#9808: Upgrade numpy to 1.4.1 and scipy to 0.8
------------------------------------------------+---------------------------
Reporter: maldun | Owner: maldun
Type: task | Status: needs_review
Priority: major | Milestone: sage-4.6
Component: packages | Keywords: numpy, scipy
Author: Stefan Reiterer, Francois Bissey | Upstream: N/A
Reviewer: Karl-Dieter Crisman | Merged:
Work_issues: |
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Old description:
> Since I really, really need them for my work, I will try to manage it to
> upgrade the scipy and numpy packages to the latest versions
>
> The packages can be found found under:
>
> http://code.google.com/p/spkg-
> upload/downloads/detail?name=numpy-1.4.1.spkg
> http://code.google.com/p/spkg-upload/downloads/detail?name=scipy-0.8.spkg
>
> Files are found with direct links:
>
> http://spkg-upload.googlecode.com/files/numpy-1.4.1.spkg
> http://spkg-upload.googlecode.com/files/scipy-0.8.spkg
>
> Important notes:
> after installing numpy, one needs to execute sage -ba, or else one get's
> runtime warnings.
>
> You also need networkx-1.2. (the other networkx is just a small hack for
> testing, because 1.2. didn't build correctly on my old sage versions, but
> this is obsolete now, since networkx-1.2 is merged into sage
> 4.5.3.alpha1)
>
> trac_9808_numpy_doctest_change.patch in the attachment has to be applied,
> in order to get all doctests running because some of the output has
> changed.
New description:
The packages can be found found under:
http://code.google.com/p/spkg-
upload/downloads/detail?name=numpy-1.4.1.spkg
http://code.google.com/p/spkg-upload/downloads/detail?name=scipy-0.8.spkg
Files are found with direct links:
http://spkg-upload.googlecode.com/files/numpy-1.4.1.spkg
http://spkg-upload.googlecode.com/files/scipy-0.8.spkg
Important notes:
after installing numpy, one needs to execute sage -ba, or else one get's
runtime warnings.
trac_9808_numpy_doctest_change.patch in the attachment has to be applied,
in order to get all doctests running because some of the output has
changed.
--
Comment(by maldun):
Replying to [comment:141 leif]:
> Dave pointed me to this ticket the day before yesterday (and I read it
from the beginning). ;-)
>
> Despite that, it's unclear to me which diffs are currrent, and the
description should IMHO be updated wrt. what's to be done to review this.
>
> {{{./sage -ba}}} is also in my opinion not a solution to get dependent
extension modules updated, i.e. if {{{./sage -b}}} isn't sufficient,
dependencies should be added to {{{module_list.py}}}.
>
I cleaned up the discription a little bit, and deleted the obsolete remark
about networkx-1.2
I don't know if this is a good Idea because this is a whole bunch of files
we are talking about, which have to be added. Perhaps you won't save much
time either when compiling. I first tried this too, but after about 2
hours searching, I got somehow tired of this... And after merging numpy >
1.3.x into Sage this has not to be done anymore. All versions of 1.5.x
builded without problems, and didn't need -ba anymore.
You only have to do this when big changes are happening, and this is
rather occassionally.
package with a linux ppc patch is out: http://code.google.com/p/spkg-
upload/downloads/detail?name=numpy-1.4.1.p0.spkg
hope it works this time!
--
Ticket URL: <http://trac.sagemath.org/sage_trac/ticket/9808#comment:142>
Sage <http://www.sagemath.org>
Sage: Creating a Viable Open Source Alternative to Magma, Maple, Mathematica,
and MATLAB
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