Hi John,

My tool's input datatype is tabular. I do not have any custom datatypes defined.

Saket

On 17 April 2014 18:10, John Chilton <jmchil...@gmail.com> wrote:
> I don't see anywhere in your Travis YAML file where you are modifying
> Galaxy's datatypes (like Peter does for instance on these lines
> https://github.com/peterjc/pico_galaxy/blob/master/.travis.yml#L166).
> If those datatypes are not defined you cannot upload a tool with a
> specific type. Am I missing something?
>
> -John
>
> On Thu, Apr 17, 2014 at 7:33 AM, Saket Choudhary <sake...@gmail.com> wrote:
>> On 17 April 2014 15:34, Peter Cock <p.j.a.c...@googlemail.com> wrote:
>>> On Thu, Apr 17, 2014 at 12:59 AM, Saket Choudhary <sake...@gmail.com> wrote:
>>>> I happened to copy Peter's .travis.yml for running tests for some of
>>>> my packages.
>>>
>>> Background information:
>>> http://blastedbio.blogspot.co.uk/2013/09/using-travis-ci-for-testing-galaxy-tools.html
>>>
>>>> However the process has not been smooth at all.
>>>> See : https://travis-ci.org/saketkc/galaxy_tools/jobs/23166678#L908
>>>>
>>>> AssertionError: Attempting to set field 'input' to value
>>>> '['condel_input.tabular']' in form 'tool_form' threw exception: cannot
>>>> find value/label "condel_input.tabular" in list control
>>>>
>>>> I am already passing it the correct ftype :
>>>> https://github.com/saketkc/galaxy_tools/blob/travis-test/condel_web/condel_web.xml#L22
>>>>
>>>> Is there something I am missing?
>>>
>>> This is similar to (but different) to the error message I recently
>>> reported as being unclear when a datatype was not defined:
>>> http://lists.bx.psu.edu/pipermail/galaxy-dev/2014-April/019090.html
>>>
>>> In your case, this is an input file which seems to be missing,
>>> test-data/condel_input.tabular - but I see the line copying the
>>> tool's test-data into the main Galaxy test-data folder is there
>>> in the .travis.yml file.
>>>
>>> I am puzzled too.
>>>
>>> The key question I would ask you is: do your tests work locally?
>>> If so, are they installed via a (local) Tool Shed, or manually along
>>> the same lines of the attempted TravisCI tool installation?
>>>
>>
>> Unfortunately No.
>>
>> TwillAssertionError: code is 500 != 200
>>
>> I am running Galaxy under virtualenv. Unfortunately I get the same
>> error irrespective of whther my input/output files exits inside
>> test-data/ directory. I forgot to link them to test-data path earlier,
>> but I get the same error even otherwise.
>>
>>
>>> Regards,
>>>
>>> Peter
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