Hi Bjorn and all,
I had the XML:Parser installed and up to date. Also, a friend pointed
out to me some lines in Makefile.incl that had to be changed since I
installed all the dependent packages using fink.
Unfortunately,I get an error that is still related to the
XPressPeptideUpdateParserMain. It seems that it might be related to a
bit issue? I'm using a new mac book pro which should be 64bit, but I'm
wondering if there's any configuration or packages I might need
related to this?
ld: warning: in /sw/lib/libgd.a, file was built for unsupported file
format which is not the architecture being linked (x86_64)
ld: warning: in /sw/lib/libpng.a, file was built for unsupported file
format which is not the architecture being linked (x86_64)
Undefined symbols:
"_gdImageLine", referenced from:
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
"_gdImageRectangle", referenced from:
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
"_gdImageSetPixel", referenced from:
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
"_gdImageColorAllocate", referenced from:
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
"_gdImageDestroy", referenced from:
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
"_gdImageCreate", referenced from:
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
"_gdImagePngPtr", referenced from:
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
"_gdFontSmall", referenced from:
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
"_gdImageString", referenced from:
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
"_gdImageInterlace", referenced from:
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
MAKE_PLOT(int, int, int, int, int, int, int, double, double,
double*, double*, double*, double*, char*, QuanStruct*)in
XPressPeptideUpdateParserMain.o
ld: symbol(s) not found
collect2: ld returned 1 exit status
make: *** [/sw/src/TPP-4.4.0/src/../build/darwin/
XPressPeptideUpdateParser.cgi] Error 1
Thanks so much!
Ravi
On Oct 19, 9:39 am, Bjorn <[email protected]> wrote:
> You're sure its not the perl XML parser causing the problem?
> I had some error messages that had gd in them, but went away after I
> installed the parser.
>
> In terminal (home directory):
> sudo cpan
> (If you've never done this before, that command will start a
> configuration process where you can answer all questions with default
> options. Once finished you should have the cpan shell where you type
> 'install XML::Parser'. If asked for installing dependencies always say
> 'yes'. Finally you will get a message if XML::Parser is up to date.
> Exit the cpan shell by typing 'exit'.
>
> Also, try to run these 2 commands after you modify your things.
> make clean (to clean up previous mess)
> make all (redo the make all command, hopefully now without errors)
>
> if that does not do it for you, then I'm lost as well...
> Good luck.
> Bjorn
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