Hi John, My tool's input datatype is tabular. I do not have any custom datatypes defined.
Saket On 17 April 2014 18:10, John Chilton <jmchil...@gmail.com> wrote: > I don't see anywhere in your Travis YAML file where you are modifying > Galaxy's datatypes (like Peter does for instance on these lines > https://github.com/peterjc/pico_galaxy/blob/master/.travis.yml#L166). > If those datatypes are not defined you cannot upload a tool with a > specific type. Am I missing something? > > -John > > On Thu, Apr 17, 2014 at 7:33 AM, Saket Choudhary <sake...@gmail.com> wrote: >> On 17 April 2014 15:34, Peter Cock <p.j.a.c...@googlemail.com> wrote: >>> On Thu, Apr 17, 2014 at 12:59 AM, Saket Choudhary <sake...@gmail.com> wrote: >>>> I happened to copy Peter's .travis.yml for running tests for some of >>>> my packages. >>> >>> Background information: >>> http://blastedbio.blogspot.co.uk/2013/09/using-travis-ci-for-testing-galaxy-tools.html >>> >>>> However the process has not been smooth at all. >>>> See : https://travis-ci.org/saketkc/galaxy_tools/jobs/23166678#L908 >>>> >>>> AssertionError: Attempting to set field 'input' to value >>>> '['condel_input.tabular']' in form 'tool_form' threw exception: cannot >>>> find value/label "condel_input.tabular" in list control >>>> >>>> I am already passing it the correct ftype : >>>> https://github.com/saketkc/galaxy_tools/blob/travis-test/condel_web/condel_web.xml#L22 >>>> >>>> Is there something I am missing? >>> >>> This is similar to (but different) to the error message I recently >>> reported as being unclear when a datatype was not defined: >>> http://lists.bx.psu.edu/pipermail/galaxy-dev/2014-April/019090.html >>> >>> In your case, this is an input file which seems to be missing, >>> test-data/condel_input.tabular - but I see the line copying the >>> tool's test-data into the main Galaxy test-data folder is there >>> in the .travis.yml file. >>> >>> I am puzzled too. >>> >>> The key question I would ask you is: do your tests work locally? >>> If so, are they installed via a (local) Tool Shed, or manually along >>> the same lines of the attempted TravisCI tool installation? >>> >> >> Unfortunately No. >> >> TwillAssertionError: code is 500 != 200 >> >> I am running Galaxy under virtualenv. Unfortunately I get the same >> error irrespective of whther my input/output files exits inside >> test-data/ directory. I forgot to link them to test-data path earlier, >> but I get the same error even otherwise. >> >> >>> Regards, >>> >>> Peter >> ___________________________________________________________ >> Please keep all replies on the list by using "reply all" >> in your mail client. To manage your subscriptions to this >> and other Galaxy lists, please use the interface at: >> http://lists.bx.psu.edu/ >> >> To search Galaxy mailing lists use the unified search at: >> http://galaxyproject.org/search/mailinglists/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/