OK, now I change CMakeList.txt: cmake_minimum_required(VERSION 2.8.11) find_package(Boost 1.36.0 REQUIRED COMPONENTS program_options
version on cluster is 1.36.0 and with these changes the process go a head a little bit more: Log of './build.sh --prefix /home/u/espinosa/test/ --dev tools csg -DFFTW3_LIBRARY=/opt/local/intel/fftw-3.3.3/lib/libfftw3.so -DFFTW3_INCLUDE_DIR=/opt/local/intel/fftw-3.3.3/include/ -DWITH_SQLITE3=NO -DGROMACS_INCLUDE_DIR=/opt/local/gromacs-4.5.4/include/ -DGROMACS_LIBRARY=/opt/local/gromacs-4.5.4/lib/libgmx.so -DBoost_FILESYSTEM_LIBRARY=/usr/lib64/libboost_filesystem.so --log build.log -DVOTCA_TOOLS_LIBRARY=/home/u/espinosa/test/lib/libvotca_tools.so.4' ^[[32;01mThis is VOTCA build.sh, version 1.9.7^[[0m Install prefix is '/home/u/espinosa/test/' ^[[34;01mUsing 49 jobs for make^[[0m ^[[34;01msourcing '/home/u/espinosa/test//bin/VOTCARC.bash'^[[0m ^[[32;01mWorking on tools^[[0m ^[[34;01mSource dir (tools) is already there - skipping checkout^[[0m ^[[34;01mcmake -DCMAKE_INSTALL_PREFIX='/home/u/espinosa/test/' -DFFTW3_LIBRARY=/opt/local/intel/fftw-3.3.3/lib/libfftw3.so -DFFTW3_INCLUDE_DIR=/opt/local/intel/fftw-3.3.3/include/ -DWITH_SQLITE3=NO -DGROMACS_INCLUDE_DIR=/opt/local/gromacs-4.5.4/include/ -DGROMACS_LIBRARY=/opt/local/gromacs-4.5.4/lib/libgmx.so -DBoost_FILESYSTEM_LIBRARY=/usr/lib64/libboost_filesystem.so -DVOTCA_TOOLS_LIBRARY=/home/u/espinosa/test/lib/libvotca_tools.so.4 -DCMAKE_INSTALL_RPATH_USE_LINK_PATH=ON .^[[0m -- Found Git: /opt/local/bin/git (found version "1.8.4-rc0") -- Looking for include file pthread.h -- Looking for include file pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - found -- Found Threads: TRUE -- Boost version: 1.36.0 -- Found the following Boost libraries: -- program_options -- filesystem -- system -- Looking for assert.h -- Looking for assert.h - found -- Looking for math.h -- Looking for math.h - found -- Looking for stdio.h -- Looking for stdio.h - found -- Looking for stdlib.h -- Looking for stdlib.h - found -- Looking for string.h -- Looking for string.h - found -- Looking for C++ include cmath -- Looking for C++ include cmath - found -- Looking for C++ include fstream -- Looking for C++ include fstream - found -- Looking for C++ include functional -- Looking for C++ include functional - found -- Looking for C++ include iostream -- Looking for C++ include iostream - found -- Looking for C++ include limits -- Looking for C++ include limits - found -- Looking for C++ include list -- Looking for C++ include list - found -- Looking for C++ include map -- Looking for C++ include map - found -- Looking for C++ include ostream -- Looking for C++ include ostream - found -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Looking for C++ include stack -- Looking for C++ include stack - found -- Looking for C++ include stdexcept -- Looking for C++ include stdexcept - found -- Looking for C++ include string -- Looking for C++ include string - found -- Looking for C++ include vector -- Looking for C++ include vector - found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Found PkgConfig: /usr/bin/pkg-config (found version "0.23") -- checking for module 'expat' -- package 'expat' not found -- Found EXPAT: /usr/lib64/libexpat.so -- checking for module 'fftw3' -- package 'fftw3' not found -- Found FFTW3: /opt/local/intel/fftw-3.3.3/lib/libfftw3.so -- Looking for fftw_plan_r2r_1d in /opt/local/intel/fftw-3.3.3/lib/libfftw3.so;m -- Looking for fftw_plan_r2r_1d in /opt/local/intel/fftw-3.3.3/lib/libfftw3.so;m - found -- checking for module 'gsl' -- found gsl, version 1.11 -- Found GSL: /usr/lib64/libgsl.so -- Looking for gsl_linalg_QR_decomp in /usr/lib64/libgsl.so;m -- Looking for gsl_linalg_QR_decomp in /usr/lib64/libgsl.so;m - found -- Intel(R) MKL was found: MKL_INCLUDE_DIRS: /opt/intel/composerxe-2011.0.084/mkl/include MKL_LIBRARY_DIRS: /opt/intel/composerxe-2011.0.084/mkl/lib/intel64;/opt/intel/composerxe-2011.0.084/compiler/lib/intel64 MKL_LIBRARIES: /opt/intel/composerxe-2011.0.084/mkl/lib/intel64/libmkl_rt.so;/opt/intel/composerxe-2011.0.084/compiler/lib/intel64/libiomp5.so;/opt/intel/composerxe-2011.0.084/compiler/lib/intel64/libimf.so -- Performing Test HAVE_AIX -- Performing Test HAVE_AIX - Failed -- Found Doxygen: /usr/bin/doxygen (found version "1.5.6") -- Configuring done -- Generating done -- Build files have been written to: /home/u/espinosa/test/src/tools ^[[32;01mcleaning tools^[[0m ^[[32;01mbuidling tools^[[0m [ 0%] Built target votca_tools_manpages [ 0%] Built target gitversion Scanning dependencies of target votca_tools [ 15%] [ 15%] [ 18%] [ 21%] [ 24%] [ 27%] [ 27%] [ 33%] [ 33%] [ 36%] [ 36%] [ 36%] [ 39%] [ 42%] [ 48%] [ 48%] [ 51%] [ 54%] [ 57%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/akimaspline.cc.o Building CXX object src/libtools/CMakeFiles/votca_tools.dir/crosscorrelate.cc.o [ 60%] [ 63%] [ 69%] [ 69%] [ 72%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/version.cc.o [ 75%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/table.cc.o [ 78%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/datacollection.cc.o Building CXX object src/libtools/CMakeFiles/votca_tools.dir/histogram.cc.o Building CXX object src/libtools/CMakeFiles/votca_tools.dir/linspline.cc.o Building CXX object src/libtools/CMakeFiles/votca_tools.dir/cubicspline.cc.o [ 81%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/parsexml.cc.o Building CXX object src/libtools/CMakeFiles/votca_tools.dir/mutex.cc.o [ 84%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/colors.cc.o Building CXX object src/libtools/CMakeFiles/votca_tools.dir/tokenizer.cc.o Building CXX object src/libtools/CMakeFiles/votca_tools.dir/property.cc.o Building CXX object src/libtools/CMakeFiles/votca_tools.dir/spline.cc.o [ 87%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/application.cc.o Building CXX object src/libtools/CMakeFiles/votca_tools.dir/matrix.cc.o Building CXX object src/libtools/CMakeFiles/votca_tools.dir/linalg.cc.o Building CXX object src/libtools/CMakeFiles/votca_tools.dir/parcer.cc.o Building CXX object src/libtools/CMakeFiles/votca_tools.dir/linalg/gsl/invert.cc.o Building CXX object src/libtools/CMakeFiles/votca_tools.dir/correlate.cc.o Building CXX object src/libtools/CMakeFiles/votca_tools.dir/random.cc.o Building CXX object src/libtools/CMakeFiles/votca_tools.dir/linalg/gsl/eigensystems.cc.o Building CXX object src/libtools/CMakeFiles/votca_tools.dir/globals.cc.o Building CXX object src/libtools/CMakeFiles/votca_tools.dir/random2.cc.o Building CXX object src/libtools/CMakeFiles/votca_tools.dir/thread.cc.o Building CXX object src/libtools/CMakeFiles/votca_tools.dir/linalg/gsl/svd.cc.o Building CXX object src/libtools/CMakeFiles/votca_tools.dir/linalg/gsl/qrsolve.cc.o Building CXX object src/libtools/CMakeFiles/votca_tools.dir/histogramnew.cc.o [ 90%] [ 93%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/propertyiomanipulator.cc.o Building CXX object src/libtools/CMakeFiles/votca_tools.dir/rangeparser.cc.o Building CXX object src/libtools/CMakeFiles/votca_tools.dir/linalg/gsl/cholesky.cc.o Linking CXX shared library libvotca_tools.so [ 93%] Built target votca_tools [ 96%] Building CXX object src/tools/CMakeFiles/votca_property.dir/votca_property.cc.o Linking CXX executable votca_property [ 96%] Built target votca_property [100%] Building votca_property manpage [100%] Built target votca_property_manpage Scanning dependencies of target manpages [100%] Built target manpages ^[[32;01minstalling tools^[[0m [ 0%] Built target votca_tools_manpages [ 0%] Built target gitversion [ 93%] Built target votca_tools [ 96%] Built target votca_property [100%] Built target votca_property_manpage [100%] Built target manpages Linking CXX executable CMakeFiles/CMakeRelink.dir/votca_property Linking CXX shared library CMakeFiles/CMakeRelink.dir/libvotca_tools.so Install the project... -- Install configuration: "Release" -- Installing: /home/u/espinosa/test/lib/libvotca_tools.so.4 -- Up-to-date: /home/u/espinosa/test/lib/libvotca_tools.so -- Up-to-date: /home/u/espinosa/test/lib/pkgconfig/libvotca_tools.pc -- Installing: /home/u/espinosa/test/bin/votca_property -- Installing: /home/u/espinosa/test/share/man/man1/votca_property.1 -- Up-to-date: /home/u/espinosa/test/include/votca/tools/property.h -- Up-to-date: /home/u/espinosa/test/include/votca/tools/thread.h -- Up-to-date: /home/u/espinosa/test/include/votca/tools/histogramnew.h -- Up-to-date: /home/u/espinosa/test/include/votca/tools/random2.h -- Up-to-date: /home/u/espinosa/test/include/votca/tools/matrix.h -- Up-to-date: /home/u/espinosa/test/include/votca/tools/akimaspline.h -- Up-to-date: /home/u/espinosa/test/include/votca/tools/constants.h -- Up-to-date: /home/u/espinosa/test/include/votca/tools/parsexml.h -- Up-to-date: /home/u/espinosa/test/include/votca/tools/linalg.h -- Up-to-date: /home/u/espinosa/test/include/votca/tools/version.h -- Up-to-date: /home/u/espinosa/test/include/votca/tools/datacollection.h -- Up-to-date: /home/u/espinosa/test/include/votca/tools/objectfactory.h -- Up-to-date: /home/u/espinosa/test/include/votca/tools/mutex.h -- Up-to-date: /home/u/espinosa/test/include/votca/tools/colors.h -- Up-to-date: /home/u/espinosa/test/include/votca/tools/linspline.h -- Up-to-date: /home/u/espinosa/test/include/votca/tools/calculator.h -- Up-to-date: /home/u/espinosa/test/include/votca/tools/rangeparser.h -- Up-to-date: /home/u/espinosa/test/include/votca/tools/crosscorrelate.h -- Up-to-date: /home/u/espinosa/test/include/votca/tools/vec.h -- Up-to-date: /home/u/espinosa/test/include/votca/tools/tokenizer.h -- Up-to-date: /home/u/espinosa/test/include/votca/tools/application.h -- Up-to-date: /home/u/espinosa/test/include/votca/tools/cubicspline.h -- Up-to-date: /home/u/espinosa/test/include/votca/tools/table.h -- Up-to-date: /home/u/espinosa/test/include/votca/tools/getline.h -- Up-to-date: /home/u/espinosa/test/include/votca/tools/lexical_cast.h -- Up-to-date: /home/u/espinosa/test/include/votca/tools/globals.h -- Up-to-date: /home/u/espinosa/test/include/votca/tools/types.h -- Up-to-date: /home/u/espinosa/test/include/votca/tools/spline.h -- Up-to-date: /home/u/espinosa/test/include/votca/tools/average.h -- Up-to-date: /home/u/espinosa/test/include/votca/tools/histogram.h -- Up-to-date: /home/u/espinosa/test/include/votca/tools/random.h -- Up-to-date: /home/u/espinosa/test/include/votca/tools/propertyiomanipulator.h -- Up-to-date: /home/u/espinosa/test/include/votca/tools/correlate.h -- Up-to-date: /home/u/espinosa/test/bin/VOTCARC.csh -- Up-to-date: /home/u/espinosa/test/bin/VOTCARC.bash -- Up-to-date: /home/u/espinosa/test/share/man/man7/votca-tools.7 ^[[32;01mdone with tools^[[0m ^[[34;01msourcing '/home/u/espinosa/test//bin/VOTCARC.bash'^[[0m ^[[32;01mWorking on csg^[[0m ^[[34;01mSource dir (csg) is already there - skipping checkout^[[0m ^[[34;01mcmake -DCMAKE_INSTALL_PREFIX='/home/u/espinosa/test/' -DFFTW3_LIBRARY=/opt/local/intel/fftw-3.3.3/lib/libfftw3.so -DFFTW3_INCLUDE_DIR=/opt/local/intel/fftw-3.3.3/include/ -DWITH_SQLITE3=NO -DGROMACS_INCLUDE_DIR=/opt/local/gromacs-4.5.4/include/ -DGROMACS_LIBRARY=/opt/local/gromacs-4.5.4/lib/libgmx.so -DBoost_FILESYSTEM_LIBRARY=/usr/lib64/libboost_filesystem.so -DVOTCA_TOOLS_LIBRARY=/home/u/espinosa/test/lib/libvotca_tools.so.4 -DCMAKE_INSTALL_RPATH_USE_LINK_PATH=ON .^[[0m -- Found Git: /opt/local/bin/git (found version "1.8.4-rc0") -- Looking for include file pthread.h -- Looking for include file pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - found -- Looking for pthread_create in pthreads - found -- Found Threads: TRUE -- Found TXT2TAGS: /opt/local/bin/txt2tags -- Found UnixCommands: /bin/bash -- Found PkgConfig: /usr/bin/pkg-config (found version "0.23") -- checking for module 'libvotca_tools' -- package 'libvotca_tools' not found -- Found VOTCA_TOOLS: /home/u/espinosa/test/lib/libvotca_tools.so.4 -- Looking for VotcaToolsFromC in /home/u/espinosa/test/lib/libvotca_tools.so.4 -- Looking for VotcaToolsFromC in /home/u/espinosa/test/lib/libvotca_tools.so.4 - not found -- Configuring incomplete, errors occurred! See also "/home/u/espinosa/test/src/csg/CMakeFiles/CMakeOutput.log". See also "/home/u/espinosa/test/src/csg/CMakeFiles/CMakeError.log". -- You received this message because you are subscribed to the Google Groups "votca" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/votca. For more options, visit https://groups.google.com/d/optout.
