Sorry, I will post a new thread. I just didi hit the "reply" button.
On Thu, May 20, 2010 at 10:30 PM, Brian Pratt <[email protected]>wrote: > also, probably best to start a new thread - this hasn't got much to do > with "Installing X! Tandem Under Linux" > > - Brian > > On Thu, May 20, 2010 at 1:28 PM, Brian Pratt <[email protected]> > wrote: > > Can you post the various files to the spctools-discuss files area? > > Sounds like the kind of thing one needs to see in operation to > > diagnose. > > > > Brian > > > > On Thu, May 20, 2010 at 8:32 AM, Gradjanin Grada <[email protected]> > wrote: > >> Hello, > >> I have problem running a search on X!tanden under Win7. > >> Raw files were generated by Waters qToF, I have used masswolf to > convert > >> into mzxml. This is just a simple system test with cytochrome c and BSA, > and > >> I am using the default parameters as set during the installation. Apache > is > >> running without problems. > >> > >> > >> Here is the output: > >> > >> # Commands for session 7S8PSTNGJ on Thu May 20 17:32:42 2010 > >> # BEGIN COMMAND BLOCK > >> ###### BEGIN Command Execution ###### > >> [Thu May 20 17:32:42 2010] EXECUTING: run_in > >> c:/Inetpub/wwwroot/ISB/data/Systemtest; c:\Inetpub\tpp-bin\tandem > >> c:/Inetpub/wwwroot/ISB/data/Systemtest/CCBSA_1.tandem.params > >> > >> OUTPUT: > >> > >> command "c:\Inetpub\tpp-bin\tandem > >> c:/Inetpub/wwwroot/ISB/data/Systemtest/CCBSA_1.tandem.params" failed: > >> Unknown error > >> END OUTPUT > >> RETURN CODE:65280 > >> ###### End Command Execution ###### > >> > >> ###### BEGIN Command Execution ###### > >> [Thu May 20 17:32:43 2010] EXECUTING: run_in > >> c:/Inetpub/wwwroot/ISB/data/Systemtest; c:\Inetpub\tpp-bin\tandem > >> c:/Inetpub/wwwroot/ISB/data/Systemtest/CCBSA_2.tandem.params > >> OUTPUT: > >> > >> > >> command "c:\Inetpub\tpp-bin\tandem > >> c:/Inetpub/wwwroot/ISB/data/Systemtest/CCBSA_2.tandem.params" failed: > >> Unknown error > >> END OUTPUT > >> RETURN CODE:65280 > >> ###### End Command Execution ###### > >> # All finished at Thu May 20 17:32:43 2010 > >> > >> # END COMMAND BLOCK > >> > >> > >> Can anyone help? > >> > >> On Wed, May 19, 2010 at 7:47 PM, Brian Pratt <[email protected] > > > >> wrote: > >>> > >>> Yes, those scripts work flawlessly against the (now somewhat old) EC2 > >>> base images mentioned in their comments. But I imagine they need > >>> tweaking when used with something newer - linux ecosystems can be > >>> pretty brittle, as you know. > >>> > >>> Brian > >>> > >>> On Wed, May 19, 2010 at 8:21 AM, EricTan <[email protected]> wrote: > >>> > Yes, I followed the instructions for Ubuntu installation almost > >>> > religiously. I ought to retrace my steps and make sure that my final > >>> > setup is the same as the information in the scripts. Just curious - > >>> > your implementation of TPP 4.3.1 in EC2 cloud follows the scripts > >>> > strictly and you are able to run all applications from Petunia? (Of > >>> > course I do not mean the step where a Thermo RAW file is converted to > >>> > mzML or mzXML.) > >>> > > >>> > I read your comment in another thread about configuring Apache. I > >>> > believe what I am facing very likely came from ill configured Apache > >>> > on my end. Still, I suspect I may need to check on user account > >>> > permissions as well. > >>> > > >>> > Cheers > >>> > Eric > >>> > > >>> > -- > >>> > You received this message because you are subscribed to the Google > >>> > Groups "spctools-discuss" group. > >>> > To post to this group, send email to > [email protected]. > >>> > To unsubscribe from this group, send email to > >>> > [email protected]<spctools-discuss%[email protected]> > . > >>> > For more options, visit this group at > >>> > http://groups.google.com/group/spctools-discuss?hl=en. > >>> > > >>> > > >>> > >>> -- > >>> You received this message because you are subscribed to the Google > Groups > >>> "spctools-discuss" group. > >>> To post to this group, send email to [email protected] > . > >>> To unsubscribe from this group, send email to > >>> [email protected]<spctools-discuss%[email protected]> > . > >>> For more options, visit this group at > >>> http://groups.google.com/group/spctools-discuss?hl=en. > >>> > >> > >> > >> > >> -- > >> građanin > >> > >> -- > >> You received this message because you are subscribed to the Google > Groups > >> "spctools-discuss" group. > >> To post to this group, send email to [email protected]. > >> To unsubscribe from this group, send email to > >> [email protected]<spctools-discuss%[email protected]> > . > >> For more options, visit this group at > >> http://groups.google.com/group/spctools-discuss?hl=en. > >> > > > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]<spctools-discuss%[email protected]> > . > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > -- građanin -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. 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