Hi, Saket - 436 tests in 19.153 seconds means something odd (or fast) with your setup? What errors do you see?
Ross Lazarus MBBS MPH; Head, Medical Bioinformatics, BakerIDI; Tel: +61 385321444 http://scholar.google.com/citations?hl=en&user=UCUuEM4AAAAJ On Thu, Apr 17, 2014 at 10:43 PM, Saket Choudhary <sake...@gmail.com> wrote: > Just to add, that is the case with all the tests: > > $ sh run_functional_tests.sh > Ran 436 tests in 19.153s > > FAILED (errors=434) > > All tests fail locally and hence I decided to rely on travis. > https://wiki.galaxyproject.org/Admin/RunningTests#Functional_Tests > says it might be due to conflicting version of paste in my PYTHONPATH. > But it happens even if I run these under a virtualenv. > > Saket > > On 17 April 2014 18:03, Saket Choudhary <sake...@gmail.com> wrote: > > On 17 April 2014 15:34, Peter Cock <p.j.a.c...@googlemail.com> wrote: > >> On Thu, Apr 17, 2014 at 12:59 AM, Saket Choudhary <sake...@gmail.com> > wrote: > >>> I happened to copy Peter's .travis.yml for running tests for some of > >>> my packages. > >> > >> Background information: > >> > http://blastedbio.blogspot.co.uk/2013/09/using-travis-ci-for-testing-galaxy-tools.html > >> > >>> However the process has not been smooth at all. > >>> See : https://travis-ci.org/saketkc/galaxy_tools/jobs/23166678#L908 > >>> > >>> AssertionError: Attempting to set field 'input' to value > >>> '['condel_input.tabular']' in form 'tool_form' threw exception: cannot > >>> find value/label "condel_input.tabular" in list control > >>> > >>> I am already passing it the correct ftype : > >>> > https://github.com/saketkc/galaxy_tools/blob/travis-test/condel_web/condel_web.xml#L22 > >>> > >>> Is there something I am missing? > >> > >> This is similar to (but different) to the error message I recently > >> reported as being unclear when a datatype was not defined: > >> http://lists.bx.psu.edu/pipermail/galaxy-dev/2014-April/019090.html > >> > >> In your case, this is an input file which seems to be missing, > >> test-data/condel_input.tabular - but I see the line copying the > >> tool's test-data into the main Galaxy test-data folder is there > >> in the .travis.yml file. > >> > >> I am puzzled too. > >> > >> The key question I would ask you is: do your tests work locally? > >> If so, are they installed via a (local) Tool Shed, or manually along > >> the same lines of the attempted TravisCI tool installation? > >> > > > > Unfortunately No. > > > > TwillAssertionError: code is 500 != 200 > > > > I am running Galaxy under virtualenv. Unfortunately I get the same > > error irrespective of whther my input/output files exits inside > > test-data/ directory. I forgot to link them to test-data path earlier, > > but I get the same error even otherwise. > > > > > >> Regards, > >> > >> Peter > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ >
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