Relevant to this discussion, the 2018 ACA meeting in Toronto will have a
session on
"Best practices for building, refining, and analyzing ligands in macromolecular
structures”
co-chaired by Anna Gardberg and Kurt Krause.
I expect this session will include case studies of structures that went
Trevor,
I can share our recent experience correcting the record about a misplaced
ligand binding site. It represents one possible way to deal with erroneous
structures.
Our analysis of structures of the proline biosynthetic enzyme PYCR1 deposited
by another group in 2006 suggested that the
Trevor,
I can share our recent experience correcting the record about a misplaced
ligand binding site. It represents one possible way to deal with erroneous
structures.
Our analysis of structures of the proline biosynthetic enzyme PYCR1 deposited
by another group in 2006 suggested that the
Hi Trevor,
I think you should also email the authors of the key paper in your field that
you mention. They should be told that the structure they used to create the
model of the mechanism was incorrectly interpreted and should have the
opportunity to write a correction to their paper.
Best
s5.fr/ ,
http://lcrbw.pharmacie.univ-paris5.fr/spip.php?article18
De : "Goldman, Adrian" <adrian.gold...@helsinki.fi>
À : CCP4BB@JISCMAIL.AC.UK
Envoyé le : Mardi 27 juin 2017 10h59
Objet : Re: [ccp4bb] Incorrect Structure in the PDB
I agree: I don’t think this is fraud,
r/ ,
http://lcrbw.pharmacie.univ-paris5.fr/spip.php?article18
De : Bernhard Rupp <hofkristall...@gmail.com>
À : Philippe BENAS <philippe_be...@yahoo.fr>
Cc : "CCP4BB@JISCMAIL.AC.UK" <CCP4BB@jiscmail.ac.uk>
Envoyé le : Mardi 27 juin 2017 10h55
Objet : Re: [
___
De : "Goldman, Adrian"
<adrian.gold...@helsinki.fi<mailto:adrian.gold...@helsinki.fi>>
À : Philippe BENAS <philippe_be...@yahoo.fr<mailto:philippe_be...@yahoo.fr>>
Envoyé le : Mardi 27 juin 2017 10h30
Objet
*De :* "Goldman, Adrian" <adrian.gold...@helsinki.fi>
*À :* Philippe BENAS <philippe_be...@yahoo.fr>
*Envoyé le :* Mardi 27 juin 2017 10h30
*Objet :* Re: [ccp4bb] Incorrect Structure in the PDB
Philippe
All I did was take their deposited mtz and coordi
macie.univ-paris5.fr/ ,
http://lcrbw.pharmacie.univ-paris5.fr/spip.php?article18
De : "Goldman, Adrian" <adrian.gold...@helsinki.fi>
À : Philippe BENAS <philippe_be...@yahoo.fr>
Envoyé le : Mardi 27 juin 2017 10h30
Objet : Re: [ccp4bb] Incorrect Structure in the PDB
On the subject of withdrawal of entries from the PDB, I just flag up another
interesting aspect.
Four years ago I was Visiting Fellow in a colleague's lab, and in the course of
the year I determined, refined and deposited 4 good structures, authored by me
and my colleagues who were part of the
What tiny fraction of the gazillions it would cost to store all the raw
data, would be enough to arrange the training courses needed to get the
ballooning population of practitioners up to speed, he mused idly.
On 27/06/2017 09:21, Goldman, Adrian wrote:
That’s quite something. To me, this
That’s quite something. To me, this thread raises another issue: I see a lot
of comments about extracting the last little bit from every byte of data
collected - but that’s not our main problem. Our main problem appears to be
shoddily-done refinement of data that are in fact perfectly decent
letter to the editor of JBC.
Sent from Mail <https://go.microsoft.com/fwlink/?LinkId=550986> for Windows 10
From: Manfred S. Weiss <mailto:manfred.we...@helmholtz-berlin.de>
Sent: Tuesday, June 27, 2017 8:46 AM
To: Trevor Sewell <mailto:trevor.sew...@uct.ac.za>
Subject: Re: [ccp
550986> for
> Windows 10
>
>
>
> *From: *Manfred S. Weiss <mailto:manfred.we...@helmholtz-berlin.de>
> *Sent: *Tuesday, June 27, 2017 8:46 AM
> *To: *Trevor Sewell <mailto:trevor.sew...@uct.ac.za>
> *Subject: *Re: [ccp4bb] Incorrect Structure in the
Note that in most cases a structure may only be obsoleted with the written
agreement of a senior author. From experience it's by far the best approach to
work together with the original authors on a correction, in any case. Goodwill
is an important thing.
If you wish, you can go it alone and
Hello,
I think it makes sense to have a look at the policy of the PDB concerning
obsoleting structures:
The publication is retracted. The associated PDB entry will be obsoleted if
requested by the journal. If a request has not been received, the wwPDB will do
its best to contact the depositor
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