Ok, it's getting out of my league, but maybe as a last idea: try to do everything with macports, instead of trying to blend fink and macports or just fink? I installed the TPP on my home mac (Core 2 duo, so also 64 bit) and I had no problems (only macports, no fink)... The folder /sw is everything fink (if I recall correctly), so the fact that all errors are within that folder can be due to fink? Bjorn
On Oct 19, 9:11 pm, Ravi <[email protected]> wrote: > Hi Bjorn and all, > > I had the XML:Parser installed and up to date. Also, a friend pointed > out to me some lines in Makefile.incl that had to be changed since I > installed all the dependent packages using fink. > > Unfortunately,I get an error that is still related to the > XPressPeptideUpdateParserMain. It seems that it might be related to a > bit issue? I'm using a new mac book pro which should be 64bit, but I'm > wondering if there's any configuration or packages I might need > related to this? > > ld: warning: in /sw/lib/libgd.a, file was built for unsupported file > format which is not the architecture being linked (x86_64) > ld: warning: in /sw/lib/libpng.a, file was built for unsupported file > format which is not the architecture being linked (x86_64) > Undefined symbols: > "_gdImageLine", referenced from: > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > "_gdImageRectangle", referenced from: > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > "_gdImageSetPixel", referenced from: > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > "_gdImageColorAllocate", referenced from: > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > "_gdImageDestroy", referenced from: > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > "_gdImageCreate", referenced from: > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > "_gdImagePngPtr", referenced from: > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > "_gdFontSmall", referenced from: > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > "_gdImageString", referenced from: > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > "_gdImageInterlace", referenced from: > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > MAKE_PLOT(int, int, int, int, int, int, int, double, double, > double*, double*, double*, double*, char*, QuanStruct*)in > XPressPeptideUpdateParserMain.o > ld: symbol(s) not found > collect2: ld returned 1 exit status > make: *** [/sw/src/TPP-4.4.0/src/../build/darwin/ > XPressPeptideUpdateParser.cgi] Error 1 > > Thanks so much! > > Ravi > > On Oct 19, 9:39 am, Bjorn <[email protected]> wrote:> You're sure its > not the perl XML parser causing the problem? > > I had some error messages that had gd in them, but went away after I > > installed the parser. > > > In terminal (home directory): > > sudo cpan > > (If you've never done this before, that command will start a > > configuration process where you can answer all questions with default > > options. Once finished you should have the cpan shell where you type > > 'install XML::Parser'. If asked for installing dependencies always say > > 'yes'. Finally you will get a message if XML::Parser is up to date. > > Exit the cpan shell by typing 'exit'. > > > Also, try to run these 2 commands after you modify your things. > > make clean (to clean up previous mess) > > make all (redo the make all command, hopefully now without errors) > > > if that does not do it for you, then I'm lost as well... > > Good luck. > > Bjorn -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
