Note that you need to uninstall bzip2, xz, pcre, readline, curl before the corresponding system versions are picked up by ./configure (of course all this is not needed for fresh builds...)
if this does not help please post config.log On Wed, Jan 15, 2020 at 12:53 PM 'Martin R' via sage-release <[email protected]> wrote: > > > > Am Mittwoch, 15. Januar 2020 13:23:17 UTC+1 schrieb Dima Pasechnik: >> >> On Wed, Jan 15, 2020 at 12:13 PM 'Martin R' via sage-release >> <[email protected]> wrote: >> > >> > Oh dea, this is becoming strange: >> > >> > The output of configure says that >> > >> > atlas, openblas, iconv will NOT be installed, but >> > >> > bzip2-1.0.6-20150304.p0 >> > readline-6.3.008.p0 >> > xz-5.2.2.p0 >> > pcre-8.40.p2 >> > curl-7.62.0.p0 >> > >> > However, I certainly have bzip2, xz, pcre and curl on my system, and I >> > guess also readline. >> > >> > Might there be a bug in configure? >> >> You need development versions of these, see >> https://doc.sagemath.org/html/en/installation/source.html#linux-recommended-installation >> >> So, on Ubuntu: >> >> libbz2-dev >> libreadline-dev (seems to be missing in docs) >> liblzma-dev (this is the xz lib, iirc) >> libpcre3-dev >> libcurl4-openssl-dev > > >> >> the last of these, libcurl4-openssl-dev was indeed missing, but configure >> still wants to build r :-( > > > Martin >> >> >> >> > >> > Martin >> > >> > Am Mittwoch, 15. Januar 2020 13:00:51 UTC+1 schrieb Dima Pasechnik: >> >> >> >> On Wed, Jan 15, 2020 at 11:35 AM 'Martin R' via sage-release >> >> <[email protected]> wrote: >> >> > >> >> > Am Mittwoch, 15. Januar 2020 12:02:30 UTC+1 schrieb Dima Pasechnik: >> >> >> >> >> >> On Wed, Jan 15, 2020 at 10:37 AM 'Martin R' via sage-release >> >> >> <[email protected]> wrote: >> >> >> > >> >> >> > Thanks again! It still tries to build R and fails >> >> >> > >> >> >> > I checked that system R starts, it does (R version 3.4.4) >> >> >> Please also make sure that >> >> >> >> >> >> pkg-config --modversion libR >> >> >> >> >> >> outputs the version. >> >> >> >> >> > Yes, it does. >> >> > >> >> >> >> >> >> However there is just no "checking for R" message in your config.log, >> >> >> it indicates that there are still remains of R left >> >> >> in your installation. >> >> >> >> >> >> I've opened https://trac.sagemath.org/ticket/29016 >> >> >> to deal with R being hard to clean away - feel free to try it. >> >> >> >> >> >> Maybe you also need to run >> >> >> >> >> >> make r-clean >> >> > >> >> > >> >> > I did that, it says that there is no legacy uninstaller for r, and that >> >> > there is nothing to do. I checked for the files in the ticket, but >> >> > none of them exists. :-( >> >> > >> >> > The config.log contains the lines >> >> > >> >> > configure:18950: checking installing any of atlas openblas iconv >> >> > readline bzip2 xz pcre curl? >> >> > configure:18954: result: yes; install r as well >> >> > >> >> > but I do not know how to find out which of those (atlas openblas iconv >> >> > readline bzip2 xz pcre curl) is the problem. >> >> >> >> The easiest is to look at the output of ./configure >> >> It should contain lines like >> >> >> >> atlas-3.10.2.p3 will not be installed (configure check) >> >> >> >> for each of the packages in that list. >> >> So for any of these that are not marked this way, please install the >> >> corresponding system package >> >> and re-run configure. >> >> >> >> >> >> >> >> > >> >> > Martin >> >> > >> >> > -- >> >> > You received this message because you are subscribed to the Google >> >> > Groups "sage-release" group. >> >> > To unsubscribe from this group and stop receiving emails from it, send >> >> > an email to [email protected]. >> >> > To view this discussion on the web visit >> >> > https://groups.google.com/d/msgid/sage-release/5d105000-cea2-48a5-8840-aeb405a6cb71%40googlegroups.com. >> > >> > -- >> > You received this message because you are subscribed to the Google Groups >> > "sage-release" group. >> > To unsubscribe from this group and stop receiving emails from it, send an >> > email to [email protected]. >> > To view this discussion on the web visit >> > https://groups.google.com/d/msgid/sage-release/ca07b5bd-8fe6-4383-ad3a-eab749b3760e%40googlegroups.com. > > -- > You received this message because you are subscribed to the Google Groups > "sage-release" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/a2512246-f441-4ace-82df-fd1f354bcaf5%40googlegroups.com. -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/CAAWYfq2u6ZH1zEZGcpP%2BcjgCMoq9iZGjyPvf96g7kJAa7O_A0w%40mail.gmail.com.
