Hi,
I am new to galaxy but I've been asked to implement some kind of tool
which would automatically export the history details (the information we
can find when hitting the 'view details' button) to a file, for an entire
workflow. Let's say we run some analyses using some workflow, the basic
i
Hi folks,
Some of our local Galaxy instance users seem to be experiencing some
strange behaviour lately. I searched the mailing-list archive but I
didn't found anything related, so I'd be interested to know if somebody
already had the same issue.
The problem is that sometimes, when people are
is
Galaxy.
Best regards,
Jean-François
From: Jennifer Jackson
To: Jean-Francois Payotte
Cc: galaxy-dev@lists.bx.psu.edu
Date: 07/06/2012 10:49 AM
Subject:Re: [galaxy-dev] Incomplete datasets when dowloaded from
history
Hello Jean-François,
For larger files, or i
Hi,
I already asked a similar question to the Galaxy mailing list toward this
topic, but it didn't quite solve my problem.
I was seeking help on a way to create a tool which would be able to
retrieve all the details (the information you get when clicking on the
"eye" icon in a job in the histor
risks to become non-functional with new Galaxy releases..
Best regards,
Jean-François
From: Peter Cock
To: Jean-Francois Payotte
Cc: galaxy-dev@lists.bx.psu.edu
Date: 14/06/2012 09:17 AM
Subject:Re: [galaxy-dev] How to retrieve the current history ID
On Thu, Jun 14, 201
Dear Galaxy Gurus,
I have been requested to find a way to tag each job (created when running
a workflow) with a "Project ID".
The user would have the possibility to enter a "Project ID" (maybe as a
workflow parameter) and then, some mechanism would link all of these jobs
with the "Project ID".
Dear Galaxy mailing-list,
Once again I come seeking for your help. I hope someone already had this
issue or will have an idea on where to look to solve it. :)
One of our users reported having workflows failing because some steps were
executed before all their inputs where ready.
You can find a
Dear Galaxy developers,
I know I am not the only one with this issue, as over time I've stumbled
on a few mailing-list threads with other users having the same problem.
And I know the recommended solution is to use the -noac mount option. (
http://wiki.galaxyproject.org/Admin/Config/Performance/
solve our issue when updating to the
November distribution. :)
Thanks,
Jean-François
From: Nate Coraor
To: Jean-Francois Payotte
Cc: galaxy-dev@lists.bx.psu.edu
Date: 08/11/2013 09:40 AM
Subject:Re: [galaxy-dev] Fw: "No peek" issue and datasets wrongly
repor
Dear Galaxy mailing-list,
We are currently facing a strange issue with our local Galaxy installation
(distribution from Jan. 11 2013).
I'm going to try to describe the problem as much as I can, and feel free
to ask for more details if it can help in solving this issue.
So basically, we have a
Dear Eric,
I'm glad to know that I am not the only one having this bug. (Even though
I would prefer if neither of us would have it). ;)
I've already written twice to the galaxy mailing-list, but I didn't
receive any answers so far.
Let's hope someone will be able to help us solve this issue.
Y
the one you sent me), or if I simply have to manually edit the file?
(That's what I did.)
Thanks again for your help! This is greatly appreciated!
Jean-Francois
From: Carl Eberhard
To: John Chilton
Cc: Jean-Francois Payotte ,
"galaxy-dev@lists.bx.psu.edu"
D
Hi Carl,
We are using a mysql database backend as well.
Thank you for your help and do not hesitate if I can sen you any other
useful information about our local Galaxy instance.
Thanks,
Jean-Francois
From: Carl Eberhard
To: Jean-Francois Payotte
Cc: John Chilton , "galax
"older history panel"?
Thanks,
Jean-Francois
From: Jean-Francois Payotte
To: carlfeberh...@gmail.com
Cc: "galaxy-dev@lists.bx.psu.edu"
Date: 12/03/2013 12:40 PM
Subject:Re: [galaxy-dev] Strange issue where the dataset reported
in the bug report
Dear Galaxy mailing list,
We ran into the same issue described in this post:
http://dev.list.galaxyproject.org/markupsafe-module-conflicts-tc4656214.html
The exact error message we are getting, with a few different tools is:
/Galaxy/galaxy_dist/lib/galaxy/__init__.py:79: UserWarning: Module
mar
flict I suppose).
Thank you for your help! This is much appreciated!
Jean-Francois
From: Dannon Baker
To: Jean-Francois Payotte
Cc: Galaxy Dev
Date: 19/04/2013 06:47 PM
Subject:Re: [galaxy-dev] Any hint on how to use Galaxy within
virtualenv?
Jean-Francois,
.
As soon as I can find a couple minutes to test it, I will let you know the
results.
Thank you for your follow-up. :)
Jean-Francois
From: Dannon Baker
To: Jean-Francois Payotte
Cc: Galaxy Dev
Date: 29/04/2013 09:24 AM
Subject:Re: [galaxy-dev] Any hint on how to us
Hi Carl, John,
Do you know if there has been any improvements regarding this issue?
As far as I know, the provided patch seemed to do the trick, although it
complicated the update to the latest Galaxy distribution a little bit (not
that much though).
I'm asking if there has been any finding on
18 matches
Mail list logo
