I think it's just something to add to the replacement text.
script = script.replace(/boundingbox/g,boundbox)
I really don't want to add any Chime synonyms at this point.
Bob
2010/4/25 Angel Herráez angel.herr...@uah.es
While playing with Bob's new JS to convert Chime pages into Jmol, I
I think it's just something to add to the replacement text.
script = script.replace(/boundingbox/g,boundbox)
I really don't want to add any Chime synonyms at this point.
I understand. The problem is, that word appears in an spt file, and I haven't
yet figured out
how to parse that.
This is only arising because in my research for a book chapter I found more
sites than I imagined that are still using Chime, and thus shutting out Mac
and Linux users completely (I believe). Most of these are fairly simple
sites that one could go in and fix quickly with a bit of JavaScript.
Dear users,
As Bob said, this is coming a bit too late for us and it is more of a
proof-of-concept. Anyway,
I've done some some additions to Bob's ChimeToJmol.js and now this file is
included in the
SVN system for Jmol.
Depending on the Chime features of the actual page it is applied,
Thanks, Angel!
2010/4/26 Angel Herráez angel.herr...@uah.es
Dear users,
As Bob said, this is coming a bit too late for us and it is more of a
proof-of-concept. Anyway,
I've done some some additions to Bob's ChimeToJmol.js and now this file
is included in the
SVN system for Jmol.
Bob, I've had a look at this. Nice! Now that I have all my pages converted
manually ;-)
I am adding some features to the conversion: plugin/applet size in percent,
default rendering
style, ...
There's also the difficult isuue of zoom.
Could you put the JmolToChime.js in the SVN system so we
On Wed, Apr 21, 2010 at 8:42 PM, Robert Hanson hans...@stolaf.edu wrote:
I know I'm not the first to think of doing this -- what else is out there in
this regard?
Maybe someone will like the attached perl script,
to convert Rasmol to Jmol.
Place the 3 files in the same directory, make
That's what I remember I'm just looking for that.
The ChimeToJmol.js file idea is that it could be placed on any web page that
uses chime, and the page will automatically load Jmol instead. Not fully
worked out, but potentially of use, because that's all there is to it -- no
editing of files
Em 22/04/2010 20:21, Robert Hanson escreveu:
I thought Chime was gone, but in preparing a chapter I'm writing I
found quite a few sites out there that still use Chime and, of course,
are mostly useless now.
To my surprise I found out a few weeks ago that Symyx released a new
Chime version
Yes, I noticed that as well -- but no Mac support. I'm glad to see they are
finding use for it, and I think their use is more of an in-house one --
where an institution can demand that their offices use Microsoft OS. It
would be more interesting if there were a version for the Mac.
Bob
I know -- aren't we done with Chime??
But I have added to http://chemapps.stolaf.edu/jmol/docs/examples-11/ the
file ChimeToJmol.js
This file, if along with Jmol.js is indicated in a SCRIPT tag in the HEAD
section of a page that uses the Chime plug-in, should convert that page to
Jmol. Will take
On Wed, Apr 21, 2010 at 8:42 PM, Robert Hanson hans...@stolaf.edu wrote:
I know I'm not the first to think of doing this -- what else is out there in
this regard?
There used to be a script to convert a Chime script into a Jmol
script... have you used that?
Egon
--
Post-doc @ Uppsala
Hello Inbal
Time ago, someone wrote a script for doing that (maye in Perl, not
sure now) but I'm not sure if it is still available and how trustable
it may result, particularly for recent Jmol versions; in any case,
I'd rather do it manually.
The tasks are:
1. substitute embed tags by
Hello Angel,
Thank you for your help. I will consider seriously your last offer! :)
Best wishes,
Inbal
-Original Message-
From: Angel Herraez [mailto:angel.herr...@uah.es]
Sent: Monday, February 16, 2009 4:03 PM
To: jmol-users@lists.sourceforge.net
Subject: Re: [Jmol-users] Chime
Dear Jmol users,
We have several old web pages written for the Chime plug-in that we
would like to translate to Jmol. Are there any automatic tools that can
do that, at least partially?
Sincerely,
Inbal
--
Open Source
Hi, Shravan
I am not sure what you mean by generate graphs in Chime. It would
help if you provide us a link to what you have now, using Chime.
I believe
JMol does not posess the capability to generate graphs and is just
used to create animated 3-D images for the data present in the PDB
Hello Shravan,
Hi All,
We are trying to migrate an application from CHIME to JMol. We have a
setup which requires CHIME to read a *.pdb file and build an IR
spectra graph with the information provided. There is another frame
where CHIME creates an animated visual of the loaded PDB data.
Hello everybody
Congratulations to jmol developers and salutations to list members.
¿Anybody here have the problem of translate from chime to jmol?
¿Anybody in the worl is working to make more easy this proces?
I'm really surprised.
---
El 8 Sep 2005 a las 11:04, Marcelo Armengot escribió:
Hello everybody
Congratulations to jmol developers and salutations to list members.
¿Anybody here have the problem of translate from chime to jmol?
YES!
¿Anybody in the worl is working to make more easy this proces?
YES!
Take a look
On 2005-03-01 (13:38) William Reusch wrote:
Hi Tim,
You raise some interesting points, and I will try to obtain the
information pertaining to them. The data I cited came from a brief
(ca. 2 week period) in early January. Repeat hits were not factored
out. MSIE was far and away the most used
Hi Tim,
You raise some interesting points, and I will try to obtain the
information pertaining to them.
The data I cited came from a brief (ca. 2 week period) in early January.
Repeat hits were not factored out.
MSIE was far and away the most used browser, followed by Firefox and
Netscape.
On 2005-02-28 (16:34) Tamas E. Gunda wrote:
After the creation of many Chime pages in the past I've made several
Jmol test pages - I intend to write some new tutorial pages in
organic chemistry and before doing so I wanted to test Jmol. An
important point in my eyes is that the use of the pages
Tamas E. Gunda wrote:
To summarize, I am in dilemma - which is the better solution? To make
everything in double? The presence of Chime is easy to test,
and if ok, lets use it. However, the check of the Jmol applet is not so
straightforward, as its functionality heavily depends upon
the actual
timothy driscoll wrote:
so I would argue against putting a visible, active Jmol on your home page, for example
, until you can run some basic compatibility checks.
I worry about this on the new Jmol test page. Is that page set up to
detect the absense of capability to run the applet? Or does it
On Feb 28, 2005, at 11:56 AM, Bob Hanson wrote:
HOWEVER, it would be nice -- I'll bet Henry Rzepa knows how to do this
-- if when Java is not there they at least get a GIF or something that
points them to how to proceed. Would that be object code? For
example, jmol.js could be modified to
On 2005-02-28 (10:56) Bob Hanson wrote:
Tamas E. Gunda wrote:
To summarize, I am in dilemma - which is the better solution? To make
everything in double? The presence of Chime is easy to test, and if
ok, lets use it. However, the check of the Jmol applet is not so
straightforward, as its
On 2005-02-28 (11:01) Bob Hanson wrote:
timothy driscoll wrote:
so I would argue against putting a visible, active Jmol on your
home
page, for example
, until you can run some basic compatibility checks.
I worry about this on the new Jmol test page. Is that page set up to
detect the
Hi, Tamas,
I agree with your assessment that there is a dilemma right now (thanks
largely to Microsoft having removed java from Windows).
However, there is no question in my mind that jmol is the answer for the
future, because it is under active development, has open source, and
already works
Eric Martz wrote:
...
I agree with your assessment that there is a dilemma right now (thanks
largely to Microsoft having removed java from Windows).
...
Sun Microsystems (which controls Java) sued Microsoft to force the
software giant to conform to Sun's Java standard. That Microsoft would
then
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