) >> > find_package(Boost 1.36.0 REQUIRED COMPONENTS program_options >> > >> > version on cluster is 1.36.0 >> Ok, I see, I guess that is why cmake fails. >> However, Boost 1.36.0 is from 2008 and completely untested with VOTCA, >> I am not sure that will work. >> You might need to update your boost. >> >> > >> > and with these changes the process go a head a little bit more: >> > >> > Log of './build.sh --prefix /home/u/espinosa/test/ --dev tools csg >> > -DFFTW3_LIBRARY=/opt/local/intel/fftw-3.3.3/lib/libfftw3.so >> > -DFFTW3_INCLUDE_DIR=/opt/local/intel/fftw-3.3.3/include/ >> > -DWITH_SQLITE3=NO >> > -DGROMACS_INCLUDE_DIR=/opt/local/gromacs-4.5.4/include/ >> > -DGROMACS_LIBRARY=/opt/local/gromacs-4.5.4/lib/libgmx.so >> > -DBoost_FILESYSTEM_LIBRARY=/usr/lib64/libboost_filesystem.so --log >> > build.log >> > -DVOTCA_TOOLS_LIBRARY=/home/u/espinosa/test/lib/libvotca_tools.so.4' >> > >> > ^[[32;01mThis is VOTCA build.sh, version 1.9.7^[[0m >> > >> > Install prefix is '/home/u/espinosa/test/' >> > >> > ^[[34;01mUsing 49 jobs for make^[[0m >> > >> > ^[[34;01msourcing '/home/u/espinosa/test//bin/VOTCARC.bash'^[[0m >> > >> > ^[[32;01mWorking on tools^[[0m >> > >> > ^[[34;01mSource dir (tools) is already there - skipping checkout^[[0m >> > >> > ^[[34;01mcmake -DCMAKE_INSTALL_PREFIX='/home/u/espinosa/test/' >> > -DFFTW3_LIBRARY=/opt/local/intel/fftw-3.3.3/lib/libfftw3.so >> > -DFFTW3_INCLUDE_DIR=/opt/local/intel/fftw-3.3.3/include/ >> > -DWITH_SQLITE3=NO >> > -DGROMACS_INCLUDE_DIR=/opt/local/gromacs-4.5.4/include/ >> > -DGROMACS_LIBRARY=/opt/local/gromacs-4.5.4/lib/libgmx.so >> > -DBoost_FILESYSTEM_LIBRARY=/usr/lib64/libboost_filesystem.so >> > -DVOTCA_TOOLS_LIBRARY=/home/u/espinosa/test/lib/libvotca_tools.so.4 >> > -DCMAKE_INSTALL_RPATH_USE_LINK_PATH=ON .^[[0m >> > >> > -- Found Git: /opt/local/bin/git (found version "1.8.4-rc0") >> > >> > -- Looking for include file pthread.h >> > >> > -- Looking for include file pthread.h - found >> > >> > -- Looking for pthread_create >> > >> > -- Looking for pthread_create - not found >> > >> > -- Looking for pthread_create in pthreads >> > >> > -- Looking for pthread_create in pthreads - found >> > >> > -- Found Threads: TRUE >> > >> > -- Boost version: 1.36.0 >> > >> > -- Found the following Boost libraries: >> > >> > -- program_options >> > >> > -- filesystem >> > >> > -- system >> > >> > -- Looking for assert.h >> > >> > -- Looking for assert.h - found >> > >> > -- Looking for math.h >> > >> > -- Looking for math.h - found >> > >> > -- Looking for stdio.h >> > >> > -- Looking for stdio.h - found >> > >> > -- Looking for stdlib.h >> > >> > -- Looking for stdlib.h - found >> > >> > -- Looking for string.h >> > >> > -- Looking for string.h - found >> > >> > -- Looking for C++ include cmath >> > >> > -- Looking for C++ include cmath - found >> > >> > -- Looking for C++ include fstream >> > >> > -- Looking for C++ include fstream - found >> > >> > -- Looking for C++ include functional >> > >> > -- Looking for C++ include functional - found >> > >> > -- Looking for C++ include iostream >> > >> > -- Looking for C++ include iostream - found >> > >> > -- Looking for C++ include limits >> > >> > -- Looking for C++ include limits - found >> > >> > -- Looking for C++ include list >> > >> > -- Looking for C++ include list - found >> > >> > -- Looking for C++ include map >> > >> > -- Looking for C++ include map - found >> > >> > -- Looking for C++ include ostream >> > >> > -- Looking for C++ include ostream - found >> > >> > -- Looking for C++ include sstream >> > >> > -- Looking for C++ include sstream - found >> > >> > -- Looking for C++ include stack >> > >> > -- Looking for C++ include stack - found >> > >> > -- Looking for C++ include stdexcept >> > >> > -- Looking for C++ include stdexcept - found >> > >> > -- Looking for C++ include string >> > >> > -- Looking for C++ include string - found >> > >> > -- Looking for C++ include vector >> > >> > -- Looking for C++ include vector - found >> > >> > -- Looking for sqrt in m >> > >> > -- Looking for sqrt in m - found >> > >> > -- Found PkgConfig: /usr/bin/pkg-config (found version "0.23") >> > >> > -- checking for module 'expat' >> > >> > -- package 'expat' not found >> > >> > -- Found EXPAT: /usr/lib64/libexpat.so >> > >> > -- checking for module 'fftw3' >> > >> > -- package 'fftw3' not found >> > >> > -- Found FFTW3: /opt/local/intel/fftw-3.3.3/lib/libfftw3.so >> > >> > -- Looking for fftw_plan_r2r_1d in >> > /opt/local/intel/fftw-3.3.3/lib/libfftw3.so;m >> > >> > -- Looking for fftw_plan_r2r_1d in >> > /opt/local/intel/fftw-3.3.3/lib/libfftw3.so;m - found >> > >> > -- checking for module 'gsl' >> > >> > -- found gsl, version 1.11 >> > >> > -- Found GSL: /usr/lib64/libgsl.so >> > >> > -- Looking for gsl_linalg_QR_decomp in /usr/lib64/libgsl.so;m >> > >> > -- Looking for gsl_linalg_QR_decomp in /usr/lib64/libgsl.so;m - found >> > >> > -- Intel(R) MKL was found: >> > >> > MKL_INCLUDE_DIRS: /opt/intel/composerxe-2011.0.084/mkl/include >> > >> > MKL_LIBRARY_DIRS: >> > >> > /opt/intel/composerxe-2011.0.084/mkl/lib/intel64;/opt/intel/composerxe-2011.0.084/compiler/lib/intel64 >> > >> > MKL_LIBRARIES: >> > >> > /opt/intel/composerxe-2011.0.084/mkl/lib/intel64/libmkl_rt.so;/opt/intel/composerxe-2011.0.084/compiler/lib/intel64/libiomp5.so;/opt/intel/composerxe-2011.0.084/compiler/lib/intel64/libimf.so >> > >> > -- Performing Test HAVE_AIX >> > >> > -- Performing Test HAVE_AIX - Failed >> > >> > -- Found Doxygen: /usr/bin/doxygen (found version "1.5.6") >> > >> > -- Configuring done >> > >> > -- Generating done >> > >> > -- Build files have been written to: /home/u/espinosa/test/src/tools >> > >> > ^[[32;01mcleaning tools^[[0m >> > >> > ^[[32;01mbuidling tools^[[0m >> > >> > [ 0%] Built target votca_tools_manpages >> > >> > [ 0%] Built target gitversion >> > >> > Scanning dependencies of target votca_tools >> > >> > [ 15%] [ 15%] [ 18%] [ 21%] [ 24%] [ 27%] [ 27%] [ 33%] [ 33%] [ 36%] [ >> > 36%] >> > [ 36%] [ 39%] [ 42%] [ 48%] [ 48%] [ 51%] [ 54%] [ 57%] Building CXX >> > object >> > src/libtools/CMakeFiles/votca_tools.dir/akimaspline.cc.o >> > >> > Building CXX object >> > src/libtools/CMakeFiles/votca_tools.dir/crosscorrelate.cc.o >> > >> > [ 60%] [ 63%] [ 69%] [ 69%] [ 72%] Building CXX object >> > src/libtools/CMakeFiles/votca_tools.dir/version.cc.o >> > >> > [ 75%] Building CXX object >> > src/libtools/CMakeFiles/votca_tools.dir/table.cc.o >> > >> > [ 78%] Building CXX object >> > src/libtools/CMakeFiles/votca_tools.dir/datacollection.cc.o >> > >> > Building CXX object >> > src/libtools/CMakeFiles/votca_tools.dir/histogram.cc.o >> > >> > Building CXX object >> > src/libtools/CMakeFiles/votca_tools.dir/linspline.cc.o >> > >> > Building CXX object >> > src/libtools/CMakeFiles/votca_tools.dir/cubicspline.cc.o >> > >> > [ 81%] Building CXX object >> > src/libtools/CMakeFiles/votca_tools.dir/parsexml.cc.o >> > >> > Building CXX object src/libtools/CMakeFiles/votca_tools.dir/mutex.cc.o >> > >> > [ 84%] Building CXX object >> > src/libtools/CMakeFiles/votca_tools.dir/colors.cc.o >> > >> > Building CXX object >> > src/libtools/CMakeFiles/votca_tools.dir/tokenizer.cc.o >> > >> > Building CXX object >> > src/libtools/CMakeFiles/votca_tools.dir/property.cc.o >> > >> > Building CXX object src/libtools/CMakeFiles/votca_tools.dir/spline.cc.o >> > >> > [ 87%] Building CXX object >> > src/libtools/CMakeFiles/votca_tools.dir/application.cc.o >> > >> > Building CXX object src/libtools/CMakeFiles/votca_tools.dir/matrix.cc.o >> > >> > Building CXX object src/libtools/CMakeFiles/votca_tools.dir/linalg.cc.o >> > >> > Building CXX object src/libtools/CMakeFiles/votca_tools.dir/parcer.cc.o >> > >> > Building CXX object >> > src/libtools/CMakeFiles/votca_tools.dir/linalg/gsl/invert.cc.o >> > >> > Building CXX object >> > src/libtools/CMakeFiles/votca_tools.dir/correlate.cc.o >> > >> > Building CXX object src/libtools/CMakeFiles/votca_tools.dir/random.cc.o >> > >> > Building CXX object >> > src/libtools/CMakeFiles/votca_tools.dir/linalg/gsl/eigensystems.cc.o >> > >> > Building CXX object src/libtools/CMakeFiles/votca_tools.dir/globals.cc.o >> > >> > Building CXX object src/libtools/CMakeFiles/votca_tools.dir/random2.cc.o >> > >> > Building CXX object src/libtools/CMakeFiles/votca_tools.dir/thread.cc.o >> > >> > Building CXX object >> > src/libtools/CMakeFiles/votca_tools.dir/linalg/gsl/svd.cc.o >> > >> > Building CXX object >> > src/libtools/CMakeFiles/votca_tools.dir/linalg/gsl/qrsolve.cc.o >> > >> > Building CXX object >> > src/libtools/CMakeFiles/votca_tools.dir/histogramnew.cc.o >> > >> > [ 90%] [ 93%] Building CXX object >> > src/libtools/CMakeFiles/votca_tools.dir/propertyiomanipulator.cc.o >> > >> > Building CXX object >> > src/libtools/CMakeFiles/votca_tools.dir/rangeparser.cc.o >> > >> > Building CXX object >> > src/libtools/CMakeFiles/votca_tools.dir/linalg/gsl/cholesky.cc.o >> > >> > Linking CXX shared library libvotca_tools.so >> > >> > [ 93%] Built target votca_tools >> > >> > [ 96%] Building CXX object >> > src/tools/CMakeFiles/votca_property.dir/votca_property.cc.o >> > >> > Linking CXX executable votca_property >> > >> > [ 96%] Built target votca_property >> > >> > [100%] Building votca_property manpage >> > >> > [100%] Built target votca_property_manpage >> > >> > Scanning dependencies of target manpages >> > >> > [100%] Built target manpages >> > >> > ^[[32;01minstalling tools^[[0m >> > >> > [ 0%] Built target votca_tools_manpages >> > >> > [ 0%] Built target gitversion >> > >> > [ 93%] Built target votca_tools >> > >> > [ 96%] Built target votca_property >> > >> > [100%] Built target votca_property_manpage >> > >> > [100%] Built target manpages >> > >> > Linking CXX executable CMakeFiles/CMakeRelink.dir/votca_property >> > >> > Linking CXX shared library CMakeFiles/CMakeRelink.dir/libvotca_tools.so >> > >> > Install the project... >> > >> > -- Install configuration: "Release" >> > >> > -- Installing: /home/u/espinosa/test/lib/libvotca_tools.so.4 >> > >> > -- Up-to-date: /home/u/espinosa/test/lib/libvotca_tools.so >> > >> > -- Up-to-date: /home/u/espinosa/test/lib/pkgconfig/libvotca_tools.pc >> > >> > -- Installing: /home/u/espinosa/test/bin/votca_property >> > >> > -- Installing: /home/u/espinosa/test/share/man/man1/votca_property.1 >> > >> > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/property.h >> > >> > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/thread.h >> > >> > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/histogramnew.h >> > >> > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/random2.h >> > >> > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/matrix.h >> > >> > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/akimaspline.h >> > >> > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/constants.h >> > >> > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/parsexml.h >> > >> > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/linalg.h >> > >> > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/version.h >> > >> > -- Up-to-date: >> > /home/u/espinosa/test/include/votca/tools/datacollection.h >> > >> > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/objectfactory.h >> > >> > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/mutex.h >> > >> > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/colors.h >> > >> > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/linspline.h >> > >> > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/calculator.h >> > >> > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/rangeparser.h >> > >> > -- Up-to-date: >> > /home/u/espinosa/test/include/votca/tools/crosscorrelate.h >> > >> > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/vec.h >> > >> > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/tokenizer.h >> > >> > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/application.h >> > >> > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/cubicspline.h >> > >> > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/table.h >> > >> > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/getline.h >> > >> > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/lexical_cast.h >> > >> > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/globals.h >> > >> > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/types.h >> > >> > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/spline.h >> > >> > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/average.h >> > >> > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/histogram.h >> > >> > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/random.h >> > >> > -- Up-to-date: >> > /home/u/espinosa/test/include/votca/tools/propertyiomanipulator.h >> > >> > -- Up-to-date: /home/u/espinosa/test/include/votca/tools/correlate.h >> > >> > -- Up-to-date: /home/u/espinosa/test/bin/VOTCARC.csh >> > >> > -- Up-to-date: /home/u/espinosa/test/bin/VOTCARC.bash >> > >> > -- Up-to-date: /home/u/espinosa/test/share/man/man7/votca-tools.7 >> > >> > ^[[32;01mdone with tools^[[0m >> > >> > ^[[34;01msourcing '/home/u/espinosa/test//bin/VOTCARC.bash'^[[0m >> > >> > ^[[32;01mWorking on csg^[[0m >> > >> > ^[[34;01mSource dir (csg) is already there - skipping checkout^[[0m >> > >> > ^[[34;01mcmake -DCMAKE_INSTALL_PREFIX='/home/u/espinosa/test/' >> > -DFFTW3_LIBRARY=/opt/local/intel/fftw-3.3.3/lib/libfftw3.so >> > -DFFTW3_INCLUDE_DIR=/opt/local/intel/fftw-3.3.3/include/ >> > -DWITH_SQLITE3=NO >> > -DGROMACS_INCLUDE_DIR=/opt/local/gromacs-4.5.4/include/ >> > -DGROMACS_LIBRARY=/opt/local/gromacs-4.5.4/lib/libgmx.so >> > -DBoost_FILESYSTEM_LIBRARY=/usr/lib64/libboost_filesystem.so >> > -DVOTCA_TOOLS_LIBRARY=/home/u/espinosa/test/lib/libvotca_tools.so.4 >> > -DCMAKE_INSTALL_RPATH_USE_LINK_PATH=ON .^[[0m >> > >> > -- Found Git: /opt/local/bin/git (found version "1.8.4-rc0") >> > >> > -- Looking for include file pthread.h >> > >> > -- Looking for include file pthread.h - found >> > >> > -- Looking for pthread_create >> > >> > -- Looking for pthread_create - not found >> > >> > -- Looking for pthread_create in pthreads >> > >> > -- Looking for pthread_create in pthreads - found >> > >> > -- Looking for pthread_create in pthreads - found >> > >> > -- Found Threads: TRUE >> > >> > -- Found TXT2TAGS: /opt/local/bin/txt2tags >> > >> > -- Found UnixCommands: /bin/bash >> > >> > -- Found PkgConfig: /usr/bin/pkg-config (found version "0.23") >> > >> > -- checking for module 'libvotca_tools' >> > >> > -- package 'libvotca_tools' not found >> > >> > -- Found VOTCA_TOOLS: /home/u/espinosa/test/lib/libvotca_tools.so.4 >> > >> > -- Looking for VotcaToolsFromC in >> > /home/u/espinosa/test/lib/libvotca_tools.so.4 >> > >> > -- Looking for VotcaToolsFromC in >> > /home/u/espinosa/test/lib/libvotca_tools.so.4 - not found >> > >> > -- Configuring incomplete, errors occurred! >> > >> > See also "/home/u/espinosa/test/src/csg/CMakeFiles/CMakeOutput.log". >> > >> > See also "/home/u/espinosa/test/src/csg/CMakeFiles/CMakeError.log". >> Can you send me that CMakeError.log! >> >> Christoph >> > >> > >> > >> > -- >> > You received this message because you are subscribed to the Google >> > Groups >> > "votca" group. >> > To unsubscribe from this group and stop receiving emails from it, send >> > an >> > email to [email protected]. >> > To post to this group, send email to [email protected]. >> > Visit this group at https://groups.google.com/group/votca. >> > For more options, visit https://groups.google.com/d/optout. >> >> >> >> -- >> Christoph Junghans >> Web: http://www.compphys.de >> >> -- >> You received this message because you are subscribed to a topic in the >> Google Groups "votca" group. >> To unsubscribe from this topic, visit >> https://groups.google.com/d/topic/votca/4rpetOU55f0/unsubscribe. >> To unsubscribe from this group and all its topics, send an email to >> [email protected]. >> To post to this group, send email to [email protected]. >> Visit this group at https://groups.google.com/group/votca. >> For more options, visit https://groups.google.com/d/optout. > > > -- > You received this message because you are subscribed to the Google Groups > "votca" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at https://groups.google.com/group/votca. > For more options, visit https://groups.google.com/d/optout. -- Christoph Junghans Web: http://www.compphys.de -- You received this message because you are subscribed to the Google Groups "votca" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/votca. For more options, visit https://groups.google.com/d/optout.
