Dear Galaxy members,
I am new to galaxy and just installed galaxy on aws cloud. I am testing how it
works and have the following question below:
1. I tried to test bowtie2 with the dataset I uploaded, however, the
window for reference genome is very narrow and nothing from pull-down
:27 AM
To: Sun, Wenping [USA]
Cc: galaxy-u...@bx.psu.edu
Subject: [External] Re: [galaxy-user] question on galaxy reference genome window
Kathryn,
Are you using the galaxy cloud configuration provided by the team, or have you
installed your own galaxy on a cloud instance?
It sounds like
Dear galaxy users,
I tried to follow the instruction to see how the workflow worked by using the
one on the support site
Galaxy-Workflow-mt_analysis_0.01_strand-specific_(fastq_double).ga
However, it takes very very long time and remains the following state for
several hours. Is this normal?
Thanks and my question is--
How to shutting down the cloud if working on main.g2.bx.psu.edu?
Thanks,
Kathryn
-Original Message-
From: Dannon Baker [mailto:dannonba...@me.com]
Sent: Thursday, December 20, 2012 1:38 PM
To: Sun, Wenping [USA]
Cc: galaxy-u...@bx.psu.edu
Subject: [External
the ec2
instances/cluster and then launch the instance every time?
Thank you,
Kathryn
-Original Message-
From: Dannon Baker [mailto:dannonba...@me.com]
Sent: Thursday, December 20, 2012 1:43 PM
To: Sun, Wenping [USA]
Cc: galaxy-u...@bx.psu.edu
Subject: Re: [External] Re: [galaxy-user
: Thursday, December 20, 2012 2:23 PM
To: Sun, Wenping [USA]
Cc: galaxy-u...@bx.psu.edu
Subject: Re: [External] Re: [galaxy-user] galaxy cloudman login and aws instance
The ec2 instance is your personal instance that you have complete control over
for customization, you don't have a personal quota
with.
In this is the case, it would be great that if galaxy cloudman can be designed
more aws instance friendly in the future.
Thank you,
Kathryn
-Original Message-
From: Dannon Baker [mailto:dannonba...@me.com]
Sent: Thursday, December 20, 2012 2:43 PM
To: Sun, Wenping [USA]
Cc: galaxy-u...@bx.psu.edu
Dear Galaxy users,
I created galaxy instance using galaxy ami the first time. When I re-launch via
cloudlaunch site the 2nd time, I have question on adding cluster nodes. There
are several pull-down options for the nodes type, no matter which type I
choose, they always generate nodes with only
Thanks for the information. Would you help providing further information on
expanding ebs volume via cloudman UI?
Thank you in advance,
Kathryn
-Original Message-
From: dannonba...@me.com [mailto:dannonba...@me.com]
Sent: Thursday, December 27, 2012 10:03 AM
To: Sun, Wenping [USA]
Cc
]
Sent: Thursday, December 27, 2012 10:22 AM
To: Sun, Wenping [USA]
Cc: galaxy-u...@bx.psu.edu
Subject: Re: [External] Re: [galaxy-user] galaxy cluster nodes from the
cloudlaunch site
In the main (non-admin) cloudman UI you'll see a little icon next to the volume
size. Click this and you'll have
looking forward to the capability.
Thanks,
Kathryn
-Original Message-
From: dannonba...@me.com [mailto:dannonba...@me.com]
Sent: Thursday, December 27, 2012 10:35 AM
To: Sun, Wenping [USA]
Cc: galaxy-u...@bx.psu.edu
Subject: Re: [External] Re: [galaxy-user] galaxy cluster nodes from
...@me.com [mailto:dannonba...@me.com]
Sent: Thursday, December 27, 2012 10:51 AM
To: Sun, Wenping [USA]
Cc: galaxy-u...@bx.psu.edu
Subject: Re: [External] Re: [galaxy-user] galaxy cluster nodes from the
cloudlaunch site
Sun, Wenping [USA] wrote:
From a user side, it would be more flexible to initiate
[mailto:dannonba...@me.com]
Sent: Thursday, December 27, 2012 10:22 AM
To: Sun, Wenping [USA]
Cc: galaxy-u...@bx.psu.edu
Subject: Re: [External] Re: [galaxy-user] galaxy cluster nodes from the
cloudlaunch site
In the main (non-admin) cloudman UI you'll see a little icon next to the volume
size
Hello,
I have galaxy cloudman running and had tried one time success to log in to
retain the previous data and history after re-launching followed by 1st time
restart. Today I am re-launching again along with the correct size of ebs
volumes that I adjusted earlier. However, my login is not
To: Sun, Wenping [USA]
Cc: galaxy-u...@bx.psu.edu
Subject: [External] Re: [galaxy-user] galaxy cloudman login
To be clear, your admin user still works on this instance but another one does
not? If this is the case, can you log in as the admin user (and, if not,
simply register a new user
Hello,
It is good to see there are some testing dataset in fastq format from galaxy
s3. Is there any brief information about the test data? For example, RNAseq or
Chipseq, etc?
Many thanks,
Kathryn
___
The Galaxy User list should be used
Jen,
Thanks for the information.
Kathryn
From: Jennifer Jackson [mailto:j...@bx.psu.edu]
Sent: Monday, May 13, 2013 6:18 PM
To: Sun, Wenping [USA]
Cc: galaxy-user@lists.bx.psu.edu
Subject: [External] Re: [galaxy-user] Question on galaxy data visualization
Hello Kathryn,
Trackster is the primary
Dear galaxy members,
I have a question on the databases used in megablast module from galaxy. There
are four db options to blast against with -
1. htgs 28-Jan-2013
2. nt 28-Jan-2013
3. wgs 28-Jan-2013
4. phiX174
Is there any further information to guide which database
if there is other options (database)?
Thank you again!
Kathryn
From: Jennifer Jackson [mailto:j...@bx.psu.edu]
Sent: Friday, May 24, 2013 3:36 PM
To: Sun, Wenping [USA]
Cc: galaxy-user@lists.bx.psu.edu
Subject: [External] Re: [galaxy-user] Question on megablast databases
Hi Kathryn,
These first three are three
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