Hi Gowtham,
You can use something like this:
act seq1.embl seq1_v_seq2.comparison seq2.embl
for an additional comparison:
act seq1.embl seq1_v_seq2.comparison seq2.embl \
seq2_v_seq3.comparison seq3.embl
so you can keep adding seqeunce and comparisons files.
You would need to combine the sequence and annotation files for each into
one file.
Regards
Tim
On Mon, 28 Dec 2009, Gowthaman Ramasamy wrote:
Hi Tim,
I have a question about loading the files into ACT on command line. Without
using file browser.
Here is what I am trying to do. I would like to compare 5 genomes each having
35+ chormosomes. Some has more contigs. When the user want to see a gene in a
reference genome I want to fire up ACT, with all the 5 genomes and their
comparison files. I have a perl script which finds out the syntenic chromosomes
and does a tblastx to make ACT compatible blastout files for all the 5 genomes.
Now wondering is there an command line option so that I can automate the
loading of all the information in to ACT. To avoid user loading 5 genome files,
5 annotation files and 3 comparison files everytime.
Thanks very much for the time
Happy Holidays.
Gowtham
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