On Mon, Nov 4, 2013 at 10:33 AM, Peter Cock <p.j.a.c...@googlemail.com> wrote: > > More "missing test results", yet listed under "Latest revision: > failing tool tests": > > http://testtoolshed.g2.bx.psu.edu/view/peterjc/get_orfs_or_cdss > http://testtoolshed.g2.bx.psu.edu/view/peterjc/seq_primer_clip > http://testtoolshed.g2.bx.psu.edu/view/peterjc/seq_select_by_id > > The common feature is they all depend on Biopython - perhaps that > failed to install, and the tests were skipped?
I updated all three of these tools (and others) on the Test Tool Shed yesterday to address my misconfigured dependencies (thanks Greg!), e.g. https://github.com/peterjc/pico_galaxy/commit/399111894d1ea9432a4c24ed0413698b9a2a1f94 (Note that other tools with the same broken dependency setup did not suffer from the "missing test output" problem - they were showing the tool's test failures) The good news is that seq_select_by_id has gone from an apparent failure with missing test output, to a passing test: http://testtoolshed.g2.bx.psu.edu/view/peterjc/seq_select_by_id/bedfe8f3d3fb The bad news is there are still 2 apparently failing tests with missing test output: http://testtoolshed.g2.bx.psu.edu/view/peterjc/get_orfs_or_cdss/09b5b1af9b8f http://testtoolshed.g2.bx.psu.edu/view/peterjc/seq_primer_clip/42bca649ec44 Similarly over on the Main Tool Shed (where I have not yet updated these two tools). Regards, Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
