Hello,
Details for setting up FTP locally can be found here:
http://wiki.g2.bx.psu.edu/Admin/Config/Upload%20via%20FTP
Best,
J.
On May 24, 2012, at 10:41 PM, Sergei Manakov wrote:
> Hello,
>
> There is an option of FTP upload on public galaxy, but my local galaxy lacks
> this capability.
>
Hello,
Please see the section titled 'Setup for Local Instances' section on this page
to read about how to get .len files for various builds.
Best,
J.
On May 24, 2012, at 10:24 PM, Xu, Jianpeng wrote:
> Hi,
>
> I am trying to install the Trackster on the local galaxy. I read the webpage
> h
Hello,
There is an option of FTP upload on public galaxy, but my local galaxy
lacks this capability.
Is there a way to configure FTP upload for local galaxy?
thanks,
Sergei
--
Sergei (Siarhei Manakou) Manakov
California Institute of Technology
+1 626 395 3593
___
Hi,
I am trying to install the Trackster on the local galaxy. I read the webpage
http://wiki.g2.bx.psu.edu/Learn/Visualization
For example, to enable visualization of hg18, a file called hg18.len must exist
in the previously specified folder. The contents of the .len file is
tab-delimited and
Hi,
I've created a few workflows and have been having issues with some steps
randomly failing. This would not be an issue if I could simply resume the
workflow from the failed step, but it seems that this is not possible. Instead,
I'm forced to restart the workflow from the beginning. Is this
Okay, we'll do that! Thanks for the help.
___
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Hi Ann,
This code has been to added to the queue of items to be folded into the
main release. A developer will be in touch if and when they have questions.
Thanks for submitting this.
Dave C.
On Wed, May 23, 2012 at 9:14 AM, Ann Black-Ziegelbein <
annbl...@eng.uiowa.edu> wrote:
> Hi -
>
> We
Glad it helped.
About configuring Galaxy to use port 8080, other than what you are
already doing, checking for another process already using the port, I
wouldn't know what to recommend.
About the balancing configuration, I haven't done it, so I don't have
much to help with that. I do think it sho
On Thu, May 24, 2012 at 3:27 PM, julie dubois wrote:
> Ok I've tried to add my script perl in the command line with semi-colon.
> It's work
> But this script sets in entry the variable $wigoutput of my file xml. But
> when I show it, it's not what I want; It's just the value : 1 .
> I think it's b
Ok I've tried to add my script perl in the command line with semi-colon.
It's work
But this script sets in entry the variable $wigoutput of my file xml. But
when I show it, it's not what I want; It's just the value : 1 .
I think it's because the script of the application (macs) is called before
my
Hi all,
I have a similar, maybe related problem. I'm running a configuration as
described at
http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Web%20Application%20Scaling.
I have three webservers, one manager and two handlers. Everything is
behind an Apache and the rewrite rules are set acco
Thanks for pointing that out. I missed that there's now a seperate file
to organize everything.
However, it still seems to have some problems when installing tools from
the shed. I just replaced some of my old manual installations of tools
with an automatic installation from the shed, but some
On May 23, 2012, at 11:42 PM, Ciara Ledero wrote:
> I didn't know that. Thanks for the reply! Now I have a new set of questions.
> First, how do I list myself as an admin? Should I just literally add my login
> detail in the config file? Second, my colleague would like to be able to edit
> and
On Thu, May 24, 2012 at 1:54 PM, Jeremy Goecks wrote:
>Julie wrote:
>> Thank you Jeremy,
>> you answered partially. I would like insert a command, to launch my script,
>> in the script or in the xml files of my tools to force it to change the
>> extension
>> of output files. But it seems impossib
Hello Sarah,
This section of the Galaxy tool shed wiki should provide the information you
need. Let me know if you bump into any additional questions.
http://wiki.g2.bx.psu.edu/Tool%20Shed#Managing_the_layout_of_your_Galaxy_tool_panel
Thanks!
Greg Von Kuster
On May 24, 2012, at 8:15 AM, Sar
> Thank you Jeremy,
> you answered partially. I would like insert a command, to launch my script,
> in the script or in the xml files of my tools to force it to change the
> extension of output files.
> But it seems impossible because my command perl after the command of tool's
> script doesn't
Hi all,
currently I face some strange behaviour of the tool panel in Galaxy if I
add top-level label tags to the tool_conf.xml. The problem is that the
labels stay forever, even if I remove them again from the tool_conf.xml
and they also appear three section earlier than where I put them.
I tr
Hi,
I am reposting this message as I am still unsure what is causing this
error. Also, when I go to the manage jobs page in the admin section I
get the following message:
This Galaxy instance is not the job manager. If using multiple
servers, please directly access the job manager instanc
On Thu, May 24, 2012 at 4:42 AM, Ciara Ledero wrote:
> I didn't know that. Thanks for the reply! Now I have a new set of questions.
> First, how do I list myself as an admin? Should I just literally add my
> login detail in the config file?
Edit the universe_wsgi.ini file, add your email address
Thank you Jeremy,
you answered partially. I would like insert a command, to launch my script,
in the script or in the xml files of my tools to force it to change the
extension of output files.
But it seems impossible because my command perl after the command of tool's
script doesn't work in xml fil
Dear Jean-François,
But thanks for asking again, because now I had to look things up again,
and now I found it. :-) Helping other people is apparently a strong
drive to learn.
The only variables I have found, are following variables below (See
alsohttp://wiki.g2.bx.psu.edu/Admin/Tools/Tool%
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