If you could upload the data I'll take a crack at it. So if in {x;y} the 
y refers to the scan event, what does the x refer to? Method segment?

If you need a server to upload it to:
http://tools.proteomecenter.org/wiki/index.php?title=TPP:Frequently_Asked_Questions#How_do_I_upload_files_to_the_SPC_tools_team.3F

Also, SPC tools team, how do I access that server? :P

-Matt


Andris Jankevics wrote:
> Hi Matt and Dominik, thank you for replay.
>
> As I understand data have 4 scanfilters: 1) negative with lockmass, 2)
> negative raw, 3) positive with lockmass, and 4) positive raw.
>
> Functions 1 and 3 are corrected to lockmass signal (no like in
> Water's, just lock scans ), and 2,4 raw data.
>
>  {1;1} refers to the first scan method defined in the experiment
> (positive mode in this example), and {1;2} is the second scan method
> (ie negative mode in this case).
>
> filterLine="FTMS {1;1}  + p ESI Full ms [60.00-1200.00]"
> filterLine="FTMS {1;2}  - p ESI Full ms [60.00-1200.00]" - negative
> polarity, profile mode, electrospray ionisation, raw ms (not corrected
> for lockmasses).
>
> I just checked out FilterLine.cpp code, and actually I was not able to
> figure out where exactly problem can occur, but I am not a software
> coder.
>
> Dominik, yes we tried to use RecalOfline, but also in this case
> "msLevel" and "polarity" are set wrong.
>
> Thank you and best regards,
>   

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