Hi Tim,
Thanks very much for the reply.
That's very cool and intuitive. I wish I tried before asking.
I have the GFF file with fasta seuence of chromosome at the bottom. Looks like
that working fine. Need to check in detail.
Or, do you insist converting them to ARTemis/genbank format.
Thanks very much Tim,
Gowtham
On 12/29/09 9:44 AM, "Tim Carver" <t...@sanger.ac.uk> wrote:
Hi Gowtham,
You can use something like this:
act seq1.embl seq1_v_seq2.comparison seq2.embl
for an additional comparison:
act seq1.embl seq1_v_seq2.comparison seq2.embl \
seq2_v_seq3.comparison seq3.embl
so you can keep adding seqeunce and comparisons files.
You would need to combine the sequence and annotation files for each into
one file.
Regards
Tim
On Mon, 28 Dec 2009, Gowthaman Ramasamy wrote:
> Hi Tim,
> I have a question about loading the files into ACT on command line. Without
> using file browser.
>
> Here is what I am trying to do. I would like to compare 5 genomes each having
> 35+ chormosomes. Some has more contigs. When the user want to see a gene in a
> reference genome I want to fire up ACT, with all the 5 genomes and their
> comparison files. I have a perl script which finds out the syntenic
> chromosomes and does a tblastx to make ACT compatible blastout files for all
> the 5 genomes.
>
> Now wondering is there an command line option so that I can automate the
> loading of all the information in to ACT. To avoid user loading 5 genome
> files, 5 annotation files and 3 comparison files everytime.
>
> Thanks very much for the time
> Happy Holidays.
> Gowtham
>
>
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