#9808: Upgrade numpy to 1.4.1 and scipy to 0.8
-----------------------------------+----------------------------------------
Reporter: maldun | Owner: maldun
Type: task | Status: needs_review
Priority: major | Milestone: sage-4.6
Component: packages | Keywords: numpy, scipy
Author: Stefan Reiterer | Upstream: N/A
Reviewer: Karl-Dieter Crisman | Merged:
Work_issues: |
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Comment(by kcrisman):
> * numpy-1.5.0 has an issues with cython that will be solved in 1.5.1 -
shame because it also fixes linux ppc and alpha.
Hmm, dropping an official thing is not so good. I think that one would
want to post to the list about this - more likely wait for 1.5.1? Or is
the fix for this easily backported?
Also, although I've been going for over 24 hours now on the tests (and
several timeouts! so I'll have to run those with
`SAGE_TIMEOUT_LONG>3600`), I have only seen two errors, both like this:
{{{
sage -t -long "devel/sage/sage/graphs/digraph.py"
**********************************************************************
File
"/Users/student/Desktop/sage-4.5.2/devel/sage/sage/graphs/digraph.py",
line 204:
sage: DiGraph(A)
Exception raised:
Traceback (most recent call last):
File "/Users/student/Desktop/sage-4.5.2/local/bin/ncadoctest.py",
line 1231, in run_one_test
self.run_one_example(test, example, filename, compileflags)
File "/Users/student/Desktop/sage-4.5.2/local/bin/sagedoctest.py",
line 38, in run_one_example
OrigDocTestRunner.run_one_example(self, test, example, filename,
compileflags)
File "/Users/student/Desktop/sage-4.5.2/local/bin/ncadoctest.py",
line 1172, in run_one_example
compileflags, 1) in test.globs
File "<doctest __main__.example_1[17]>", line 1, in <module>
DiGraph(A)###line 204:
sage: DiGraph(A)
File "/Users/student/Desktop/sage-4.5.2/local/lib/python/site-
packages/sage/graphs/digraph.py", line 364, in __init__
data = networkx.MultiDiGraph(data)
File
"/Users/student/Desktop/sage-4.5.2/local/lib/python2.6/networkx/classes/digraph.py",
line 217, in __init__
convert.from_whatever(data,create_using=self)
File
"/Users/student/Desktop/sage-4.5.2/local/lib/python2.6/networkx/convert.py",
line 157, in from_whatever
if isinstance(thing,numpy.core.defmatrix.matrix) or \
AttributeError: 'module' object has no attribute 'defmatrix'
**********************************************************************
}}}
Have you seen this? Clearly it's something to do with numpy, from the end
- but it's not clear to me why it would be asking whether a module has
defmatrix attribute.
--
Ticket URL: <http://trac.sagemath.org/sage_trac/ticket/9808#comment:129>
Sage <http://www.sagemath.org>
Sage: Creating a Viable Open Source Alternative to Magma, Maple, Mathematica,
and MATLAB
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