Tim,
Re-this thread:
We have generated a BAM file of 454 reads aligned with a reference
sequence using the latest version of Mosaik software, but I am unclear
on the exact Samtools commands that would convert this into a BAM file
suitable for Artemis (sorted and indexed). Is there some info on this?
Thank you for your help.
Regards,
Tony Barbet
Tim Carver wrote:
Hi Gowtham
Have a look at BamView.
http://bamview.sourceforge.net/
This is integrated into Artemis and can be found in the Artemis development
version (which is available from the above link as well as the Artemis home
page) and will be in the next release.
Regards
Tim
On 1/26/10 8:07 PM, "Gowthaman Ramasamy" <gowthaman.ramas...@sbri.org>
wrote:
Hi Tim,
I am trying to see if we can use artemis to display aligned illumina reads
against a chromosome. I know we can make user plot and display coverage
information. But wondering is there a way to display the reads themselves (nt
seq).
Gowtham
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